Rroxscaffold_2G00115780

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
42246931 .. 42247422
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115780.1

Sequence Viewer

Length: 222 bp
ATGGGAGGTTGCAGACCATTGGGTTTCTTGCTGGGATTGCCTTTTGCTTTGGTCGCCTTGGTAATATCTGTCGTGGGTTGCGTCATCTGGGTTTTTGGGACTGTGTTGAGTTGTTTGTGCCCATGTTGCTGCTGCGTTGCTGGATTAGCAAACATGGCGGTGTCTCTTATCAAGCTTCCTATCAAAATATTGAAATGGTCCACTGACCAGATCCCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.64

Weight (kDa)

8.44

Isoelectric Point (pI)

22.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 205
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 129, 132
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 116, 119
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 2 cut(s) 130, 133
BlsI GCNGC 2 cut(s) 131, 134
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 2 cut(s) 116, 119
BseYI CCCAGC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 103
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 5 cut(s) 37, 53, 126, 146, 155
BstSLI GKGCMC 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 116, 119
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 70
CviAII CATG 3 cut(s) 123, 154, 216
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 126, 157, 219
FaiI YATR 3 cut(s) 124, 155, 217
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 122, 153, 215
Fnu4HI GCNGC 2 cut(s) 130, 133
Fsp4HI GCNGC 2 cut(s) 130, 133
GluI GCNGC 2 cut(s) 130, 133
GsaI CCCAGC 1 cut(s) 35
HgaI GACGC 1 cut(s) 70
Hin1II CATG 3 cut(s) 126, 157, 219
HindIII AAGCTT 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 53, 126, 146, 155
Hsp92II CATG 3 cut(s) 126, 157, 219
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 3 cut(s) 17, 73, 126
Lsp1109I GCAGC 2 cut(s) 116, 119
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 158
MwoI GCNNNNNNNGC 5 cut(s) 37, 53, 126, 146, 155
NdeII GATC 1 cut(s) 210
NlaIII CATG 3 cut(s) 126, 157, 219
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PkrI GCNGC 2 cut(s) 131, 134
PspFI CCCAGC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 2 cut(s) 130, 133
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 122
SetI ASST 2 cut(s) 10, 177
SgeI CNNG 9 cut(s) 40, 44, 70, 85, 100, 135, 153, 166, 184
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 158
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 189
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 103
TscAI CASTG 1 cut(s) 208
TseI GCWGC 2 cut(s) 129, 132
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.