MD10G1308800.v1.1

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0022296
Physical Location & Seq
Forward (+)
39368597 .. 39370336
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1308800.v1.1.491

Sequence Viewer

Length: 618 bp
ATGTTAGAGTCGGGTACAACAAAGTCCCAGGGAAAACCGTCGGGTGGGTTGCCAAGTGCCAACAGAGACATCCCTATCACTGGGACTGGACAAGTCATGGCGGTTAGTGGAGAGCATGGAGGCCTTGTTATTTATGATAAGGACCAAAATACCCGTATCTGGTCTGCTAACGTTACCATCTCTTCTCCCAATAGTTCCATCACAGCCAAGCTTTTGGATACGGGAAATCTTCTTGTGCTTGAAAACAATGGCAGTAGTAGCGAAACGTTGCTGTGGCAGGGCTTTGGTTATCCCACAAATACTATGCTTCCGTTTATGAAACTTGGGTTGAACCGGCGGTCCGGAAAGTTTCGGTTCCTGACATCTTGGAAATCTGAAGATGACCCGGGAATTGGGAGTTGTTCATATCGGATTGACCCAGGCGGTTTTCCTCAAATGTTTTTACAAGGGTCAAACTCCGTGGTGGCGCTGGAACTTGGACCAATTGATAGGTGGGGAGGGAGGGAGTGCGCGACATGGCATGGGGATTTGAAGGACACAAGGACTTATTTGGATGCAAACCAAGAACTATATGTGCGAGTTGATACAGTTGTTATAGGTCATGTTTTTCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

206

Amino Acids

22.32

Weight (kDa)

5.9

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 20 - 124 6.5e-25 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022296)

Species Orthologous Gene IDs
malus_domestica MD10G1308800.v1.1
rosa_laevigata RLG00000008340
rosa_roxburghii Rroxscaffold_3G00259830 Rroxscaffold_5G00353600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 512
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 3 cut(s) 101, 337, 423
AclI AACGTT 2 cut(s) 171, 266
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 4 cut(s) 44, 80, 159, 392
AgsI TTSAA 3 cut(s) 242, 331, 532
AjnI CCWGG 2 cut(s) 27, 418
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 1 cut(s) 121
AspLEI GCGC 2 cut(s) 469, 512
AspS9I GGNCC 3 cut(s) 142, 339, 479
AsuC2I CCSGG 2 cut(s) 386, 387
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 3 cut(s) 142, 339, 479
BaeI ACNNNNGTAYC 2 cut(s) 576, 609
BccI CCATC 2 cut(s) 185, 206
BciT130I CCWGG 2 cut(s) 29, 420
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 2 cut(s) 386, 387
BcoDI GTCTC 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 470
BfuI GTATCC 1 cut(s) 211
Bme1390I CCNGG 4 cut(s) 29, 386, 387, 420
Bme18I GGWCC 3 cut(s) 142, 339, 479
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 142, 339, 479
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 4 cut(s) 29, 386, 387, 420
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 90
BpuMI CCSGG 2 cut(s) 386, 387
BsaJI CCNNGG 5 cut(s) 27, 28, 385, 418, 459
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 80, 159, 392
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 85, 91
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 29, 420
BseDI CCNNGG 5 cut(s) 27, 28, 385, 418, 459
BseGI GGATG 2 cut(s) 69, 559
BseLI CCNNNNNNNGG 4 cut(s) 44, 80, 159, 392
BseNI ACTGG 2 cut(s) 85, 91
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 3 cut(s) 334, 342, 386
BslFI GGGAC 2 cut(s) 10, 97
BslI CCNNNNNNNGG 4 cut(s) 44, 80, 159, 392
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 2 cut(s) 10, 97
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 385
Bsp13I TCCGGA 1 cut(s) 341
BspACI CCGC 3 cut(s) 101, 337, 423
BspANI GGCC 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 341
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 2 cut(s) 85, 91
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 5 cut(s) 27, 28, 385, 418, 459
Bst2UI CCWGG 2 cut(s) 29, 420
Bst4CI ACNGT 2 cut(s) 39, 589
Bst6I CTCTTC 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 69, 559
BstFNI CGCG 1 cut(s) 512
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 2 cut(s) 469, 512
BstMAI GTCTC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 29, 420
BstSCI CCNGG 4 cut(s) 27, 384, 385, 418
BstUI CGCG 1 cut(s) 512
BstXI CCANNNNNNTGG 1 cut(s) 214
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 69, 559
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 2 cut(s) 469, 512
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 142, 339, 479
Cfr9I CCCGGG 1 cut(s) 385
CpoI CGGWCCG 1 cut(s) 339
Csp6I GTAC 1 cut(s) 15
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CspI CGGWCCG 1 cut(s) 339
CviAII CATG 5 cut(s) 97, 116, 516, 521, 602
CviJI RGCY 4 cut(s) 123, 206, 211, 282
CviKI_1 RGCY 4 cut(s) 123, 206, 211, 282
CviQI GTAC 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 123
Eco47I GGWCC 3 cut(s) 142, 339, 479
Eco57I CTGAAG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 27, 418
FaeI CATG 5 cut(s) 100, 119, 519, 524, 605
FaqI GGGAC 2 cut(s) 10, 97
FatI CATG 5 cut(s) 96, 115, 515, 520, 601
FokI GGATG 2 cut(s) 56, 566
GlaI GCGC 2 cut(s) 468, 511
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 1 cut(s) 123
HapII CCGG 3 cut(s) 334, 342, 386
HhaI GCGC 2 cut(s) 469, 512
Hin1II CATG 5 cut(s) 100, 119, 519, 524, 605
Hin6I GCGC 2 cut(s) 467, 510
HinP1I GCGC 2 cut(s) 467, 510
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 8
HpaII CCGG 3 cut(s) 334, 342, 386
Hpy188I TCNGA 2 cut(s) 376, 411
Hpy188III TCNNGA 2 cut(s) 342, 358
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 526
HpyCH4III ACNGT 2 cut(s) 39, 589
HpyCH4IV ACGT 2 cut(s) 171, 266
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 171, 266
Hsp92II CATG 5 cut(s) 100, 119, 519, 524, 605
HspAI GCGC 2 cut(s) 467, 510
Kpn2I TCCGGA 1 cut(s) 341
LweI GCATC 1 cut(s) 544
MaeII ACGT 2 cut(s) 171, 266
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 3 cut(s) 174, 221, 389
MfeI CAATTG 1 cut(s) 483
MluCI AATT 2 cut(s) 390, 483
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 4 cut(s) 113, 441, 491, 495
MroI TCCGGA 1 cut(s) 341
MspI CCGG 3 cut(s) 334, 342, 386
MspR9I CCNGG 4 cut(s) 29, 386, 387, 420
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 2 cut(s) 29, 420
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 258
NciI CCSGG 2 cut(s) 386, 387
NlaIII CATG 5 cut(s) 100, 119, 519, 524, 605
NlaIV GGNNCC 1 cut(s) 356
PasI CCCWGGG 1 cut(s) 28
PceI AGGCCT 1 cut(s) 123
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp1406I AACGTT 2 cut(s) 171, 266
Psp6I CCWGG 2 cut(s) 27, 418
PspGI CCWGG 2 cut(s) 27, 418
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 3 cut(s) 142, 339, 479
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
Rsr2I CGGWCCG 1 cut(s) 339
RsrII CGGWCCG 1 cut(s) 339
Sau96I GGNCC 3 cut(s) 142, 339, 479
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 4 cut(s) 29, 386, 387, 420
SetI ASST 5 cut(s) 174, 213, 269, 494, 601
SfaNI GCATC 1 cut(s) 544
SinI GGWCC 3 cut(s) 142, 339, 479
SmaI CCCGGG 1 cut(s) 387
Sse9I AATT 2 cut(s) 390, 483
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 3 cut(s) 101, 337, 423
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 4 cut(s) 27, 384, 385, 418
TaaI ACNGT 2 cut(s) 39, 589
TaiI ACGT 2 cut(s) 174, 269
TasI AATT 2 cut(s) 390, 483
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 332, 393
TspGWI ACGGA 2 cut(s) 300, 448
TspMI CCCGGG 1 cut(s) 385
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 3 cut(s) 142, 339, 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
XmaI CCCGGG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.