Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0022296

Physical Location & Seq

Genomic Coordinates Reverse (-)

31471574 .. 31485964

Gene Structure 14391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTTTTCTCAAGGATATGGCTCTAAACGAGGCTCTTTTCGCACTTGGAGTAAGAGATTTCCTCACTTGGAGAGTTGGAATTGGATTTGCAGCTAAGGATTTAAGCTCCAACGAGCCGCGCCAAGACAGTATCGAAGCTCTAGAAGTTGGGGACCGAAGCATATCGCAAACCATCGTACGGGTTGCAAACAGAGATAACCCTACTCCAATCGGTGATACCTCCGGTCTCCTAGCAATCCATGGAAATGGAAGCTTGGTCATATATGGTATGGATCAAAATACCCCTATTTGGTCGGCTAATGTTAATCTTTCTTCGCCAAACAGGTCCATTGCCAACCTTTTGGATATAGGTAATCTTGTTTTTCTTGAGAATGAGGGTAGCCAAATTGTACTTTGGGAAGGCTTTGATTATCCTTCAAATACTATGCTTCCATCTATTAAACTAGGGTTCAAAAGGCGGTGCGGGTTGGGTTGGTTCTTAACATCTTGGAAGTCTCAAGATGACACGGGTACCGGAGCTCGTATACCGATTTCACTCAAGTGGACTTCCGCAGCTGATTTTGTACAAGGATGGAGCAATATTGTGGCGAGCTGGATCTTGGACCGGTGTGTGAGTGGTCAAATTTTGCTGGACCCCCAATTAAGGCTATTAACTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

220

Amino Acids

24.17

Weight (kDa)

5.0

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	58 - 165	1.3e-26	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022296)

Species	Orthologous Gene IDs
malus_domestica	MD10G1308800.v1.1
rosa_laevigata	RLG00000008340
rosa_roxburghii	Rroxscaffold_3G00259830 Rroxscaffold_5G00353600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	526
AccII	CGCG	1 cut(s)	121
AciI	CCGC	4 cut(s)	119, 460, 465, 552
AclWI	GGATC	2 cut(s)	282, 605
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	4 cut(s)	180, 393, 514, 567
AfiI	CCNNNNNNNGG	3 cut(s)	180, 291, 645
AgeI	ACCGGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	420, 454
AleI	CACNNNNGTG	1 cut(s)	541
AluBI	AGCT	7 cut(s)	95, 108, 140, 255, 521, 557, 594
AluI	AGCT	7 cut(s)	95, 108, 140, 255, 521, 557, 594
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	233, 501
AlwI	GGATC	2 cut(s)	282, 605
ApeKI	GCWGC	2 cut(s)	92, 554
ApoI	RAATTY	1 cut(s)	624
AsiGI	ACCGGT	1 cut(s)	606
Asp718I	GGTACC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	4 cut(s)	154, 327, 604, 634
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	4 cut(s)	154, 327, 604, 634
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	104, 566
BccI	CCATC	3 cut(s)	182, 442, 567
BcoDI	GTCTC	2 cut(s)	233, 501
BfaI	CTAG	3 cut(s)	143, 233, 446
BisI	GCNGC	3 cut(s)	93, 119, 555
BlsI	GCNGC	3 cut(s)	94, 120, 556
Bme18I	GGWCC	4 cut(s)	154, 327, 604, 634
BmgT120I	GGNCC	4 cut(s)	154, 327, 604, 634
BmiI	GGNNCC	3 cut(s)	155, 514, 636
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	3 cut(s)	389, 483, 524
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	3 cut(s)	224, 515, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 291, 645
Bse118I	RCCGGY	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	3 cut(s)	180, 291, 645
BseMI	GCAATG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	104, 566
Bsh1236I	CGCG	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	512
BshTI	ACCGGT	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	3 cut(s)	225, 516, 607
BsiWI	CGTACG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	180, 291, 645
BsmAI	GTCTC	2 cut(s)	233, 501
BsmFI	GGGAC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	565
Bsp143I	GATC	2 cut(s)	274, 597
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	4 cut(s)	119, 460, 465, 552
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	155, 514, 636
BspPI	GGATC	2 cut(s)	282, 605
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	606
BsrGI	TGTACA	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	274, 597
BssNAI	GTATAC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	277, 600
BstMAI	GTCTC	2 cut(s)	233, 501
BstMBI	GATC	2 cut(s)	274, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	104, 566
BstX2I	RGATCY	1 cut(s)	597
BstXI	CCANNNNNNTGG	2 cut(s)	248, 343
BstYI	RGATCY	1 cut(s)	597
BstZ17I	GTATAC	1 cut(s)	527
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	578
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	4 cut(s)	154, 327, 604, 634
Csp6I	GTAC	4 cut(s)	179, 392, 513, 566
CspAI	ACCGGT	1 cut(s)	606
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	4 cut(s)	179, 392, 513, 566
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	276, 599
DpnII	GATC	2 cut(s)	274, 597
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	4 cut(s)	154, 327, 604, 634
Eco53kI	GAGCTC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	245
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	458
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	93, 119, 555
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	3 cut(s)	93, 119, 555
FspBI	CTAG	3 cut(s)	143, 233, 446
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	93, 119, 555
HapII	CCGG	3 cut(s)	225, 516, 607
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	253
HpaII	CCGG	3 cut(s)	225, 516, 607
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	527, 546
Hpy188III	TCNNGA	3 cut(s)	143, 368, 500
Hpy8I	GTNNAC	2 cut(s)	527, 546
HpyAV	CCTTC	2 cut(s)	395, 426
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	92, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	274, 597
LmnI	GCTCC	3 cut(s)	113, 518, 576
LpnPI	CCDG	6 cut(s)	238, 310, 529, 580, 617, 620
Lsp1109I	GCAGC	2 cut(s)	104, 566
MaeI	CTAG	3 cut(s)	143, 233, 446
MalI	GATC	2 cut(s)	276, 599
MboI	GATC	2 cut(s)	274, 597
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	1 cut(s)	597
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	4 cut(s)	81, 387, 624, 641
MmeI	TCCRAC	2 cut(s)	58, 135
MnlI	CCTC	4 cut(s)	25, 74, 232, 370
MseI	TTAA	6 cut(s)	104, 306, 441, 482, 644, 653
MslI	CAYNNNNRTG	2 cut(s)	246, 541
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	225, 516, 607
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	2 cut(s)	274, 597
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	3 cut(s)	155, 514, 636
OliI	CACNNNNGTG	1 cut(s)	541
Pfl23II	CGTACG	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	606
PkrI	GCNGC	3 cut(s)	94, 120, 556
Psp124BI	GAGCTC	1 cut(s)	523
PspLI	CGTACG	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	155, 514, 636
PspPI	GGNCC	4 cut(s)	154, 327, 604, 634
PsuI	RGATCY	1 cut(s)	597
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	4 cut(s)	180, 393, 514, 567
RsaNI	GTAC	4 cut(s)	179, 392, 513, 566
RseI	CAYNNNNRTG	2 cut(s)	246, 541
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	6 cut(s)	104, 306, 441, 482, 644, 653
SatI	GCNGC	3 cut(s)	93, 119, 555
Sau3AI	GATC	2 cut(s)	274, 597
Sau96I	GGNCC	4 cut(s)	154, 327, 604, 634
SduI	GDGCHC	1 cut(s)	523
SinI	GGWCC	4 cut(s)	154, 327, 604, 634
SmiMI	CAYNNNNRTG	2 cut(s)	246, 541
SmlI	CTYRAG	4 cut(s)	11, 368, 498, 539
SmoI	CTYRAG	4 cut(s)	11, 368, 498, 539
Sse9I	AATT	4 cut(s)	81, 387, 624, 641
SsiI	CCGC	4 cut(s)	119, 460, 465, 552
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	3 cut(s)	143, 233, 446
SstI	GAGCTC	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	135
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	4 cut(s)	81, 387, 624, 641
TatI	WGTACW	2 cut(s)	391, 565
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	6 cut(s)	104, 306, 441, 482, 644, 653
Tru9I	TTAA	6 cut(s)	104, 306, 441, 482, 644, 653
TseI	GCWGC	2 cut(s)	92, 554
VpaK11BI	GGWCC	4 cut(s)	154, 327, 604, 634
XapI	RAATTY	1 cut(s)	624
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	3 cut(s)	143, 233, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.