Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0022295

Physical Location & Seq

Genomic Coordinates Reverse (-)

39581584 .. 39582737

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1310900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAATAAAGTTTCACAAGTGGGCAGATTTTTGTAAAGCATTATTGGTGGAGGCAGAGTGGTACAATAAGAGCCAGACACCTATCCTTGAAGAGTACCTAAGAAATGGGTGCATTTCATCATCAGTTTCAGAGCTTTTGGTTCACACAGTTTTCTCTACAATTCATGAGGGAACCAGAGAGATGGCTGATTTTCTCCCCAAGAACGAAGATCTTTTGTATAATATCTCTCTCATCGTTCGCCTCACCAATGATTTGGGAACTTCCGCGAGGGGATTCTCCTTCATCAATCCTATGTTACATGAGAGAAGTGAAAATGCTAGGAAGAACATTAAGGGCATGATAGACAAGGCATGGAAGAAAATAAATGGAAAATGCTTCACAACAAACCAAGTGCCTTTTCTGTCATCGTTCAGCAACACTGCCACAAATATGGCTCGAGTGGCGCACAGCCTTTACCAAGATGGAGATGGATTTGGTGACCAAGAGAAAGGGACTCGGACCCATCTCCTGTCTTTACTATTCGAACCTCTTGTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

181

Amino Acids

20.44

Weight (kDa)

7.01

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_syn_C_2	PF19086	6 - 120	4.2e-16	Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C	PF03936	7 - 121	1.9e-21	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022295)

Species	Orthologous Gene IDs
malus_domestica	MD10G1310900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0029191
rosa_roxburghii	Rroxscaffold_1G00070910
rosa_samantha	Rh5CG224900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	65, 98
AgsI	TTSAA	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	238, 491
AsuII	TTCGAA	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	501
BccI	CCATC	4 cut(s)	178, 458, 464, 513
BfaI	CTAG	2 cut(s)	321, 541
BglII	AGATCT	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	175, 503
Bpu14I	TTCGAA	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsh1236I	CGCG	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	175, 503
BspT104I	TTCGAA	1 cut(s)	525
BssMI	GATC	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	525
BstDEI	CTNAG	1 cut(s)	101
BstEII	GGTNACC	1 cut(s)	479
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstPI	GGTNACC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	3 cut(s)	184, 256, 433
BstYI	RGATCY	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	64, 97
CviAII	CATG	4 cut(s)	167, 302, 340, 354
CviJI	RGCY	5 cut(s)	75, 136, 188, 437, 453
CviKI_1	RGCY	5 cut(s)	75, 136, 188, 437, 453
CviQI	GTAC	2 cut(s)	64, 97
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
FaeI	CATG	4 cut(s)	170, 305, 343, 357
FaiI	YATR	7 cut(s)	168, 222, 296, 303, 341, 355, 434
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	4 cut(s)	166, 301, 339, 353
FspBI	CTAG	2 cut(s)	321, 541
GlaI	GCGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	170, 305, 343, 357
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	2 cut(s)	276, 496
HphI	GGTGA	2 cut(s)	238, 491
Hpy166II	GTNNAC	2 cut(s)	145, 538
Hpy188I	TCNGA	2 cut(s)	133, 501
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	145, 538
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	4 cut(s)	170, 305, 343, 357
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	89, 190, 524
MaeI	CTAG	2 cut(s)	321, 541
MaeIII	GTNAC	2 cut(s)	297, 479
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	104, 221, 337, 370
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	490
MnlI	CCTC	5 cut(s)	46, 163, 254, 264, 540
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	4 cut(s)	170, 305, 343, 357
NlaIV	GGNNCC	2 cut(s)	175, 503
NmuCI	GTSAC	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	438
PagI	TCATGA	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	175, 503
PspPI	GGNCC	1 cut(s)	501
PspXI	VCTCGAGB	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	65, 98
RsaNI	GTAC	2 cut(s)	64, 97
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	1 cut(s)	490
SetI	ASST	4 cut(s)	85, 102, 138, 532
Sfr274I	CTCGAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	525
SinI	GGWCC	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	2 cut(s)	321, 541
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	439, 525
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	108, 155, 274
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XhoI	CTCGAG	1 cut(s)	438
XspI	CTAG	2 cut(s)	321, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.