Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0022295

Physical Location & Seq

Genomic Coordinates Forward (+)

91885700 .. 91886230

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTTCTTCTCCACAACACATGATGAAGGGGCCAAAAACATTACTGATTTTCTGCACAAGAATGAAGATCTCTTTGATACTTCGACTCTTAAACGATCTGGGAACTTCCGCGGCTGGGCAAGAGAGAAGTGATGCTGCTTCATCAATCCTATGTTACATGAGAGAAGTGAATGCTTCAGAAGAAATCTCTCCAATCAAAGGCATGATAGACAATGCATGGAAGAAAATAAATGAAAAATGCTTCTCTCAAATGCCCGAAATATCTTCATTCATCAACATTATGACAAATATAGCTCGGGTTGGGCATAGCCTTTATCAAGATGGAGATGGATTTGGTGATCAAGAGCACGAGACTCCGGGACAAATCCAGTCTTTACTAGTTGAACCTCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

132

Amino Acids

14.63

Weight (kDa)

5.55

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	24 - 76	2.6e-10	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	24 - 76	8.3e-08	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022295)

Species	Orthologous Gene IDs
malus_domestica	MD10G1310900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0029191
rosa_roxburghii	Rroxscaffold_1G00070910
rosa_samantha	Rh5CG224900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 113
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	117, 200
AgsI	TTSAA	1 cut(s)	386
AhlI	ACTAGT	1 cut(s)	379
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	297
BauI	CACGAG	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	317, 323
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	2 cut(s)	114, 138
BlsI	GCNGC	2 cut(s)	115, 139
Bme1390I	CCNGG	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 200
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	117, 200
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	117, 200
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	69, 97, 340
BspACI	CCGC	2 cut(s)	111, 113
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	69, 97, 340
BssSI	CACGAG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	72, 100, 343
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	69, 97, 340
BstSCI	CCNGG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	32
Cfr42I	CCGCGG	1 cut(s)	114
CviAII	CATG	4 cut(s)	22, 160, 205, 219
CviJI	RGCY	4 cut(s)	34, 116, 296, 312
CviKI_1	RGCY	4 cut(s)	34, 116, 296, 312
DpnI	GATC	3 cut(s)	71, 99, 342
DpnII	GATC	3 cut(s)	69, 97, 340
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	4 cut(s)	25, 163, 208, 222
FaiI	YATR	8 cut(s)	23, 154, 161, 206, 220, 284, 293, 309
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	21, 159, 204, 218
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	114, 138
Fsp4HI	GCNGC	2 cut(s)	114, 138
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	2 cut(s)	114, 138
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	4 cut(s)	25, 163, 208, 222
HinfI	GANTC	2 cut(s)	87, 355
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	320, 344
HpyAV	CCTTC	2 cut(s)	15, 22
HpyCH4V	TGCA	2 cut(s)	57, 218
Hsp92II	CATG	4 cut(s)	25, 163, 208, 222
Ksp22I	TGATCA	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	69, 97, 340
LpnPI	CCDG	4 cut(s)	86, 102, 372, 383
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	71, 99, 342
MboI	GATC	3 cut(s)	69, 97, 340
MboII	GAAGA	4 cut(s)	79, 194, 235, 258
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	81, 349
MnlI	CCTC	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	2 cut(s)	92, 397
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	113
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	69, 97, 340
NlaIII	CATG	4 cut(s)	25, 163, 208, 222
NlaIV	GGNNCC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	115, 139
PleI	GAGTC	2 cut(s)	81, 349
PpsI	GAGTC	2 cut(s)	81, 349
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	62
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	92, 397
SatI	GCNGC	2 cut(s)	114, 138
Sau3AI	GATC	3 cut(s)	69, 97, 340
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	81, 349
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	2 cut(s)	298, 391
SfaNI	GCATC	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	379
SsiI	CCGC	2 cut(s)	111, 113
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	358
TaqI	TCGA	1 cut(s)	85
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	92, 397
Tru9I	TTAA	2 cut(s)	92, 397
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	6 cut(s)	41, 80, 132, 249, 258, 262
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.