Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022295

Physical Location & Seq

Genomic Coordinates Reverse (-)

22901234 .. 22901852

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTATCCGAATAGGATACGCACGTATCCGATCCGTATCCAAATCAGGATACGCATTTCCGGCCGTTTCCGAGCTTTTCCGACGCGTTTCGTACCCGTTTCCCTTTTCGATACGGGATACGCGGGCATTTTCGCGTTTCCGTGCATCCTAGGAATGGATGAATTTTTGCACAAGAATGAAGATCTCGTGTACAATATCTCTCTAATACTTCGACTCTTAAATGATCTGGGAACTTCTGTGAGGCGATGTTGCTTCATCAATCCTATGCTACATGAGAGAAGTGAATGCTTCAGAAGAATAGCTCGAAAGCACATCAAATGCATGATAGACAATGCATGGAAGAAAATAAATGAAAAATGCTTCACTCAAGTTCCTGATATTTCTTCATTCTTCAACATTACCACAAATATAGCTCCAGTTGGTCACAGCCTTTATCAAGATAGAGATGGATTTGGTGATCAAGAGCAAGGGACTCGGGGAAAGATCCAAACTTTACTAGTTGAACCGCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

171

Amino Acids

19.91

Weight (kDa)

9.44

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022295)

Species	Orthologous Gene IDs
malus_domestica	MD10G1310900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0029191
rosa_roxburghii	Rroxscaffold_1G00070910
rosa_samantha	Rh5CG224900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	85, 122, 134
AciI	CCGC	2 cut(s)	122, 506
AclWI	GGATC	2 cut(s)	25, 478
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	2 cut(s)	93, 191
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	394, 503
AhlI	ACTAGT	1 cut(s)	496
AluBI	AGCT	3 cut(s)	74, 302, 413
AluI	AGCT	3 cut(s)	74, 302, 413
AlwI	GGATC	2 cut(s)	25, 478
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	474
AvrII	CCTAGG	1 cut(s)	148
BaeI	ACNNNNGTAYC	4 cut(s)	8, 8, 41, 41
BauI	CACGAG	1 cut(s)	185
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciVI	GTATCC	6 cut(s)	9, 15, 36, 42, 47, 110
BclI	TGATCA	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	2 cut(s)	149, 497
BfuI	GTATCC	6 cut(s)	9, 15, 36, 42, 47, 110
BglII	AGATCT	1 cut(s)	181
BlnI	CCTAGG	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	416
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	144, 163
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	416
BseX3I	CGGCCG	1 cut(s)	61
Bsh1236I	CGCG	3 cut(s)	85, 122, 134
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	30, 181, 223, 457, 483
BspACI	CCGC	2 cut(s)	122, 506
BspANI	GGCC	1 cut(s)	63
BspFNI	CGCG	3 cut(s)	85, 122, 134
BspPI	GGATC	2 cut(s)	25, 478
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	5 cut(s)	30, 181, 223, 457, 483
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	144, 163
BstFNI	CGCG	3 cut(s)	85, 122, 134
BstKTI	GATC	5 cut(s)	33, 184, 226, 460, 486
BstMBI	GATC	5 cut(s)	30, 181, 223, 457, 483
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstUI	CGCG	3 cut(s)	85, 122, 134
BstX2I	RGATCY	2 cut(s)	181, 483
BstYI	RGATCY	2 cut(s)	181, 483
BstZI	CGGCCG	1 cut(s)	61
BsuI	GTATCC	6 cut(s)	9, 15, 36, 42, 47, 110
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	144, 163
Cac8I	GCNNGC	1 cut(s)	124
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	92, 190
CviAII	CATG	3 cut(s)	272, 322, 336
CviJI	RGCY	5 cut(s)	63, 74, 302, 413, 429
CviKI_1	RGCY	5 cut(s)	63, 74, 302, 413, 429
CviQI	GTAC	2 cut(s)	92, 190
DpnI	GATC	5 cut(s)	32, 183, 225, 459, 485
DpnII	GATC	5 cut(s)	30, 181, 223, 457, 483
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	148
Eco52I	CGGCCG	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	2 cut(s)	323, 337
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	275, 325, 339
FaiI	YATR	5 cut(s)	266, 273, 323, 337, 410
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	271, 321, 335
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	457
FokI	GGATG	2 cut(s)	131, 170
FspBI	CTAG	2 cut(s)	149, 497
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	275, 325, 339
HinfI	GANTC	2 cut(s)	213, 472
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	9, 30, 71, 81, 293
Hpy188III	TCNNGA	4 cut(s)	46, 374, 437, 461
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	144, 169, 321, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	275, 325, 339
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	30, 181, 223, 457, 483
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	5 cut(s)	31, 73, 212, 387, 429
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	149, 497
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	5 cut(s)	32, 183, 225, 459, 485
MboI	GATC	5 cut(s)	30, 181, 223, 457, 483
MboII	GAAGA	5 cut(s)	191, 306, 352, 375, 382
MflI	RGATCY	2 cut(s)	181, 483
MluCI	AATT	1 cut(s)	161
MluI	ACGCGT	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	207, 466
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	234
Mph1103I	ATGCAT	2 cut(s)	323, 337
MseI	TTAA	2 cut(s)	218, 514
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	290
MvnI	CGCG	3 cut(s)	85, 122, 134
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	5 cut(s)	30, 181, 223, 457, 483
NlaIII	CATG	3 cut(s)	275, 325, 339
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	2 cut(s)	323, 337
PctI	GAATGC	1 cut(s)	290
PleI	GAGTC	2 cut(s)	207, 466
PpsI	GAGTC	2 cut(s)	207, 466
Ppu21I	YACGTR	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	181, 483
RsaI	GTAC	2 cut(s)	93, 191
RsaNI	GTAC	2 cut(s)	92, 190
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	218, 514
Sau3AI	GATC	5 cut(s)	30, 181, 223, 457, 483
SchI	GAGTC	2 cut(s)	207, 466
SetI	ASST	4 cut(s)	26, 76, 304, 415
SfaNI	GCATC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	496
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	2 cut(s)	122, 506
SspMI	CTAG	2 cut(s)	149, 497
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	108, 211, 304
TasI	AATT	1 cut(s)	161
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	218, 514
Tru9I	TTAA	2 cut(s)	218, 514
TseFI	GTSAC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	5 cut(s)	174, 192, 244, 366, 375
TspGWI	ACGGA	2 cut(s)	23, 129
XapI	RAATTY	1 cut(s)	161
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 497
Zsp2I	ATGCAT	2 cut(s)	323, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.