MD11G1015500.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0022436
Physical Location & Seq
Reverse (-)
1227004 .. 1227333
330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1015500.v1.1.491

Sequence Viewer

Length: 330 bp
ATGCTATCTGATATGCAACATGTATGTCTTGTGAATGGCGATGGCAACGAAGTATCGGCGCTTGACCAAAATTCGAATGATCTATTTGACAACCACTACTTCCAGAACTTACTCGATGGAAAGGGTCTTCTTCGTTCTGACCAAATTCTATTTAGTAGTGATGATGAATCCGTTTCAATGATGACCAGAGCTCTTGTTGACAGCTACAGAAGAAACCCTAAGCTTTTCTTTGATGACGTTGTTAAGTCCATGATCAAGATGGGAAATATTAGTCCACTTACTGGTTTGAGTGGACAAATTCGGAAGAATTGCAGAGCGGTTAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

5.14

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 3 - 71 1.3e-10 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022436)

Species Orthologous Gene IDs
malus_domestica MD11G1015500.v1.1
rosa_chinensis RchiOBHm_Chr5g0080851
rosa_roxburghii Rroxscaffold_1G00002610
rosa_samantha Rh5CG570800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 317
AciI CCGC 1 cut(s) 317
AcsI RAATTY 3 cut(s) 70, 144, 297
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 1 cut(s) 177
AluBI AGCT 3 cut(s) 191, 204, 223
AluI AGCT 3 cut(s) 191, 204, 223
Alw21I GWGCWC 1 cut(s) 193
ApoI RAATTY 3 cut(s) 70, 144, 297
AspLEI GCGC 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 193
BccI CCATC 3 cut(s) 35, 110, 253
BclI TGATCA 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 79, 252
BspACI CCGC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 286
BssMI GATC 2 cut(s) 79, 252
BstBI TTCGAA 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 82, 255
BstMBI GATC 2 cut(s) 79, 252
BstNSI RCATGY 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 54
CfoI GCGC 1 cut(s) 61
CviAII CATG 2 cut(s) 20, 250
CviJI RGCY 3 cut(s) 191, 204, 223
CviKI_1 RGCY 3 cut(s) 191, 204, 223
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 81, 254
DpnII GATC 2 cut(s) 79, 252
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 2 cut(s) 23, 253
FaiI YATR 5 cut(s) 14, 21, 25, 251, 328
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 19, 249
FbaI TGATCA 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 193
GlaI GCGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 62
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 23, 253
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 199, 275, 293
Hpy188I TCNGA 3 cut(s) 10, 139, 303
Hpy188III TCNNGA 2 cut(s) 103, 256
Hpy8I GTNNAC 3 cut(s) 199, 275, 293
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 16, 312
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 23, 253
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 79, 252
LpnPI CCDG 3 cut(s) 116, 199, 267
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 81, 254
MbiI CCGCTC 1 cut(s) 317
MboI GATC 2 cut(s) 79, 252
MboII GAAGA 4 cut(s) 119, 122, 222, 316
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 5 cut(s) 70, 144, 297, 307, 322
MseI TTAA 2 cut(s) 243, 321
NdeII GATC 2 cut(s) 79, 252
NlaIII CATG 2 cut(s) 23, 253
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 74
PciI ACATGT 1 cut(s) 19
PfeI GAWTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 281
PscI ACATGT 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 243, 321
Sau3AI GATC 2 cut(s) 79, 252
SduI GDGCHC 1 cut(s) 193
SetI ASST 4 cut(s) 193, 206, 225, 240
SfcI CTRYAG 1 cut(s) 205
SfuI TTCGAA 1 cut(s) 74
Sse9I AATT 5 cut(s) 70, 144, 297, 307, 322
SsiI CCGC 1 cut(s) 317
SspI AATATT 1 cut(s) 268
SstI GAGCTC 1 cut(s) 193
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 74, 114
TasI AATT 5 cut(s) 70, 144, 297, 307, 322
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 243, 321
Tru9I TTAA 2 cut(s) 243, 321
TspDTI ATGAA 2 cut(s) 180, 315
TspGWI ACGGA 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 281
XapI RAATTY 3 cut(s) 70, 144, 297
XceI RCATGY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.