RchiOBHm_Chr5g0080851

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
86879459 .. 86880875
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35513

Sequence Viewer

Length: 606 bp
ATGCTATCAAATATATCCGAAATGCGAATGGCTGCTTCTTTGCTTCGGCTGCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGATACTACTCGATTTACCTGATGGTGAGAAGTCTGCCTTTCCGAACGTGAATTCAGCGAGAGGGTTTGAAGTTATCGATGCAATCAAGAGCTCCGTGGAGAGAGCTGGGTTAGCAAGGTGTGCAAATTTCAGCAACAGATTGTTCAACTTCGAAGAAACAGGTGGTCCAGACAGCACGTTAGATTCAAGTATGGCAACTGATCTACAGAACCTATGCCCTGTGACCAGCGACGGAAACAACACCGCGGCTCTTGATCGGAACTCTAGAGATCTATTCGATAACCATTACTTTCAGAACTTGCTCACCGGAAAGGGCCTTCTCGGTTCTGATCAGCTTTTATTTTCTAGTGATTTAGCCGATACAACAAGTACCAAAAGCTTGGTCCAAAGCTATAGCTCTAGTTCCAACCTTTTCCTGACAGATTTTGCTAATTCTATGATCAAAATGGGAAGTATAAGTCCACTCACCGGGTCTGCTGGAGAGATAAGAAAGAACTGCAGGGTTGTTAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

201

Amino Acids

21.7

Weight (kDa)

4.85

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 8 - 65 1.4e-18 Peroxidase
peroxidase PF00141 66 - 163 2.7e-16 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022436)

Species Orthologous Gene IDs
malus_domestica MD11G1015500.v1.1
rosa_chinensis RchiOBHm_Chr5g0080851
rosa_roxburghii Rroxscaffold_1G00002610
rosa_samantha Rh5CG570800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AccII CGCG 1 cut(s) 335
AciI CCGC 2 cut(s) 333, 335
AcsI RAATTY 2 cut(s) 139, 214
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 3 cut(s) 158, 235, 276
AluBI AGCT 6 cut(s) 180, 194, 424, 468, 480, 486
AluI AGCT 6 cut(s) 180, 194, 424, 468, 480, 486
Alw21I GWGCWC 1 cut(s) 182
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 2 cut(s) 32, 49
ApoI RAATTY 2 cut(s) 139, 214
ArsI GACNNNNNNTTYG 2 cut(s) 456, 488
AspS9I GGNCC 3 cut(s) 254, 403, 472
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 125, 385, 547
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 2 cut(s) 254, 472
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 19, 36
BccI CCATC 1 cut(s) 104
BclI TGATCA 2 cut(s) 418, 528
BcnI CCSGG 1 cut(s) 559
BfaI CTAG 3 cut(s) 354, 435, 489
BfmI CTRYAG 3 cut(s) 293, 481, 586
BglII AGATCT 1 cut(s) 358
BisI GCNGC 3 cut(s) 33, 50, 336
BlsI GCNGC 3 cut(s) 34, 51, 337
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 2 cut(s) 254, 472
BmgT120I GGNCC 3 cut(s) 254, 403, 472
BmrFI CCNGG 1 cut(s) 559
BmsI GCATC 2 cut(s) 73, 157
BpmI CTGGAG 1 cut(s) 588
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 559
Bsa29I ATCGAT 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 183, 333
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 557
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 183, 333
BseLI CCNNNNNNNGG 1 cut(s) 557
BseXI GCAGC 2 cut(s) 19, 36
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 396, 558
BslI CCNNNNNNNGG 1 cut(s) 557
BsnI GGCC 1 cut(s) 405
Bsp119I TTCGAA 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 5 cut(s) 289, 343, 358, 418, 528
BspACI CCGC 2 cut(s) 333, 335
BspANI GGCC 1 cut(s) 405
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 602
BspMAI CTGCAG 1 cut(s) 590
BspT104I TTCGAA 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 183, 333
BssMI GATC 5 cut(s) 289, 343, 358, 418, 528
Bst4CI ACNGT 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 240
BstDSI CCRYGG 2 cut(s) 183, 333
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 5 cut(s) 292, 346, 361, 421, 531
BstMBI GATC 5 cut(s) 289, 343, 358, 418, 528
BstMWI GCNNNNNNNGC 3 cut(s) 49, 200, 209
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 3 cut(s) 293, 481, 586
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 19, 36
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 358
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 1 cut(s) 405
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 2 cut(s) 183, 333
CciI TCATGA 1 cut(s) 602
Cfr13I GGNCC 3 cut(s) 254, 403, 472
Cfr42I CCGCGG 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 459
CviAII CATG 1 cut(s) 603
CviQI GTAC 1 cut(s) 459
DpnI GATC 5 cut(s) 291, 345, 360, 420, 530
DpnII GATC 5 cut(s) 289, 343, 358, 418, 528
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 254, 472
Eco53kI GAGCTC 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 182
FaeI CATG 1 cut(s) 606
FaiI YATR 7 cut(s) 14, 281, 304, 483, 527, 545, 604
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 1 cut(s) 602
FbaI TGATCA 2 cut(s) 418, 528
Fnu4HI GCNGC 3 cut(s) 33, 50, 336
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 33, 50, 336
FspBI CTAG 3 cut(s) 354, 435, 489
GluI GCNGC 3 cut(s) 33, 50, 336
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 1 cut(s) 405
HapII CCGG 2 cut(s) 396, 558
HgaI GACGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 606
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 1 cut(s) 272
HpaII CCGG 2 cut(s) 396, 558
HphI GGTGA 3 cut(s) 125, 385, 547
Hpy166II GTNNAC 2 cut(s) 73, 551
Hpy188I TCNGA 5 cut(s) 19, 132, 348, 384, 418
Hpy188III TCNNGA 6 cut(s) 175, 257, 341, 354, 505, 603
Hpy8I GTNNAC 2 cut(s) 73, 551
Hpy99I CGWCG 2 cut(s) 91, 323
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 2 cut(s) 135, 266
HpyCH4V TGCA 4 cut(s) 52, 170, 212, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 200, 209
HpySE526I ACGT 2 cut(s) 135, 266
Hsp92II CATG 1 cut(s) 606
Ksp22I TGATCA 2 cut(s) 418, 528
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 5 cut(s) 289, 343, 358, 418, 528
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 2 cut(s) 19, 36
LweI GCATC 2 cut(s) 73, 157
MaeI CTAG 3 cut(s) 354, 435, 489
MaeII ACGT 2 cut(s) 135, 266
MaeIII GTNAC 1 cut(s) 310
MalI GATC 5 cut(s) 291, 345, 360, 420, 530
MboI GATC 5 cut(s) 289, 343, 358, 418, 528
MboII GAAGA 1 cut(s) 254
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 4 cut(s) 139, 214, 520, 598
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 1 cut(s) 143
MseI TTAA 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 396, 558
MspR9I CCNGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 49, 200, 209
NciI CCSGG 1 cut(s) 559
NdeII GATC 5 cut(s) 289, 343, 358, 418, 528
NlaIII CATG 1 cut(s) 606
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 240
PagI TCATGA 1 cut(s) 602
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 34, 51, 337
Psp124BI GAGCTC 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 194
PspPI GGNCC 3 cut(s) 254, 403, 472
PstI CTGCAG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SacI GAGCTC 1 cut(s) 182
SacII CCGCGG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 3 cut(s) 33, 50, 336
Sau3AI GATC 5 cut(s) 289, 343, 358, 418, 528
Sau96I GGNCC 3 cut(s) 254, 403, 472
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 182
SfaNI GCATC 2 cut(s) 73, 157
SfcI CTRYAG 3 cut(s) 293, 481, 586
Sfr303I CCGCGG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 2 cut(s) 254, 472
Sse9I AATT 4 cut(s) 139, 214, 520, 598
SsiI CCGC 2 cut(s) 333, 335
SspMI CTAG 3 cut(s) 354, 435, 489
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 557
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 2 cut(s) 138, 269
TaqI TCGA 5 cut(s) 89, 99, 165, 240, 366
TasI AATT 4 cut(s) 139, 214, 520, 598
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 32, 49
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 591
TspGWI ACGGA 2 cut(s) 172, 336
VpaK11BI GGWCC 2 cut(s) 254, 472
XapI RAATTY 2 cut(s) 139, 214
XbaI TCTAGA 1 cut(s) 353
XspI CTAG 3 cut(s) 354, 435, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.