Rh5CG570800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022436
Physical Location & Seq
Forward (+)
80645681 .. 80646007
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG570800.1

Sequence Viewer

Length: 327 bp
ATGGCAACTGATCTACAGAACCTATGCCCTGTGACCAGCAACGGAAACAACACTGCGGCTCTTGATCGGAACTCTAGAGATTTATTCGACAACCTTTACTTTCAGAACTTGCTCACCGGAAAGGGCTTTCTCGGTTCTGATCAGATTTTATTTTCTAGTGATTTAGCCGAAACAACAAGTACCAAGAGCTTGGTCCAAAGCTATAGCTCTAGTTCCAACCTTTTCCTGACAGATTTTGCTAATTCTATGATCAAAATGGGAAGTATAGGTCCACTCACCGGGTCTGCTGGAGAGATAAGAAAGAACTGCAGCGTTGTTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

108

Amino Acids

11.54

Weight (kDa)

4.72

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 70 2.8e-09 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022436)

Species Orthologous Gene IDs
malus_domestica MD11G1015500.v1.1
rosa_chinensis RchiOBHm_Chr5g0080851
rosa_roxburghii Rroxscaffold_1G00002610
rosa_samantha Rh5CG570800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 278
AluBI AGCT 3 cut(s) 189, 201, 207
AluI AGCT 3 cut(s) 189, 201, 207
ApeKI GCWGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 193, 269
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 106, 268
AvaII GGWCC 2 cut(s) 193, 269
BbvI GCAGC 1 cut(s) 321
BclI TGATCA 2 cut(s) 139, 249
BcnI CCSGG 1 cut(s) 280
BfaI CTAG 3 cut(s) 75, 156, 210
BfmI CTRYAG 3 cut(s) 14, 202, 307
BisI GCNGC 2 cut(s) 57, 310
BlsI GCNGC 2 cut(s) 58, 311
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 2 cut(s) 193, 269
BmgT120I GGNCC 2 cut(s) 193, 269
BmrFI CCNGG 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 117, 279
BslI CCNNNNNNNGG 1 cut(s) 278
Bsp143I GATC 4 cut(s) 10, 64, 139, 249
BspACI CCGC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 311
BssMI GATC 4 cut(s) 10, 64, 139, 249
BstKTI GATC 4 cut(s) 13, 67, 142, 252
BstMBI GATC 4 cut(s) 10, 64, 139, 249
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 3 cut(s) 14, 202, 307
BstV1I GCAGC 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 193, 269
Csp6I GTAC 1 cut(s) 180
CviJI RGCY 6 cut(s) 59, 126, 167, 189, 201, 207
CviKI_1 RGCY 6 cut(s) 59, 126, 167, 189, 201, 207
CviQI GTAC 1 cut(s) 180
DpnI GATC 4 cut(s) 12, 66, 141, 251
DpnII GATC 4 cut(s) 10, 64, 139, 249
Eco47I GGWCC 2 cut(s) 193, 269
FaiI YATR 4 cut(s) 25, 204, 248, 266
FbaI TGATCA 2 cut(s) 139, 249
Fnu4HI GCNGC 2 cut(s) 57, 310
Fsp4HI GCNGC 2 cut(s) 57, 310
FspBI CTAG 3 cut(s) 75, 156, 210
GluI GCNGC 2 cut(s) 57, 310
GsuI CTGGAG 1 cut(s) 309
HapII CCGG 2 cut(s) 117, 279
HpaII CCGG 2 cut(s) 117, 279
HphI GGTGA 2 cut(s) 106, 268
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 4 cut(s) 69, 105, 139, 144
Hpy188III TCNNGA 4 cut(s) 62, 75, 226, 324
Hpy8I GTNNAC 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 309
Ksp22I TGATCA 2 cut(s) 139, 249
Kzo9I GATC 4 cut(s) 10, 64, 139, 249
LpnPI CCDG 6 cut(s) 42, 49, 130, 239, 273, 292
Lsp1109I GCAGC 1 cut(s) 321
MaeI CTAG 3 cut(s) 75, 156, 210
MaeIII GTNAC 1 cut(s) 31
MalI GATC 4 cut(s) 12, 66, 141, 251
MboI GATC 4 cut(s) 10, 64, 139, 249
MluCI AATT 2 cut(s) 241, 319
MmeI TCCRAC 1 cut(s) 240
MseI TTAA 1 cut(s) 318
MspI CCGG 2 cut(s) 117, 279
MspR9I CCNGG 1 cut(s) 280
NciI CCSGG 1 cut(s) 280
NdeII GATC 4 cut(s) 10, 64, 139, 249
NmuCI GTSAC 1 cut(s) 31
PkrI GCNGC 2 cut(s) 58, 311
PspPI GGNCC 2 cut(s) 193, 269
PstI CTGCAG 1 cut(s) 311
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 57, 310
Sau3AI GATC 4 cut(s) 10, 64, 139, 249
Sau96I GGNCC 2 cut(s) 193, 269
ScrFI CCNGG 1 cut(s) 280
SetI ASST 7 cut(s) 24, 96, 191, 203, 209, 222, 271
SfcI CTRYAG 3 cut(s) 14, 202, 307
SinI GGWCC 2 cut(s) 193, 269
Sse9I AATT 2 cut(s) 241, 319
SsiI CCGC 1 cut(s) 56
SspMI CTAG 3 cut(s) 75, 156, 210
StyD4I CCNGG 1 cut(s) 278
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 241, 319
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 193, 269
XbaI TCTAGA 1 cut(s) 74
XspI CTAG 3 cut(s) 75, 156, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.