MD11G1145400.v1.1

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015502
Physical Location & Seq
Reverse (-)
13536975 .. 13541793
4819 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1145400.v1.1.491

Sequence Viewer

Length: 1644 bp
ATGCATATCTCGGATCGGAATTGCACCGGCGTGCTCTGCTCGCATCCACTTTCTAGAGATATCCGCATTGAGTCTCTGTCAGTTACCTTCCATGGGCATGATCTGATAGTTGATTCTGAACTGGAGCTTAATTACGGAAGACGCTATGGTTTGCTTGGGTTGAATGGGTGTGGTAAATCCACCCTCCTAACTGCCATAGGGCTCCGAGAGCTTCCAATTCCGGATCACATGGATATCTATCATCTCAGCAGGGAAATTGAAGCTTCAGACATGTCTTCACTTGAGGCTGTCATTAGCTGCGATGAGGAGAGGATAAAGTTGGAGAAAGAAGTTGAAGAACTGGCAGCTCAGGATGATGGCGGTGGAGAGCAGCTTGAACGCATTTATGAGCGCCTTGAAGCATTGGATGCAGCAACTGCAGAGAAGCGTGCTGCTGAAATTCTTTATGGTCTTGGGTTTGACAAGCAGATGCAAGCGAAGAAAACTCGGGATTTTTCTGGTGGGTGGAGAATGAGGATTGCACTTGCACGTGCTCTTTTTATAAACCCAACCATCTTGTTGCTTGATGAGCCCACCAATCATCTTGATCTAGAAGCTTGTGTGTGGTTGGAGGAGATGTTGAAGAATTTTGAGCGAATCCTGGTTGTTATTTCACACTCCCAGGACTTCTTGAATGGTGTCTGCACAAACATCATCCACATGCAGAACAAGAAATTGAAGATCTACACTGGAAACTATGATCAGTATGTTCAGACCCGTTCTGAACTGGAGGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAACAGATTTCTAACATGAAGGAATATATTGCTCGGTTTGGGCATGGGTCAGCAAAACTTGCTCGCCAGGCGCAGAGCAAAGAGAAAACCCTAGCAAAAATGGAGCGCGGTGGGCTTACAGAGAAGGTGGCAAGAGACAGGGTTCTGATCTTCCGTTTTGTCGACGTGGGAAAGCTGCCGCCACCAGTTCTTCAGTTTGTTGAAGTCTCATTTGGTTACACTCCAGATAATCTGATCTACAAGAACATCGACTTTGGTGTTGATCTGGACTCGCGTATAGCTCTGGTTGGGCCAAATGGAGCTGGAAAGAGTACTCTCTTGAAGCTGATGACGGGGGAGTTGTTTCCTTCTGATGGCATGGTCCGGCGGCACAATCACCTTAGAATTGCCCAGTTCCATCAGCACTTGGCTGAGAAGCTTGATATGGAACTGTCTGCCCTAGCGTATATGATCAAAGAGTACCCAGGAAATGAGGAAGAGAAGATGAGGGCTGCAATCGGTAGGTTTGGACTCTCGGGCAAGGCACAAGTAATGCCAATGAAGAATTTATCTGACGGGCAGAGGAGCCGTGTGATCTTTGCTTGGTTGGCGTTTAGGCAGCCCCAGTTACTGTTATTGGATGAGCCAACAAATCATTTGGATATCGAGACAATCGACTCGCTGGCGGAGGCATTGAATGAGTGGGATGGGGGTCTGGTTCTTGTTAGCCACGATTTCAGGCTCATAAACCAGGTAGCTCAGGAGATATGGGTGTGCGAAAATCAAGCCGTGACCAAGTGGAATGGCGATATCATGGACTTCAAGCAGCACCTGAAGATAAAAGCCGGTTTAGCCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

548

Amino Acids

62.17

Weight (kDa)

5.6

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 39 - 193 1.1e-21 ABC transporter
ABC_tran_Xtn PF12848 232 - 305 6.6e-23 ABC transporter
ABC_tran PF00005 349 - 479 3e-22 ABC transporter
AAA_21 PF13304 440 - 506 1.7e-06 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60790
fragaria_vesca FvH4_3g31100
malus_domestica MD00G1033600.v1.1 MD11G1145400.v1.1
prunus_persica Prupe.6G108600_v2.0.a1
pyrus_communis pycom11g11860
rosa_chinensis RchiOBHm_Chr5g0057741
rosa_laevigata RLG00000035173
rosa_multiflora Rmu_sc0043118.1_g000001
rosa_roxburghii Rroxscaffold_1G00022750
rosa_rugosa Rorug05G0309100
rosa_samantha Rh5AG377000 Rh5BG388600 Rh5CG413100 Rh5DG402900
rosa_wichuraiana Rw5G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccI GTMKAC 1 cut(s) 966
AccII CGCG 2 cut(s) 912, 1078
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 6 cut(s) 64, 360, 912, 983, 1171, 1469
AclWI GGATC 2 cut(s) 21, 231
AcsI RAATTY 3 cut(s) 438, 625, 1348
AcuI CTGAAG 3 cut(s) 249, 980, 1637
AcvI CACGTG 1 cut(s) 530
AfaI GTAC 3 cut(s) 791, 1117, 1265
AfiI CCNNNNNNNGG 2 cut(s) 93, 1157
AflIII ACRYGT 1 cut(s) 270
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 5 cut(s) 639, 660, 870, 1267, 1533
AjuI GAANNNNNNNTTGG 2 cut(s) 999, 1031
AleI CACNNNNGTG 1 cut(s) 29
Alw21I GWGCWC 2 cut(s) 36, 535
Alw26I GTCTC 4 cut(s) 78, 933, 1015, 1445
AlwI GGATC 2 cut(s) 21, 231
AlwNI CAGNNNCTG 3 cut(s) 416, 1414, 1615
Ama87I CYCGRG 2 cut(s) 486, 1318
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 1 cut(s) 1094
ApeKI GCWGC 9 cut(s) 297, 344, 370, 410, 431, 979, 1295, 1402, 1609
ApoI RAATTY 3 cut(s) 438, 625, 1348
AspLEI GCGC 3 cut(s) 393, 877, 912
AspS9I GGNCC 2 cut(s) 1094, 1165
AsuHPI GGTGA 1 cut(s) 1172
AvaI CYCGRG 2 cut(s) 486, 1318
AvaII GGWCC 1 cut(s) 1165
BanII GRGCYC 2 cut(s) 204, 573
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 145, 267
Bbv12I GWGCWC 2 cut(s) 36, 535
BbvI GCAGC 9 cut(s) 284, 356, 382, 418, 422, 966, 1282, 1414, 1621
BccI CCATC 5 cut(s) 350, 560, 1151, 1209, 1484
BceAI ACGGC 2 cut(s) 1356, 1556
BciT130I CCWGG 5 cut(s) 641, 662, 872, 1269, 1535
BclI TGATCA 2 cut(s) 739, 1254
BcoDI GTCTC 4 cut(s) 78, 933, 1015, 1445
BfaI CTAG 4 cut(s) 54, 590, 896, 1244
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 394
BglII AGATCT 1 cut(s) 720
BmcAI AGTACT 1 cut(s) 1117
Bme1390I CCNGG 5 cut(s) 641, 662, 872, 1269, 1535
Bme18I GGWCC 1 cut(s) 1165
BmeT110I CYCGRG 2 cut(s) 486, 1318
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 1094, 1165
BmiI GGNNCC 2 cut(s) 203, 1370
BmrFI CCNGG 5 cut(s) 641, 662, 872, 1269, 1535
BmrI ACTGGG 2 cut(s) 1189, 1402
BmsI GCATC 3 cut(s) 52, 397, 459
BmuI ACTGGG 2 cut(s) 1189, 1402
BpiI GAAGAC 2 cut(s) 145, 267
BpmI CTGGAG 3 cut(s) 143, 788, 1011
Bpu10I CCTNAGC 2 cut(s) 348, 1542
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 91, 660, 1267
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 1157
Bse118I RCCGGY 2 cut(s) 26, 1628
Bse1I ACTGG 7 cut(s) 126, 345, 733, 771, 989, 1195, 1408
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 5 cut(s) 641, 662, 872, 1269, 1535
BseDI CCNNGG 3 cut(s) 91, 660, 1267
BseGI GGATG 6 cut(s) 43, 358, 412, 693, 1429, 1495
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 93, 1157
BseMII CTCAG 4 cut(s) 259, 362, 1206, 1556
BseNI ACTGG 7 cut(s) 126, 345, 733, 771, 989, 1195, 1408
BseRI GAGGAG 4 cut(s) 320, 626, 785, 1381
BseXI GCAGC 9 cut(s) 284, 356, 382, 418, 422, 966, 1282, 1414, 1621
BsgI GTGCAG 1 cut(s) 667
Bsh1236I CGCG 2 cut(s) 912, 1078
BshFI GGCC 1 cut(s) 1096
BsiHKAI GWGCWC 2 cut(s) 36, 535
BsiHKCI CYCGRG 2 cut(s) 486, 1318
BsiSI CCGG 4 cut(s) 27, 221, 1168, 1629
BslI CCNNNNNNNGG 2 cut(s) 93, 1157
BsmAI GTCTC 4 cut(s) 78, 933, 1015, 1445
BsnI GGCC 1 cut(s) 1096
BsoBI CYCGRG 2 cut(s) 486, 1318
Bsp1286I GDGCHC 4 cut(s) 36, 204, 535, 573
Bsp13I TCCGGA 1 cut(s) 220
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 6 cut(s) 64, 360, 912, 983, 1171, 1469
BspANI GGCC 1 cut(s) 1096
BspCNI CTCAG 4 cut(s) 258, 361, 1207, 1555
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 2 cut(s) 912, 1078
BspLI GGNNCC 2 cut(s) 203, 1370
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 21, 231
BsrFI RCCGGY 2 cut(s) 26, 1628
BsrI ACTGG 7 cut(s) 126, 345, 733, 771, 989, 1195, 1408
BssAI RCCGGY 2 cut(s) 26, 1628
BssECI CCNNGG 3 cut(s) 91, 660, 1267
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 5 cut(s) 641, 662, 872, 1269, 1535
Bst4CI ACNGT 2 cut(s) 1236, 1416
Bst6I CTCTTC 1 cut(s) 1275
BstAPI GCANNNNNTGC 3 cut(s) 407, 416, 863
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 6 cut(s) 32, 41, 429, 474, 868, 1467
BstDEI CTNAG 5 cut(s) 245, 348, 1184, 1215, 1542
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 6 cut(s) 43, 358, 412, 693, 1429, 1495
BstFNI CGCG 2 cut(s) 912, 1078
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 3 cut(s) 393, 877, 912
BstMAI GTCTC 4 cut(s) 78, 933, 1015, 1445
BstNI CCWGG 5 cut(s) 641, 662, 872, 1269, 1535
BstNSI RCATGY 2 cut(s) 274, 703
BstSCI CCNGG 5 cut(s) 639, 660, 870, 1267, 1533
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 2 cut(s) 912, 1078
BstV1I GCAGC 9 cut(s) 284, 356, 382, 418, 422, 966, 1282, 1414, 1621
BstV2I GAAGAC 2 cut(s) 145, 267
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
BsuRI GGCC 1 cut(s) 1096
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 6 cut(s) 43, 358, 412, 693, 1429, 1495
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 6 cut(s) 32, 41, 429, 474, 868, 1467
CaiI CAGNNNCTG 3 cut(s) 416, 1414, 1615
CfoI GCGC 3 cut(s) 393, 877, 912
Cfr10I RCCGGY 2 cut(s) 26, 1628
Cfr13I GGNCC 2 cut(s) 1094, 1165
CseI GACGC 1 cut(s) 150
CsiI ACCWGGT 1 cut(s) 1533
Csp6I GTAC 3 cut(s) 790, 1116, 1264
CviAII CATG 9 cut(s) 92, 98, 229, 271, 700, 820, 848, 1162, 1597
CviQI GTAC 3 cut(s) 790, 1116, 1264
DdeI CTNAG 5 cut(s) 245, 348, 1184, 1215, 1542
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
EciI GGCGGA 1 cut(s) 1484
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 204, 573
Eco32I GATATC 4 cut(s) 61, 235, 1447, 1594
Eco47I GGWCC 1 cut(s) 1165
Eco57I CTGAAG 3 cut(s) 249, 980, 1637
Eco72I CACGTG 1 cut(s) 530
Eco88I CYCGRG 2 cut(s) 486, 1318
EcoRII CCWGG 5 cut(s) 639, 660, 870, 1267, 1533
EcoRV GATATC 4 cut(s) 61, 235, 1447, 1594
EcoT14I CCWWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 204, 573
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 9 cut(s) 95, 101, 232, 274, 703, 823, 851, 1165, 1600
FatI CATG 9 cut(s) 91, 97, 228, 270, 699, 819, 847, 1161, 1596
FbaI TGATCA 2 cut(s) 739, 1254
FblI GTMKAC 1 cut(s) 966
FokI GGATG 6 cut(s) 30, 365, 419, 680, 1436, 1502
FriOI GRGCYC 2 cut(s) 204, 573
FspBI CTAG 4 cut(s) 54, 590, 896, 1244
GlaI GCGC 3 cut(s) 392, 876, 911
GsuI CTGGAG 3 cut(s) 143, 788, 1011
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 1 cut(s) 1096
HapII CCGG 4 cut(s) 27, 221, 1168, 1629
HgaI GACGC 1 cut(s) 150
HhaI GCGC 3 cut(s) 393, 877, 912
Hin1II CATG 9 cut(s) 95, 101, 232, 274, 703, 823, 851, 1165, 1600
Hin6I GCGC 3 cut(s) 391, 875, 910
HinP1I GCGC 3 cut(s) 391, 875, 910
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HindIII AAGCTT 3 cut(s) 261, 594, 1220
HinfI GANTC 6 cut(s) 71, 113, 636, 1073, 1314, 1460
HpaII CCGG 4 cut(s) 27, 221, 1168, 1629
HphI GGTGA 1 cut(s) 1172
Hpy166II GTNNAC 1 cut(s) 967
Hpy8I GTNNAC 1 cut(s) 967
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 4 cut(s) 97, 817, 922, 1161
HpyCH4III ACNGT 2 cut(s) 1236, 1416
HpyCH4IV ACGT 2 cut(s) 529, 969
HpyF3I CTNAG 5 cut(s) 245, 348, 1184, 1215, 1542
HpySE526I ACGT 2 cut(s) 529, 969
Hsp92II CATG 9 cut(s) 95, 101, 232, 274, 703, 823, 851, 1165, 1600
HspAI GCGC 3 cut(s) 391, 875, 910
Kpn2I TCCGGA 1 cut(s) 220
Ksp22I TGATCA 2 cut(s) 739, 1254
LmnI GCTCC 6 cut(s) 124, 207, 799, 907, 1103, 1368
Lsp1109I GCAGC 9 cut(s) 284, 356, 382, 418, 422, 966, 1282, 1414, 1621
LweI GCATC 3 cut(s) 52, 397, 459
MabI ACCWGGT 1 cut(s) 1533
MaeI CTAG 4 cut(s) 54, 590, 896, 1244
MaeII ACGT 2 cut(s) 529, 969
MaeIII GTNAC 4 cut(s) 82, 1019, 1410, 1573
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 4 cut(s) 36, 204, 535, 573
MluCI AATT 9 cut(s) 19, 130, 216, 255, 438, 625, 713, 1188, 1348
MlyI GAGTC 4 cut(s) 80, 1067, 1308, 1454
MmeI TCCRAC 2 cut(s) 300, 588
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 220
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 3 cut(s) 29, 96, 698
MspI CCGG 4 cut(s) 27, 221, 1168, 1629
MspR9I CCNGG 5 cut(s) 641, 662, 872, 1269, 1535
MvaI CCWGG 5 cut(s) 641, 662, 872, 1269, 1535
MvnI CGCG 2 cut(s) 912, 1078
NcoI CCATGG 1 cut(s) 91
NlaIII CATG 9 cut(s) 95, 101, 232, 274, 703, 823, 851, 1165, 1600
NlaIV GGNNCC 2 cut(s) 203, 1370
NmuCI GTSAC 1 cut(s) 1573
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 274, 703
OliI CACNNNNGTG 1 cut(s) 29
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 1455
PfeI GAWTC 2 cut(s) 113, 636
PleI GAGTC 4 cut(s) 79, 1067, 1308, 1454
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
PpsI GAGTC 4 cut(s) 79, 1067, 1308, 1454
Ppu21I YACGTR 1 cut(s) 530
PscI ACATGT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 5 cut(s) 639, 660, 870, 1267, 1533
PspCI CACGTG 1 cut(s) 530
PspGI CCWGG 5 cut(s) 639, 660, 870, 1267, 1533
PspN4I GGNNCC 2 cut(s) 203, 1370
PspPI GGNCC 2 cut(s) 1094, 1165
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 3 cut(s) 416, 1414, 1615
PsuI RGATCY 1 cut(s) 720
RsaI GTAC 3 cut(s) 791, 1117, 1265
RsaNI GTAC 3 cut(s) 790, 1116, 1264
RseI CAYNNNNRTG 3 cut(s) 29, 96, 698
SalI GTCGAC 1 cut(s) 965
SaqAI TTAA 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 1094, 1165
ScaI AGTACT 1 cut(s) 1117
SchI GAGTC 4 cut(s) 80, 1067, 1308, 1454
ScrFI CCNGG 5 cut(s) 641, 662, 872, 1269, 1535
SduI GDGCHC 4 cut(s) 36, 204, 535, 573
SexAI ACCWGGT 1 cut(s) 1533
SfaNI GCATC 3 cut(s) 52, 397, 459
SfcI CTRYAG 1 cut(s) 417
SgrAI CRCCGGYG 1 cut(s) 26
SinI GGWCC 1 cut(s) 1165
SmiMI CAYNNNNRTG 3 cut(s) 29, 96, 698
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 9 cut(s) 19, 130, 216, 255, 438, 625, 713, 1188, 1348
SsiI CCGC 6 cut(s) 64, 360, 912, 983, 1171, 1469
SspMI CTAG 4 cut(s) 54, 590, 896, 1244
StyD4I CCNGG 5 cut(s) 639, 660, 870, 1267, 1533
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 1236, 1416
TaiI ACGT 2 cut(s) 532, 972
TaqI TCGA 4 cut(s) 966, 1053, 1449, 1458
TasI AATT 9 cut(s) 19, 130, 216, 255, 438, 625, 713, 1188, 1348
TatI WGTACW 2 cut(s) 789, 1115
TauI GCSGC 2 cut(s) 985, 1174
TfiI GAWTC 2 cut(s) 113, 636
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 1573
TseI GCWGC 9 cut(s) 297, 344, 370, 410, 431, 979, 1295, 1402, 1609
Tsp45I GTSAC 1 cut(s) 1573
TspDTI ATGAA 3 cut(s) 797, 836, 1358
TspGWI ACGGA 2 cut(s) 150, 947
TspRI CASTG 1 cut(s) 733
VpaK11BI GGWCC 1 cut(s) 1165
XapI RAATTY 3 cut(s) 438, 625, 1348
XbaI TCTAGA 2 cut(s) 53, 589
XceI RCATGY 2 cut(s) 274, 703
XmiI GTMKAC 1 cut(s) 966
XspI CTAG 4 cut(s) 54, 590, 896, 1244
ZrmI AGTACT 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.