Rorug05G0309100

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
36183151 .. 36189586
6436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0309100.1

Sequence Viewer

Length: 1611 bp
ATGGGAACCCCAAAGAGGAAGAAGAAGCAGACCCCAGAGACCCAATTCCACCTTTCCCTCACTTTCTGCTCAAAGAACAAGGACTTAAGCAGCGCAATCTCGCTGTATGAATCCGCTGTTTCGCAGAATACGCGGCTCAACCAGCACCATTTTAACACCCTACTCTACCTTTGCTCTAACTCTGTCACCGACCCGTCCCTGAAGCAATTGGCCTTGGAATATGGCTTCCGCGTGTTTGATCACATGTCGTTGATCGAAGTCCTCCCCAACGAGGCCACGATCACCGCTGTTGCTCGGCTCGCTGCGGCGAAAGGTGATGGTGATTATGCTTTTGAGCTGGTGAAGGGTATGGAGAAGTATAATGTATTGCCGAGGTTGCGCACTTGCGATCCGGCATTGTTTTGCTTTTGCGAGAAACTGGAGGCTGATAAGGCGTATGAGGTGGAAGAGTATATGAATAAGGTGGGAGTGAGTGTAGAAGAGCCTGAGATTGCAGCCTTATTAAAGGTGAGTGCAGAGACAGGAGGAGGGGAGAGGGTTTATGATTACTTGCACAAGTTGAGGAATGCTGTGAGGTGTGTTAATGCATTGACGGCCAAGATCATTGAGGATTGGTATCGTGATGGAAGGGCTAGTGAAGTGGGTGAGGTGAATTGGGACTCGGGTAGGGTCAAAGAGGCAGTTTTGAGGAATGGAGGAGGGTGGCATGGGCAGGGGTGGGTTGGGAAGGGGGATTGGGCTGTGCAGAGAGCCAATGTGGATTCTGACAGCAGGTGTTGCTCCTGTGGTGAGCATTTGGTTTGTGTTGACATTGACTGTGCAGAGACAGATAGGTTTGCGCAGTCTGTTGCTGCTTTGGCGATGGAAAGGGAGGTTAAGTCGAATTTCAGTGAGTTTCAGGATTGGCTGGACAAACATGCTGATTATGAAGCTATTGTGGATGGAGCTAATATTGGGCTCTACCAGCAGAATTTTGCAGAAGGTGGATTCAGTCTTCCTCAGCTTGATGCTGTTGTGAAAGAATTGTACAATAGAAGTGGAGAGAAATGGCCACTTGTTGTCTTGCATAATAGACGTTTTCGGTCACTTGTGGAAAACCCTTCCCACAGAAAAGTGGTTGAGGAGTGGATGGATAAAGGTTTTCTTTATACCACACCAAGTGGCTCAAATGATGACTGGTATTGGCTTTATGCTGCTGTGAAACTCAAGTGCTTGCTCATTACAAATGATGAAATGCGAGATCATATATTTGAACTTCTAGGAAGCAGCTTCTTTCTTAAGTGGAAAGAGAGGCATCAAGTACGATATACTTTTGTTAAAGGCAATCTGAAACTTCAGACCCAACCCCCATATTCTTCAGTGATCCAGGAATCAGAAAGCGGATCATGGCATGTACCTGTAGCAGATGACAGCTGTGAGGAGCCAGCGAGAACCTGGCTCTGCATTACCCGGTCAAGTGCCTCTAAAGCTTCTAGTGGAGCTTTGCTATCTCAAAATGCGTTTCTGAACTCTTGCACATCTGAGTTAGTTACCAGTCACAACGATAAAACCACAACTAAGACGGGTAAAAGAAAAGAGAGGTCCCCATCTCCTTCCCACCTAATGACTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

60.41

Weight (kDa)

6.06

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 5 - 212 3e-82 Pentacotripeptide-repeat region of PRORP
PRORP PF16953 254 - 481 1.8e-58 Protein-only RNase P
RNase_Zc3h12a PF11977 311 - 444 1.5e-07 Zc3h12a-like Ribonuclease NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 762
Acc16I TGCGCA 2 cut(s) 380, 840
Acc36I ACCTGC 1 cut(s) 762
AccII CGCG 2 cut(s) 133, 231
AciI CCGC 6 cut(s) 114, 133, 229, 285, 305, 1380
AclWI GGATC 3 cut(s) 383, 1357, 1390
AcoI YGGCCR 2 cut(s) 594, 1049
AcsI RAATTY 2 cut(s) 883, 970
AcuI CTGAAG 3 cut(s) 221, 1319, 1341
AdeI CACNNNGTG 1 cut(s) 1160
AfaI GTAC 3 cut(s) 1028, 1302, 1395
AfiI CCNNNNNNNGG 2 cut(s) 15, 271
AflII CTTAAG 2 cut(s) 85, 1277
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 1253
AjnI CCWGG 2 cut(s) 1365, 1433
AluBI AGCT 8 cut(s) 337, 932, 947, 1003, 1269, 1413, 1469, 1481
AluI AGCT 8 cut(s) 337, 932, 947, 1003, 1269, 1413, 1469, 1481
Alw26I GTCTC 3 cut(s) 32, 512, 818
AlwI GGATC 3 cut(s) 383, 1357, 1390
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 4 cut(s) 210, 273, 594, 1049
ApeKI GCWGC 6 cut(s) 90, 302, 494, 851, 1193, 1266
ApoI RAATTY 2 cut(s) 883, 970
AspLEI GCGC 3 cut(s) 95, 381, 841
AspS9I GGNCC 1 cut(s) 1581
AsuC2I CCSGG 1 cut(s) 1450
AsuHPI GGTGA 9 cut(s) 178, 274, 326, 332, 352, 520, 656, 661, 800
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 1 cut(s) 1581
BalI TGGCCA 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 986
BbvCI CCTCAGC 1 cut(s) 999
BbvI GCAGC 6 cut(s) 102, 289, 506, 838, 1180, 1278
BccI CCATC 6 cut(s) 311, 617, 856, 935, 1123, 1594
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 2 cut(s) 1367, 1435
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 1450
BcoDI GTCTC 3 cut(s) 32, 512, 818
BfaI CTAG 3 cut(s) 633, 1259, 1473
BfmI CTRYAG 1 cut(s) 1398
BfrI CTTAAG 2 cut(s) 85, 1277
BfuAI ACCTGC 1 cut(s) 762
BisI GCNGC 8 cut(s) 91, 134, 303, 306, 495, 852, 1194, 1267
BlsI GCNGC 8 cut(s) 92, 135, 304, 307, 496, 853, 1195, 1268
Bme1390I CCNGG 3 cut(s) 1367, 1435, 1450
Bme18I GGWCC 1 cut(s) 1581
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 1 cut(s) 1581
BmiI GGNNCC 3 cut(s) 7, 1422, 1583
BmrFI CCNGG 3 cut(s) 1367, 1435, 1450
BmsI GCATC 2 cut(s) 997, 1303
BpiI GAAGAC 1 cut(s) 986
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 1190
BpuMI CCSGG 1 cut(s) 1450
BsaBI GATNNNNATC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 213, 371
BsaXI ACNNNNNCTCC 4 cut(s) 459, 489, 863, 893
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 271
Bse1I ACTGG 3 cut(s) 423, 1181, 1533
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 2 cut(s) 1367, 1435
BseDI CCNNGG 2 cut(s) 213, 371
BseGI GGATG 2 cut(s) 946, 1134
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 2 cut(s) 15, 271
BseMII CTCAG 3 cut(s) 477, 1013, 1512
BseNI ACTGG 3 cut(s) 423, 1181, 1533
BseRI GAGGAG 4 cut(s) 540, 711, 1136, 1433
BseXI GCAGC 6 cut(s) 102, 289, 506, 838, 1180, 1278
BsgI GTGCAG 3 cut(s) 534, 764, 840
Bsh1236I CGCG 2 cut(s) 133, 231
BshFI GGCC 4 cut(s) 212, 275, 596, 1051
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 2 cut(s) 392, 1450
BslFI GGGAC 3 cut(s) 181, 671, 1567
BslI CCNNNNNNNGG 2 cut(s) 15, 271
BsmAI GTCTC 3 cut(s) 32, 512, 818
BsmFI GGGAC 3 cut(s) 181, 671, 1567
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 4 cut(s) 212, 275, 596, 1051
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 960
Bsp1407I TGTACA 1 cut(s) 1026
Bsp143I GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
BspACI CCGC 6 cut(s) 114, 133, 229, 285, 305, 1380
BspANI GGCC 4 cut(s) 212, 275, 596, 1051
BspCNI CTCAG 3 cut(s) 478, 1012, 1513
BspFNI CGCG 2 cut(s) 133, 231
BspLI GGNNCC 3 cut(s) 7, 1422, 1583
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 3 cut(s) 383, 1357, 1390
BspQI GCTCTTC 1 cut(s) 474
BspTI CTTAAG 2 cut(s) 85, 1277
BspTNI GGTCTC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 3 cut(s) 423, 1181, 1533
BssECI CCNNGG 2 cut(s) 213, 371
BssMI GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 1367, 1435
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 2 cut(s) 441, 474
BstAFI CTTAAG 2 cut(s) 85, 1277
BstAPI GCANNNNNTGC 1 cut(s) 777
BstAUI TGTACA 1 cut(s) 1026
BstC8I GCNNGC 3 cut(s) 300, 1214, 1425
BstDEI CTNAG 4 cut(s) 486, 999, 1521, 1557
BstF5I GGATG 2 cut(s) 946, 1134
BstFNI CGCG 2 cut(s) 133, 231
BstHHI GCGC 3 cut(s) 95, 381, 841
BstKTI GATC 8 cut(s) 241, 255, 282, 391, 603, 1243, 1365, 1385
BstMAI GTCTC 3 cut(s) 32, 512, 818
BstMBI GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
BstNI CCWGG 2 cut(s) 1367, 1435
BstNSI RCATGY 3 cut(s) 247, 920, 1394
BstSCI CCNGG 3 cut(s) 1365, 1433, 1448
BstSFI CTRYAG 1 cut(s) 1398
BstUI CGCG 2 cut(s) 133, 231
BstV1I GCAGC 6 cut(s) 102, 289, 506, 838, 1180, 1278
BstV2I GAAGAC 1 cut(s) 986
BsuRI GGCC 4 cut(s) 212, 275, 596, 1051
BtgZI GCGATG 1 cut(s) 875
BtsCI GGATG 2 cut(s) 946, 1134
BtsIMutI CAGTG 2 cut(s) 895, 1365
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 3 cut(s) 300, 1214, 1425
CfoI GCGC 3 cut(s) 95, 381, 841
Cfr13I GGNCC 1 cut(s) 1581
Csp6I GTAC 3 cut(s) 1027, 1301, 1394
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviAII CATG 5 cut(s) 244, 707, 917, 1386, 1391
CviQI GTAC 3 cut(s) 1027, 1301, 1394
DdeI CTNAG 4 cut(s) 486, 999, 1521, 1557
DpnI GATC 8 cut(s) 240, 254, 281, 390, 602, 1242, 1364, 1384
DpnII GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
DraIII CACNNNGTG 1 cut(s) 1160
EaeI YGGCCR 2 cut(s) 594, 1049
Eam1104I CTCTTC 2 cut(s) 441, 474
EarI CTCTTC 2 cut(s) 441, 474
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 1581
Eco57I CTGAAG 3 cut(s) 221, 1319, 1341
Eco88I CYCGRG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 1581
EcoRII CCWGG 2 cut(s) 1365, 1433
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 247, 710, 920, 1389, 1394
FalI AAGNNNNNCTT 2 cut(s) 1128, 1160
FaqI GGGAC 3 cut(s) 181, 671, 1567
FatI CATG 5 cut(s) 243, 706, 916, 1385, 1390
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 8 cut(s) 91, 134, 303, 306, 495, 852, 1194, 1267
FokI GGATG 2 cut(s) 953, 1141
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 8 cut(s) 91, 134, 303, 306, 495, 852, 1194, 1267
FspBI CTAG 3 cut(s) 633, 1259, 1473
FspI TGCGCA 2 cut(s) 380, 840
GlaI GCGC 3 cut(s) 94, 380, 840
GluI GCNGC 8 cut(s) 91, 134, 303, 306, 495, 852, 1194, 1267
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 4 cut(s) 212, 275, 596, 1051
HapII CCGG 2 cut(s) 392, 1450
HhaI GCGC 3 cut(s) 95, 381, 841
Hin1II CATG 5 cut(s) 247, 710, 920, 1389, 1394
Hin6I GCGC 3 cut(s) 93, 379, 839
HinP1I GCGC 3 cut(s) 93, 379, 839
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 1467
HinfI GANTC 5 cut(s) 110, 659, 761, 987, 1370
HpaII CCGG 2 cut(s) 392, 1450
HphI GGTGA 9 cut(s) 178, 274, 326, 332, 352, 520, 656, 661, 800
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 6 cut(s) 766, 1329, 1338, 1375, 1506, 1522
Hpy188III TCNNGA 2 cut(s) 620, 899
Hpy8I GTNNAC 1 cut(s) 808
HpyAV CCTTC 6 cut(s) 337, 621, 721, 974, 1110, 1602
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4IV ACGT 1 cut(s) 1075
HpyF3I CTNAG 4 cut(s) 486, 999, 1521, 1557
HpySE526I ACGT 1 cut(s) 1075
Hsp92II CATG 5 cut(s) 247, 710, 920, 1389, 1394
HspAI GCGC 3 cut(s) 93, 379, 839
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 4 cut(s) 785, 944, 1420, 1478
Lsp1109I GCAGC 6 cut(s) 102, 289, 506, 838, 1180, 1278
LweI GCATC 2 cut(s) 997, 1303
MaeI CTAG 3 cut(s) 633, 1259, 1473
MaeII ACGT 1 cut(s) 1075
MaeIII GTNAC 4 cut(s) 184, 1083, 1528, 1535
MalI GATC 8 cut(s) 240, 254, 281, 390, 602, 1242, 1364, 1384
MboI GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
MboII GAAGA 6 cut(s) 31, 34, 458, 491, 986, 1347
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 960
MlsI TGGCCA 1 cut(s) 1051
MluCI AATT 6 cut(s) 44, 206, 652, 883, 970, 1022
MluNI TGGCCA 1 cut(s) 1051
MlyI GAGTC 1 cut(s) 653
Mox20I TGGCCA 1 cut(s) 1051
Mph1103I ATGCAT 1 cut(s) 589
MscI TGGCCA 1 cut(s) 1051
MseI TTAA 8 cut(s) 86, 153, 503, 582, 876, 1278, 1317, 1609
Msp20I TGGCCA 1 cut(s) 1051
MspA1I CMGCKG 3 cut(s) 116, 287, 1413
MspCI CTTAAG 2 cut(s) 85, 1277
MspI CCGG 2 cut(s) 392, 1450
MspR9I CCNGG 3 cut(s) 1367, 1435, 1450
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 2 cut(s) 1367, 1435
MvnI CGCG 2 cut(s) 133, 231
NciI CCSGG 1 cut(s) 1450
NdeII GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
NlaIII CATG 5 cut(s) 247, 710, 920, 1389, 1394
NlaIV GGNNCC 3 cut(s) 7, 1422, 1583
NmeAIII GCCGAG 2 cut(s) 274, 396
NmuCI GTSAC 3 cut(s) 184, 1083, 1535
NsbI TGCGCA 2 cut(s) 380, 840
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 3 cut(s) 247, 920, 1394
PaqCI CACCTGC 1 cut(s) 762
PciI ACATGT 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 474
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 4 cut(s) 110, 761, 987, 1370
PfoI TCCNGGA 1 cut(s) 1365
PkrI GCNGC 8 cut(s) 92, 135, 304, 307, 496, 853, 1195, 1268
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
PpuMI RGGWCCY 1 cut(s) 1581
PscI ACATGT 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 1581
Psp6I CCWGG 2 cut(s) 1365, 1433
PspGI CCWGG 2 cut(s) 1365, 1433
PspN4I GGNNCC 3 cut(s) 7, 1422, 1583
PspPI GGNCC 1 cut(s) 1581
PspPPI RGGWCCY 1 cut(s) 1581
PvuII CAGCTG 1 cut(s) 1413
RsaI GTAC 3 cut(s) 1028, 1302, 1395
RsaNI GTAC 3 cut(s) 1027, 1301, 1394
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 8 cut(s) 86, 153, 503, 582, 876, 1278, 1317, 1609
SatI GCNGC 8 cut(s) 91, 134, 303, 306, 495, 852, 1194, 1267
Sau3AI GATC 8 cut(s) 238, 252, 279, 388, 600, 1240, 1362, 1382
Sau96I GGNCC 1 cut(s) 1581
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 3 cut(s) 1367, 1435, 1450
SduI GDGCHC 1 cut(s) 960
SfaNI GCATC 2 cut(s) 997, 1303
SfcI CTRYAG 1 cut(s) 1398
SinI GGWCC 1 cut(s) 1581
SmlI CTYRAG 3 cut(s) 85, 1205, 1277
SmoI CTYRAG 3 cut(s) 85, 1205, 1277
Sse9I AATT 6 cut(s) 44, 206, 652, 883, 970, 1022
SsiI CCGC 6 cut(s) 114, 133, 229, 285, 305, 1380
SspI AATATT 1 cut(s) 952
SspMI CTAG 3 cut(s) 633, 1259, 1473
StyD4I CCNGG 3 cut(s) 1365, 1433, 1448
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 818
TaiI ACGT 1 cut(s) 1078
TaqI TCGA 2 cut(s) 255, 881
TaqII GACCGA 1 cut(s) 1071
TasI AATT 6 cut(s) 44, 206, 652, 883, 970, 1022
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 2 cut(s) 136, 308
TfiI GAWTC 4 cut(s) 110, 761, 987, 1370
Tru1I TTAA 8 cut(s) 86, 153, 503, 582, 876, 1278, 1317, 1609
Tru9I TTAA 8 cut(s) 86, 153, 503, 582, 876, 1278, 1317, 1609
TscAI CASTG 2 cut(s) 895, 1365
TseFI GTSAC 3 cut(s) 184, 1083, 1535
TseI GCWGC 6 cut(s) 90, 302, 494, 851, 1193, 1266
Tsp45I GTSAC 3 cut(s) 184, 1083, 1535
TspDTI ATGAA 4 cut(s) 123, 470, 942, 1245
TspRI CASTG 2 cut(s) 895, 1365
Vha464I CTTAAG 2 cut(s) 85, 1277
VpaK11BI GGWCC 1 cut(s) 1581
XapI RAATTY 2 cut(s) 883, 970
XceI RCATGY 3 cut(s) 247, 920, 1394
XcmI CCANNNNNNNNNTGG 1 cut(s) 1431
XspI CTAG 3 cut(s) 633, 1259, 1473
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.