ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 506, 809 |
| AccI | GTMKAC | 1 cut(s) | 434 |
| AciI | CCGC | 6 cut(s) | 173, 398, 488, 557, 701, 791 |
| AclI | AACGTT | 1 cut(s) | 1422 |
| AclWI | GGATC | 2 cut(s) | 417, 1355 |
| AcsI | RAATTY | 3 cut(s) | 357, 1123, 1249 |
| AcuI | CTGAAG | 1 cut(s) | 1386 |
| AfeI | AGCGCT | 1 cut(s) | 546 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 331, 820, 905, 1110, 1236 |
| AgsI | TTSAA | 6 cut(s) | 110, 352, 941, 1020, 1345, 1475 |
| AjiI | CACGTC | 1 cut(s) | 48 |
| AjnI | CCWGG | 4 cut(s) | 570, 714, 965, 1363 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 449, 481, 608, 640, 752, 784 |
| AloI | GAACNNNNNNTCC | 8 cut(s) | 401, 433, 560, 592, 704, 736, 1345, 1377 |
| AluBI | AGCT | 4 cut(s) | 269, 504, 807, 1033 |
| AluI | AGCT | 4 cut(s) | 269, 504, 807, 1033 |
| Alw26I | GTCTC | 7 cut(s) | 117, 339, 446, 605, 749, 904, 931 |
| AlwI | GGATC | 2 cut(s) | 417, 1355 |
| Ama87I | CYCGRG | 2 cut(s) | 661, 819 |
| Aor51HI | AGCGCT | 1 cut(s) | 546 |
| ApeKI | GCWGC | 2 cut(s) | 269, 892 |
| ApoI | RAATTY | 3 cut(s) | 357, 1123, 1249 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1124, 1250, 1340 |
| AspA2I | CCTAGG | 1 cut(s) | 157 |
| AspLEI | GCGC | 3 cut(s) | 388, 547, 691 |
| AspS9I | GGNCC | 3 cut(s) | 568, 712, 850 |
| AsuC2I | CCSGG | 1 cut(s) | 539 |
| AsuHPI | GGTGA | 2 cut(s) | 230, 998 |
| AvaI | CYCGRG | 2 cut(s) | 661, 819 |
| AvaII | GGWCC | 3 cut(s) | 568, 712, 850 |
| AvrII | CCTAGG | 1 cut(s) | 157 |
| BauI | CACGAG | 1 cut(s) | 1446 |
| BbvI | GCAGC | 2 cut(s) | 256, 904 |
| BccI | CCATC | 8 cut(s) | 215, 228, 659, 679, 837, 1018, 1169, 1295 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 132, 166 |
| BciT130I | CCWGG | 4 cut(s) | 572, 716, 967, 1365 |
| BciVI | GTATCC | 1 cut(s) | 1491 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcnI | CCSGG | 1 cut(s) | 539 |
| BcoDI | GTCTC | 7 cut(s) | 117, 339, 446, 605, 749, 904, 931 |
| BfaI | CTAG | 5 cut(s) | 158, 389, 548, 692, 959 |
| BfoI | RGCGCY | 1 cut(s) | 548 |
| BfuI | GTATCC | 1 cut(s) | 1491 |
| BisI | GCNGC | 4 cut(s) | 270, 489, 792, 893 |
| BlnI | CCTAGG | 1 cut(s) | 157 |
| BlsI | GCNGC | 4 cut(s) | 271, 490, 793, 894 |
| Bme1390I | CCNGG | 5 cut(s) | 539, 572, 716, 967, 1365 |
| Bme18I | GGWCC | 3 cut(s) | 568, 712, 850 |
| BmeT110I | CYCGRG | 2 cut(s) | 661, 819 |
| BmgBI | CACGTC | 1 cut(s) | 48 |
| BmgT120I | GGNCC | 3 cut(s) | 568, 712, 850 |
| BmiI | GGNNCC | 4 cut(s) | 419, 521, 578, 722 |
| BmrFI | CCNGG | 5 cut(s) | 539, 572, 716, 967, 1365 |
| BmsI | GCATC | 5 cut(s) | 140, 373, 377, 676, 952 |
| BpuMI | CCSGG | 1 cut(s) | 539 |
| BsaBI | GATNNNNATC | 1 cut(s) | 63 |
| BsaI | GGTCTC | 2 cut(s) | 904, 931 |
| BsaJI | CCNNGG | 8 cut(s) | 157, 329, 421, 571, 580, 715, 724, 1364 |
| BsaWI | WCCGGW | 1 cut(s) | 898 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 331, 820, 905, 1110, 1236 |
| Bse3DI | GCAATG | 1 cut(s) | 893 |
| Bse8I | GATNNNNATC | 1 cut(s) | 63 |
| BseBI | CCWGG | 4 cut(s) | 572, 716, 967, 1365 |
| BseDI | CCNNGG | 8 cut(s) | 157, 329, 421, 571, 580, 715, 724, 1364 |
| BseGI | GGATG | 8 cut(s) | 388, 557, 647, 667, 691, 701, 825, 1029 |
| BseJI | GATNNNNATC | 1 cut(s) | 63 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 331, 820, 905, 1110, 1236 |
| BseMI | GCAATG | 1 cut(s) | 893 |
| BseMII | CTCAG | 4 cut(s) | 313, 441, 600, 744 |
| BseRI | GAGGAG | 1 cut(s) | 828 |
| BseXI | GCAGC | 2 cut(s) | 256, 904 |
| BsiHKCI | CYCGRG | 2 cut(s) | 661, 819 |
| BsiSI | CCGG | 2 cut(s) | 538, 899 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 331, 820, 905, 1110, 1236 |
| BsmAI | GTCTC | 7 cut(s) | 117, 339, 446, 605, 749, 904, 931 |
| BsmBI | CGTCTC | 4 cut(s) | 117, 446, 605, 749 |
| Bso31I | GGTCTC | 2 cut(s) | 904, 931 |
| BsoBI | CYCGRG | 2 cut(s) | 661, 819 |
| Bsp143I | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| Bsp19I | CCATGG | 3 cut(s) | 421, 580, 724 |
| BspACI | CCGC | 6 cut(s) | 173, 398, 488, 557, 701, 791 |
| BspCNI | CTCAG | 4 cut(s) | 312, 442, 601, 745 |
| BspLI | GGNNCC | 4 cut(s) | 419, 521, 578, 722 |
| BspPI | GGATC | 2 cut(s) | 417, 1355 |
| BspTNI | GGTCTC | 2 cut(s) | 904, 931 |
| BsrDI | GCAATG | 1 cut(s) | 893 |
| BssECI | CCNNGG | 8 cut(s) | 157, 329, 421, 571, 580, 715, 724, 1364 |
| BssMI | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| BssNAI | GTATAC | 1 cut(s) | 435 |
| BssSI | CACGAG | 1 cut(s) | 1446 |
| BssT1I | CCWWGG | 4 cut(s) | 157, 421, 580, 724 |
| Bst1107I | GTATAC | 1 cut(s) | 435 |
| Bst2BI | CACGAG | 1 cut(s) | 1446 |
| Bst2UI | CCWGG | 4 cut(s) | 572, 716, 967, 1365 |
| Bst4CI | ACNGT | 2 cut(s) | 330, 1357 |
| Bst6I | CTCTTC | 2 cut(s) | 1407, 1446 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 962 |
| BstC8I | GCNNGC | 1 cut(s) | 202 |
| BstDEI | CTNAG | 5 cut(s) | 299, 450, 609, 753, 1037 |
| BstDSI | CCRYGG | 4 cut(s) | 329, 421, 580, 724 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1108, 1234 |
| BstF5I | GGATG | 8 cut(s) | 388, 557, 647, 667, 691, 701, 825, 1029 |
| BstH2I | RGCGCY | 1 cut(s) | 548 |
| BstHHI | GCGC | 3 cut(s) | 388, 547, 691 |
| BstKTI | GATC | 6 cut(s) | 67, 169, 412, 1075, 1201, 1363 |
| BstMAI | GTCTC | 7 cut(s) | 117, 339, 446, 605, 749, 904, 931 |
| BstMBI | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 791, 892, 962 |
| BstNI | CCWGG | 4 cut(s) | 572, 716, 967, 1365 |
| BstSCI | CCNGG | 5 cut(s) | 537, 570, 714, 965, 1363 |
| BstV1I | GCAGC | 2 cut(s) | 256, 904 |
| BstX2I | RGATCY | 1 cut(s) | 409 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 530, 597, 741 |
| BstYI | RGATCY | 1 cut(s) | 409 |
| BstZ17I | GTATAC | 1 cut(s) | 435 |
| BsuI | GTATCC | 1 cut(s) | 1491 |
| BtgI | CCRYGG | 4 cut(s) | 329, 421, 580, 724 |
| BtgZI | GCGATG | 2 cut(s) | 163, 247 |
| BtrI | CACGTC | 1 cut(s) | 48 |
| BtsCI | GGATG | 8 cut(s) | 388, 557, 647, 667, 691, 701, 825, 1029 |
| Cac8I | GCNNGC | 1 cut(s) | 202 |
| CfoI | GCGC | 3 cut(s) | 388, 547, 691 |
| Cfr13I | GGNCC | 3 cut(s) | 568, 712, 850 |
| CseI | GACGC | 1 cut(s) | 884 |
| DdeI | CTNAG | 5 cut(s) | 299, 450, 609, 753, 1037 |
| DpnI | GATC | 6 cut(s) | 66, 168, 411, 1074, 1200, 1362 |
| DpnII | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 506, 809 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 506, 809 |
| Eam1104I | CTCTTC | 2 cut(s) | 1407, 1446 |
| EarI | CTCTTC | 2 cut(s) | 1407, 1446 |
| Eco130I | CCWWGG | 4 cut(s) | 157, 421, 580, 724 |
| Eco31I | GGTCTC | 2 cut(s) | 904, 931 |
| Eco47I | GGWCC | 3 cut(s) | 568, 712, 850 |
| Eco47III | AGCGCT | 1 cut(s) | 546 |
| Eco57I | CTGAAG | 1 cut(s) | 1386 |
| Eco88I | CYCGRG | 2 cut(s) | 661, 819 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1108, 1234 |
| EcoRII | CCWGG | 4 cut(s) | 570, 714, 965, 1363 |
| EcoT14I | CCWWGG | 4 cut(s) | 157, 421, 580, 724 |
| ErhI | CCWWGG | 4 cut(s) | 157, 421, 580, 724 |
| Esp3I | CGTCTC | 4 cut(s) | 117, 446, 605, 749 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| FblI | GTMKAC | 1 cut(s) | 434 |
| Fnu4HI | GCNGC | 4 cut(s) | 270, 489, 792, 893 |
| FokI | GGATG | 8 cut(s) | 395, 564, 634, 654, 698, 708, 812, 1036 |
| Fsp4HI | GCNGC | 4 cut(s) | 270, 489, 792, 893 |
| FspBI | CTAG | 5 cut(s) | 158, 389, 548, 692, 959 |
| GlaI | GCGC | 3 cut(s) | 387, 546, 690 |
| GluI | GCNGC | 4 cut(s) | 270, 489, 792, 893 |
| HaeII | RGCGCY | 1 cut(s) | 548 |
| HapII | CCGG | 2 cut(s) | 538, 899 |
| HgaI | GACGC | 1 cut(s) | 884 |
| HhaI | GCGC | 3 cut(s) | 388, 547, 691 |
| Hin6I | GCGC | 3 cut(s) | 386, 545, 689 |
| HinP1I | GCGC | 3 cut(s) | 386, 545, 689 |
| HindIII | AAGCTT | 1 cut(s) | 1031 |
| HinfI | GANTC | 6 cut(s) | 284, 446, 605, 644, 749, 1012 |
| HpaII | CCGG | 2 cut(s) | 538, 899 |
| HphI | GGTGA | 2 cut(s) | 230, 998 |
| Hpy166II | GTNNAC | 6 cut(s) | 435, 511, 568, 712, 814, 881 |
| Hpy188III | TCNNGA | 3 cut(s) | 12, 928, 1448 |
| Hpy8I | GTNNAC | 6 cut(s) | 435, 511, 568, 712, 814, 881 |
| HpyAV | CCTTC | 7 cut(s) | 46, 170, 209, 451, 610, 754, 1410 |
| HpyCH4III | ACNGT | 2 cut(s) | 330, 1357 |
| HpyCH4IV | ACGT | 2 cut(s) | 47, 1422 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 153, 956 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 791, 892, 962 |
| HpyF3I | CTNAG | 5 cut(s) | 299, 450, 609, 753, 1037 |
| HpySE526I | ACGT | 2 cut(s) | 47, 1422 |
| HspAI | GCGC | 3 cut(s) | 386, 545, 689 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| LmnI | GCTCC | 1 cut(s) | 266 |
| Lsp1109I | GCAGC | 2 cut(s) | 256, 904 |
| LweI | GCATC | 5 cut(s) | 140, 373, 377, 676, 952 |
| MaeI | CTAG | 5 cut(s) | 158, 389, 548, 692, 959 |
| MaeII | ACGT | 2 cut(s) | 47, 1422 |
| MaeIII | GTNAC | 6 cut(s) | 443, 602, 746, 1076, 1202, 1405 |
| MalI | GATC | 6 cut(s) | 66, 168, 411, 1074, 1200, 1362 |
| MboI | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| MboII | GAAGA | 8 cut(s) | 68, 140, 943, 1178, 1304, 1348, 1424, 1463 |
| MflI | RGATCY | 1 cut(s) | 409 |
| MlyI | GAGTC | 4 cut(s) | 440, 599, 653, 743 |
| MmeI | TCCRAC | 5 cut(s) | 447, 606, 750, 828, 1044 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1124, 1250, 1340 |
| MslI | CAYNNNNRTG | 3 cut(s) | 595, 739, 886 |
| MspI | CCGG | 2 cut(s) | 538, 899 |
| MspR9I | CCNGG | 5 cut(s) | 539, 572, 716, 967, 1365 |
| MvaI | CCWGG | 4 cut(s) | 572, 716, 967, 1365 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 791, 892, 962 |
| NciI | CCSGG | 1 cut(s) | 539 |
| NcoI | CCATGG | 3 cut(s) | 421, 580, 724 |
| NdeII | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| NlaIV | GGNNCC | 4 cut(s) | 419, 521, 578, 722 |
| NmuCI | GTSAC | 3 cut(s) | 443, 602, 746 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1124, 1250, 1340 |
| PfeI | GAWTC | 2 cut(s) | 284, 1012 |
| PfoI | TCCNGGA | 1 cut(s) | 537 |
| PkrI | GCNGC | 4 cut(s) | 271, 490, 793, 894 |
| PleI | GAGTC | 4 cut(s) | 440, 599, 652, 743 |
| PpsI | GAGTC | 4 cut(s) | 440, 599, 652, 743 |
| Psp1406I | AACGTT | 1 cut(s) | 1422 |
| Psp6I | CCWGG | 4 cut(s) | 570, 714, 965, 1363 |
| PspGI | CCWGG | 4 cut(s) | 570, 714, 965, 1363 |
| PspN4I | GGNNCC | 4 cut(s) | 419, 521, 578, 722 |
| PspPI | GGNCC | 3 cut(s) | 568, 712, 850 |
| PsuI | RGATCY | 1 cut(s) | 409 |
| RseI | CAYNNNNRTG | 3 cut(s) | 595, 739, 886 |
| SatI | GCNGC | 4 cut(s) | 270, 489, 792, 893 |
| Sau3AI | GATC | 6 cut(s) | 64, 166, 409, 1072, 1198, 1360 |
| Sau96I | GGNCC | 3 cut(s) | 568, 712, 850 |
| SchI | GAGTC | 4 cut(s) | 440, 599, 653, 743 |
| ScrFI | CCNGG | 5 cut(s) | 539, 572, 716, 967, 1365 |
| SfaNI | GCATC | 5 cut(s) | 140, 373, 377, 676, 952 |
| SinI | GGWCC | 3 cut(s) | 568, 712, 850 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 595, 739, 886 |
| SsiI | CCGC | 6 cut(s) | 173, 398, 488, 557, 701, 791 |
| SspMI | CTAG | 5 cut(s) | 158, 389, 548, 692, 959 |
| StyD4I | CCNGG | 5 cut(s) | 537, 570, 714, 965, 1363 |
| StyI | CCWWGG | 4 cut(s) | 157, 421, 580, 724 |
| TaaI | ACNGT | 2 cut(s) | 330, 1357 |
| TaiI | ACGT | 2 cut(s) | 50, 1425 |
| TaqI | TCGA | 2 cut(s) | 138, 929 |
| TauI | GCSGC | 2 cut(s) | 491, 794 |
| TfiI | GAWTC | 2 cut(s) | 284, 1012 |
| TseFI | GTSAC | 3 cut(s) | 443, 602, 746 |
| TseI | GCWGC | 2 cut(s) | 269, 892 |
| Tsp45I | GTSAC | 3 cut(s) | 443, 602, 746 |
| TspDTI | ATGAA | 7 cut(s) | 69, 232, 1082, 1117, 1208, 1243, 1433 |
| TspGWI | ACGGA | 2 cut(s) | 420, 1424 |
| VpaK11BI | GGWCC | 3 cut(s) | 568, 712, 850 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1108, 1234 |
| XapI | RAATTY | 3 cut(s) | 357, 1123, 1249 |
| XmaJI | CCTAGG | 1 cut(s) | 157 |
| XmiI | GTMKAC | 1 cut(s) | 434 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1124, 1250, 1340 |
| XspI | CTAG | 5 cut(s) | 158, 389, 548, 692, 959 |