ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 25 |
| AatII | GACGTC | 1 cut(s) | 351 |
| AccI | GTMKAC | 2 cut(s) | 34, 255 |
| AccII | CGCG | 1 cut(s) | 304 |
| AcuI | CTGAAG | 1 cut(s) | 208 |
| AcyI | GRCGYC | 1 cut(s) | 348 |
| AfaI | GTAC | 2 cut(s) | 91, 276 |
| AflIII | ACRYGT | 1 cut(s) | 302 |
| AgsI | TTSAA | 1 cut(s) | 157 |
| AjnI | CCWGG | 2 cut(s) | 92, 284 |
| AluBI | AGCT | 4 cut(s) | 130, 163, 220, 362 |
| AluI | AGCT | 4 cut(s) | 130, 163, 220, 362 |
| Alw26I | GTCTC | 2 cut(s) | 11, 37 |
| ApeKI | GCWGC | 3 cut(s) | 130, 217, 359 |
| AspS9I | GGNCC | 2 cut(s) | 27, 293 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 77, 203 |
| AvaII | GGWCC | 2 cut(s) | 27, 293 |
| BbvI | GCAGC | 2 cut(s) | 117, 229 |
| BccI | CCATC | 1 cut(s) | 179 |
| BciT130I | CCWGG | 2 cut(s) | 94, 286 |
| BcoDI | GTCTC | 2 cut(s) | 11, 37 |
| BfaI | CTAG | 1 cut(s) | 5 |
| BisI | GCNGC | 3 cut(s) | 131, 218, 360 |
| BlsI | GCNGC | 3 cut(s) | 132, 219, 361 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 286 |
| Bme18I | GGWCC | 2 cut(s) | 27, 293 |
| BmgT120I | GGNCC | 2 cut(s) | 27, 293 |
| BmiI | GGNNCC | 1 cut(s) | 28 |
| BmrFI | CCNGG | 2 cut(s) | 94, 286 |
| BmsI | GCATC | 2 cut(s) | 204, 220 |
| Bpu10I | CCTNAGC | 1 cut(s) | 174 |
| BsaAI | YACGTR | 1 cut(s) | 107 |
| BsaHI | GRCGYC | 1 cut(s) | 348 |
| BsaJI | CCNNGG | 1 cut(s) | 134 |
| BsaWI | WCCGGW | 1 cut(s) | 29 |
| Bse118I | RCCGGY | 1 cut(s) | 309 |
| BseBI | CCWGG | 2 cut(s) | 94, 286 |
| BseDI | CCNNGG | 1 cut(s) | 134 |
| BseGI | GGATG | 2 cut(s) | 190, 235 |
| BseMII | CTCAG | 2 cut(s) | 140, 188 |
| BseXI | GCAGC | 2 cut(s) | 117, 229 |
| Bsh1236I | CGCG | 1 cut(s) | 304 |
| BsiSI | CCGG | 4 cut(s) | 30, 296, 310, 356 |
| BsmAI | GTCTC | 2 cut(s) | 11, 37 |
| BspCNI | CTCAG | 2 cut(s) | 139, 187 |
| BspFNI | CGCG | 1 cut(s) | 304 |
| BspLI | GGNNCC | 1 cut(s) | 28 |
| BspQI | GCTCTTC | 1 cut(s) | 227 |
| BsrFI | RCCGGY | 1 cut(s) | 309 |
| BssAI | RCCGGY | 1 cut(s) | 309 |
| BssECI | CCNNGG | 1 cut(s) | 134 |
| BssNI | GRCGYC | 1 cut(s) | 348 |
| BssT1I | CCWWGG | 1 cut(s) | 134 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 286 |
| Bst4CI | ACNGT | 1 cut(s) | 89 |
| Bst6I | CTCTTC | 1 cut(s) | 227 |
| BstACI | GRCGYC | 1 cut(s) | 348 |
| BstBAI | YACGTR | 1 cut(s) | 107 |
| BstDEI | CTNAG | 2 cut(s) | 126, 174 |
| BstEII | GGTNACC | 1 cut(s) | 62 |
| BstF5I | GGATG | 2 cut(s) | 190, 235 |
| BstFNI | CGCG | 1 cut(s) | 304 |
| BstKTI | GATC | 1 cut(s) | 4 |
| BstMAI | GTCTC | 2 cut(s) | 11, 37 |
| BstNI | CCWGG | 2 cut(s) | 94, 286 |
| BstPI | GGTNACC | 1 cut(s) | 62 |
| BstSCI | CCNGG | 2 cut(s) | 92, 284 |
| BstUI | CGCG | 1 cut(s) | 304 |
| BstV1I | GCAGC | 2 cut(s) | 117, 229 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 285 |
| BtsCI | GGATG | 2 cut(s) | 190, 235 |
| Cfr10I | RCCGGY | 1 cut(s) | 309 |
| Cfr13I | GGNCC | 2 cut(s) | 27, 293 |
| CseI | GACGC | 1 cut(s) | 310 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 2 cut(s) | 90, 275 |
| CviAII | CATG | 1 cut(s) | 339 |
| CviJI | RGCY | 5 cut(s) | 54, 130, 163, 220, 362 |
| CviKI_1 | RGCY | 5 cut(s) | 54, 130, 163, 220, 362 |
| CviQI | GTAC | 2 cut(s) | 90, 275 |
| DdeI | CTNAG | 2 cut(s) | 126, 174 |
| DpnI | GATC | 1 cut(s) | 3 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 25 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 25 |
| Eam1104I | CTCTTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 1 cut(s) | 227 |
| Eco130I | CCWWGG | 1 cut(s) | 134 |
| Eco47I | GGWCC | 2 cut(s) | 27, 293 |
| Eco57I | CTGAAG | 1 cut(s) | 208 |
| Eco91I | GGTNACC | 1 cut(s) | 62 |
| EcoO65I | GGTNACC | 1 cut(s) | 62 |
| EcoRII | CCWGG | 2 cut(s) | 92, 284 |
| EcoT14I | CCWWGG | 1 cut(s) | 134 |
| ErhI | CCWWGG | 1 cut(s) | 134 |
| FaeI | CATG | 1 cut(s) | 342 |
| FaiI | YATR | 3 cut(s) | 60, 71, 340 |
| FatI | CATG | 1 cut(s) | 338 |
| FblI | GTMKAC | 2 cut(s) | 34, 255 |
| Fnu4HI | GCNGC | 3 cut(s) | 131, 218, 360 |
| FokI | GGATG | 2 cut(s) | 197, 242 |
| Fsp4HI | GCNGC | 3 cut(s) | 131, 218, 360 |
| FspBI | CTAG | 1 cut(s) | 5 |
| GluI | GCNGC | 3 cut(s) | 131, 218, 360 |
| HapII | CCGG | 4 cut(s) | 30, 296, 310, 356 |
| HgaI | GACGC | 1 cut(s) | 310 |
| Hin1I | GRCGYC | 1 cut(s) | 348 |
| Hin1II | CATG | 1 cut(s) | 342 |
| HincII | GTYRAC | 1 cut(s) | 256 |
| HindII | GTYRAC | 1 cut(s) | 256 |
| HinfI | GANTC | 2 cut(s) | 122, 264 |
| HpaII | CCGG | 4 cut(s) | 30, 296, 310, 356 |
| HphI | GGTGA | 3 cut(s) | 56, 77, 203 |
| Hpy166II | GTNNAC | 2 cut(s) | 35, 256 |
| Hpy188I | TCNGA | 1 cut(s) | 247 |
| Hpy188III | TCNNGA | 2 cut(s) | 5, 176 |
| Hpy8I | GTNNAC | 2 cut(s) | 35, 256 |
| Hpy99I | CGWCG | 2 cut(s) | 304, 334 |
| HpyAV | CCTTC | 2 cut(s) | 175, 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 89 |
| HpyCH4IV | ACGT | 3 cut(s) | 37, 106, 348 |
| HpyCH4V | TGCA | 2 cut(s) | 217, 233 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 174 |
| HpySE526I | ACGT | 3 cut(s) | 37, 106, 348 |
| Hsp92I | GRCGYC | 1 cut(s) | 348 |
| Hsp92II | CATG | 1 cut(s) | 342 |
| LguI | GCTCTTC | 1 cut(s) | 227 |
| LpnPI | CCDG | 9 cut(s) | 43, 79, 106, 161, 211, 271, 298, 309, 323 |
| Lsp1109I | GCAGC | 2 cut(s) | 117, 229 |
| LweI | GCATC | 2 cut(s) | 204, 220 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 1 cut(s) | 5 |
| MaeII | ACGT | 3 cut(s) | 37, 106, 348 |
| MaeIII | GTNAC | 2 cut(s) | 62, 83 |
| MalI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 214 |
| MluCI | AATT | 1 cut(s) | 248 |
| MluI | ACGCGT | 1 cut(s) | 302 |
| MmeI | TCCRAC | 2 cut(s) | 20, 324 |
| MnlI | CCTC | 4 cut(s) | 112, 192, 314, 346 |
| MspA1I | CMGCKG | 1 cut(s) | 130 |
| MspI | CCGG | 4 cut(s) | 30, 296, 310, 356 |
| MspR9I | CCNGG | 2 cut(s) | 94, 286 |
| MvaI | CCWGG | 2 cut(s) | 94, 286 |
| MvnI | CGCG | 1 cut(s) | 304 |
| NlaIII | CATG | 1 cut(s) | 342 |
| NlaIV | GGNNCC | 1 cut(s) | 28 |
| NmuCI | GTSAC | 2 cut(s) | 62, 83 |
| PciSI | GCTCTTC | 1 cut(s) | 227 |
| PfeI | GAWTC | 2 cut(s) | 122, 264 |
| PkrI | GCNGC | 3 cut(s) | 132, 219, 361 |
| Ppu21I | YACGTR | 1 cut(s) | 107 |
| Psp6I | CCWGG | 2 cut(s) | 92, 284 |
| PspEI | GGTNACC | 1 cut(s) | 62 |
| PspGI | CCWGG | 2 cut(s) | 92, 284 |
| PspN4I | GGNNCC | 1 cut(s) | 28 |
| PspPI | GGNCC | 2 cut(s) | 27, 293 |
| PvuII | CAGCTG | 1 cut(s) | 130 |
| RsaI | GTAC | 2 cut(s) | 91, 276 |
| RsaNI | GTAC | 2 cut(s) | 90, 275 |
| SalI | GTCGAC | 1 cut(s) | 254 |
| SapI | GCTCTTC | 1 cut(s) | 227 |
| SatI | GCNGC | 3 cut(s) | 131, 218, 360 |
| Sau96I | GGNCC | 2 cut(s) | 27, 293 |
| ScrFI | CCNGG | 2 cut(s) | 94, 286 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfaNI | GCATC | 2 cut(s) | 204, 220 |
| SinI | GGWCC | 2 cut(s) | 27, 293 |
| Sse9I | AATT | 1 cut(s) | 248 |
| SspMI | CTAG | 1 cut(s) | 5 |
| StyD4I | CCNGG | 2 cut(s) | 92, 284 |
| StyI | CCWWGG | 1 cut(s) | 134 |
| TaaI | ACNGT | 1 cut(s) | 89 |
| TaiI | ACGT | 3 cut(s) | 40, 109, 351 |
| TaqI | TCGA | 1 cut(s) | 255 |
| TasI | AATT | 1 cut(s) | 248 |
| TfiI | GAWTC | 2 cut(s) | 122, 264 |
| TseFI | GTSAC | 2 cut(s) | 62, 83 |
| TseI | GCWGC | 3 cut(s) | 130, 217, 359 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 83 |
| TspGWI | ACGGA | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 2 cut(s) | 27, 293 |
| XbaI | TCTAGA | 1 cut(s) | 4 |
| XmiI | GTMKAC | 2 cut(s) | 34, 255 |
| XspI | CTAG | 1 cut(s) | 5 |
| ZraI | GACGTC | 1 cut(s) | 349 |