ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 165, 258 |
| AccBSI | CCGCTC | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 539 |
| AciI | CCGC | 3 cut(s) | 463, 587, 644 |
| AcyI | GRCGYC | 1 cut(s) | 353 |
| AfaI | GTAC | 2 cut(s) | 247, 633 |
| AfeI | AGCGCT | 1 cut(s) | 141 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 399, 573, 738 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgeI | ACCGGT | 1 cut(s) | 338 |
| AgsI | TTSAA | 7 cut(s) | 136, 421, 433, 533, 627, 688, 747 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 3 cut(s) | 56, 497, 738 |
| AluI | AGCT | 3 cut(s) | 56, 497, 738 |
| Alw21I | GWGCWC | 1 cut(s) | 713 |
| Alw26I | GTCTC | 3 cut(s) | 101, 301, 504 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| Aor51HI | AGCGCT | 1 cut(s) | 141 |
| AoxI | GGCC | 1 cut(s) | 455 |
| ApeKI | GCWGC | 1 cut(s) | 142 |
| AsiGI | ACCGGT | 1 cut(s) | 338 |
| AspLEI | GCGC | 5 cut(s) | 124, 142, 166, 259, 539 |
| AspS9I | GGNCC | 2 cut(s) | 287, 455 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 353 |
| AvaII | GGWCC | 1 cut(s) | 287 |
| Bbv12I | GWGCWC | 1 cut(s) | 713 |
| BbvI | GCAGC | 1 cut(s) | 129 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BcoDI | GTCTC | 3 cut(s) | 101, 301, 504 |
| BfaI | CTAG | 3 cut(s) | 51, 515, 524 |
| BfoI | RGCGCY | 1 cut(s) | 143 |
| BisI | GCNGC | 1 cut(s) | 143 |
| BlsI | GCNGC | 1 cut(s) | 144 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 1 cut(s) | 287 |
| BmgT120I | GGNCC | 2 cut(s) | 287, 455 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmrI | ACTGGG | 1 cut(s) | 642 |
| BmsI | GCATC | 1 cut(s) | 268 |
| BmuI | ACTGGG | 1 cut(s) | 642 |
| BpmI | CTGGAG | 2 cut(s) | 219, 718 |
| Bpu10I | CCTNAGC | 1 cut(s) | 125 |
| BsaAI | YACGTR | 1 cut(s) | 371 |
| BsaBI | GATNNNNATC | 3 cut(s) | 231, 407, 657 |
| BsaHI | GRCGYC | 1 cut(s) | 353 |
| BsaI | GGTCTC | 1 cut(s) | 504 |
| BsaJI | CCNNGG | 2 cut(s) | 299, 398 |
| BsaWI | WCCGGW | 1 cut(s) | 338 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 444, 474, 501, 531 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 399, 573, 738 |
| Bse118I | RCCGGY | 1 cut(s) | 338 |
| Bse1I | ACTGG | 1 cut(s) | 648 |
| Bse8I | GATNNNNATC | 3 cut(s) | 231, 407, 657 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 2 cut(s) | 299, 398 |
| BseJI | GATNNNNATC | 3 cut(s) | 231, 407, 657 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 399, 573, 738 |
| BseMII | CTCAG | 1 cut(s) | 173 |
| BseNI | ACTGG | 1 cut(s) | 648 |
| BseXI | GCAGC | 1 cut(s) | 129 |
| Bsh1236I | CGCG | 1 cut(s) | 539 |
| Bsh1285I | CGRYCG | 1 cut(s) | 467 |
| BshFI | GGCC | 1 cut(s) | 457 |
| BshTI | ACCGGT | 1 cut(s) | 338 |
| BsiEI | CGRYCG | 1 cut(s) | 467 |
| BsiHKAI | GWGCWC | 1 cut(s) | 713 |
| BsiSI | CCGG | 1 cut(s) | 339 |
| BslFI | GGGAC | 1 cut(s) | 607 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 399, 573, 738 |
| BsmAI | GTCTC | 3 cut(s) | 101, 301, 504 |
| BsmFI | GGGAC | 1 cut(s) | 607 |
| BsmI | GAATGC | 1 cut(s) | 562 |
| BsnI | GGCC | 1 cut(s) | 457 |
| Bso31I | GGTCTC | 1 cut(s) | 504 |
| Bsp1286I | GDGCHC | 1 cut(s) | 713 |
| Bsp143I | GATC | 3 cut(s) | 232, 520, 658 |
| Bsp19I | CCATGG | 1 cut(s) | 398 |
| BspACI | CCGC | 3 cut(s) | 463, 587, 644 |
| BspANI | GGCC | 1 cut(s) | 457 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspFNI | CGCG | 1 cut(s) | 539 |
| BspTNI | GGTCTC | 1 cut(s) | 504 |
| BsrBI | CCGCTC | 1 cut(s) | 587 |
| BsrFI | RCCGGY | 1 cut(s) | 338 |
| BsrI | ACTGG | 1 cut(s) | 648 |
| BssAI | RCCGGY | 1 cut(s) | 338 |
| BssECI | CCNNGG | 2 cut(s) | 299, 398 |
| BssMI | GATC | 3 cut(s) | 232, 520, 658 |
| BssNI | GRCGYC | 1 cut(s) | 353 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 3 cut(s) | 300, 326, 576 |
| BstACI | GRCGYC | 1 cut(s) | 353 |
| BstBAI | YACGTR | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 2 cut(s) | 195, 334 |
| BstDEI | CTNAG | 3 cut(s) | 125, 171, 182 |
| BstDSI | CCRYGG | 2 cut(s) | 299, 398 |
| BstFNI | CGCG | 1 cut(s) | 539 |
| BstH2I | RGCGCY | 1 cut(s) | 143 |
| BstHHI | GCGC | 5 cut(s) | 124, 142, 166, 259, 539 |
| BstKTI | GATC | 3 cut(s) | 235, 523, 661 |
| BstMAI | GTCTC | 3 cut(s) | 101, 301, 504 |
| BstMBI | GATC | 3 cut(s) | 232, 520, 658 |
| BstMCI | CGRYCG | 1 cut(s) | 467 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstUI | CGCG | 1 cut(s) | 539 |
| BstV1I | GCAGC | 1 cut(s) | 129 |
| BsuRI | GGCC | 1 cut(s) | 457 |
| BtgI | CCRYGG | 2 cut(s) | 299, 398 |
| BtsI | GCAGTG | 1 cut(s) | 679 |
| BtsIMutI | CAGTG | 3 cut(s) | 124, 655, 679 |
| Cac8I | GCNNGC | 2 cut(s) | 195, 334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CfoI | GCGC | 5 cut(s) | 124, 142, 166, 259, 539 |
| Cfr10I | RCCGGY | 1 cut(s) | 338 |
| Cfr13I | GGNCC | 2 cut(s) | 287, 455 |
| CseI | GACGC | 2 cut(s) | 278, 342 |
| CsiI | ACCWGGT | 1 cut(s) | 289 |
| Csp6I | GTAC | 2 cut(s) | 246, 632 |
| CspAI | ACCGGT | 1 cut(s) | 338 |
| CviAII | CATG | 4 cut(s) | 239, 399, 549, 603 |
| CviJI | RGCY | 8 cut(s) | 56, 85, 197, 380, 457, 486, 497, 738 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 85, 197, 380, 457, 486, 497, 738 |
| CviQI | GTAC | 2 cut(s) | 246, 632 |
| DdeI | CTNAG | 3 cut(s) | 125, 171, 182 |
| DpnI | GATC | 3 cut(s) | 234, 522, 660 |
| DpnII | GATC | 3 cut(s) | 232, 520, 658 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco31I | GGTCTC | 1 cut(s) | 504 |
| Eco47I | GGWCC | 1 cut(s) | 287 |
| Eco47III | AGCGCT | 1 cut(s) | 141 |
| EcoO109I | RGGNCCY | 2 cut(s) | 287, 455 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 4 cut(s) | 242, 402, 552, 606 |
| FaiI | YATR | 9 cut(s) | 8, 147, 240, 264, 330, 400, 507, 550, 604 |
| FaqI | GGGAC | 1 cut(s) | 607 |
| FatI | CATG | 4 cut(s) | 238, 398, 548, 602 |
| Fnu4HI | GCNGC | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 1 cut(s) | 143 |
| FspBI | CTAG | 3 cut(s) | 51, 515, 524 |
| FspI | TGCGCA | 2 cut(s) | 165, 258 |
| GlaI | GCGC | 5 cut(s) | 123, 141, 165, 258, 538 |
| GluI | GCNGC | 1 cut(s) | 143 |
| GsuI | CTGGAG | 2 cut(s) | 219, 718 |
| HaeII | RGCGCY | 1 cut(s) | 143 |
| HaeIII | GGCC | 1 cut(s) | 457 |
| HapII | CCGG | 1 cut(s) | 339 |
| HgaI | GACGC | 2 cut(s) | 278, 342 |
| HhaI | GCGC | 5 cut(s) | 124, 142, 166, 259, 539 |
| Hin1I | GRCGYC | 1 cut(s) | 353 |
| Hin1II | CATG | 4 cut(s) | 242, 402, 552, 606 |
| Hin6I | GCGC | 5 cut(s) | 122, 140, 164, 257, 537 |
| HinP1I | GCGC | 5 cut(s) | 122, 140, 164, 257, 537 |
| HindIII | AAGCTT | 1 cut(s) | 495 |
| HinfI | GANTC | 4 cut(s) | 30, 389, 653, 724 |
| HpaII | CCGG | 1 cut(s) | 339 |
| HphI | GGTGA | 2 cut(s) | 305, 353 |
| Hpy166II | GTNNAC | 2 cut(s) | 296, 344 |
| Hpy188I | TCNGA | 5 cut(s) | 42, 223, 469, 658, 723 |
| Hpy8I | GTNNAC | 2 cut(s) | 296, 344 |
| Hpy99I | CGWCG | 1 cut(s) | 272 |
| HpyAV | CCTTC | 1 cut(s) | 404 |
| HpyCH4III | ACNGT | 3 cut(s) | 300, 326, 576 |
| HpyCH4IV | ACGT | 2 cut(s) | 346, 370 |
| HpyCH4V | TGCA | 5 cut(s) | 24, 145, 332, 560, 701 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 171, 182 |
| HpySE526I | ACGT | 2 cut(s) | 346, 370 |
| Hsp92I | GRCGYC | 1 cut(s) | 353 |
| Hsp92II | CATG | 4 cut(s) | 242, 402, 552, 606 |
| HspAI | GCGC | 5 cut(s) | 122, 140, 164, 257, 537 |
| Kzo9I | GATC | 3 cut(s) | 232, 520, 658 |
| LmnI | GCTCC | 1 cut(s) | 700 |
| Lsp1109I | GCAGC | 1 cut(s) | 129 |
| LweI | GCATC | 1 cut(s) | 268 |
| MabI | ACCWGGT | 1 cut(s) | 289 |
| MaeI | CTAG | 3 cut(s) | 51, 515, 524 |
| MaeII | ACGT | 2 cut(s) | 346, 370 |
| MalI | GATC | 3 cut(s) | 234, 522, 660 |
| MbiI | CCGCTC | 1 cut(s) | 587 |
| MboI | GATC | 3 cut(s) | 232, 520, 658 |
| MboII | GAAGA | 2 cut(s) | 236, 553 |
| MhlI | GDGCHC | 1 cut(s) | 713 |
| MluCI | AATT | 3 cut(s) | 19, 152, 569 |
| MlyI | GAGTC | 1 cut(s) | 383 |
| MmeI | TCCRAC | 3 cut(s) | 65, 447, 558 |
| MnlI | CCTC | 6 cut(s) | 54, 96, 194, 446, 476, 742 |
| MspA1I | CMGCKG | 1 cut(s) | 738 |
| MspI | CCGG | 1 cut(s) | 339 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| Mva1269I | GAATGC | 1 cut(s) | 562 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MvnI | CGCG | 1 cut(s) | 539 |
| NcoI | CCATGG | 1 cut(s) | 398 |
| NdeII | GATC | 3 cut(s) | 232, 520, 658 |
| NlaIII | CATG | 4 cut(s) | 242, 402, 552, 606 |
| NsbI | TGCGCA | 2 cut(s) | 165, 258 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 562 |
| PfeI | GAWTC | 3 cut(s) | 30, 653, 724 |
| PinAI | ACCGGT | 1 cut(s) | 338 |
| PkrI | GCNGC | 1 cut(s) | 144 |
| PleI | GAGTC | 1 cut(s) | 383 |
| PpsI | GAGTC | 1 cut(s) | 383 |
| Ppu21I | YACGTR | 1 cut(s) | 371 |
| PpuMI | RGGWCCY | 1 cut(s) | 287 |
| PscI | ACATGT | 1 cut(s) | 238 |
| Psp5II | RGGWCCY | 1 cut(s) | 287 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspPI | GGNCC | 2 cut(s) | 287, 455 |
| PspPPI | RGGWCCY | 1 cut(s) | 287 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| PvuII | CAGCTG | 1 cut(s) | 738 |
| RsaI | GTAC | 2 cut(s) | 247, 633 |
| RsaNI | GTAC | 2 cut(s) | 246, 632 |
| SatI | GCNGC | 1 cut(s) | 143 |
| Sau3AI | GATC | 3 cut(s) | 232, 520, 658 |
| Sau96I | GGNCC | 2 cut(s) | 287, 455 |
| SchI | GAGTC | 1 cut(s) | 383 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 713 |
| SexAI | ACCWGGT | 1 cut(s) | 289 |
| SfaNI | GCATC | 1 cut(s) | 268 |
| SgrAI | CRCCGGYG | 1 cut(s) | 338 |
| SinI | GGWCC | 1 cut(s) | 287 |
| Sse9I | AATT | 3 cut(s) | 19, 152, 569 |
| SsiI | CCGC | 3 cut(s) | 463, 587, 644 |
| SspMI | CTAG | 3 cut(s) | 51, 515, 524 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 3 cut(s) | 300, 326, 576 |
| TaiI | ACGT | 2 cut(s) | 349, 373 |
| TaqI | TCGA | 1 cut(s) | 267 |
| TasI | AATT | 3 cut(s) | 19, 152, 569 |
| TfiI | GAWTC | 3 cut(s) | 30, 653, 724 |
| TscAI | CASTG | 3 cut(s) | 124, 655, 686 |
| TseI | GCWGC | 1 cut(s) | 142 |
| TspDTI | ATGAA | 1 cut(s) | 716 |
| TspGWI | ACGGA | 2 cut(s) | 233, 479 |
| TspRI | CASTG | 3 cut(s) | 124, 655, 686 |
| VpaK11BI | GGWCC | 1 cut(s) | 287 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XspI | CTAG | 3 cut(s) | 51, 515, 524 |