ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 59 |
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AccIII | TCCGGA | 1 cut(s) | 277 |
| AciI | CCGC | 1 cut(s) | 202 |
| AclWI | GGATC | 1 cut(s) | 42 |
| AcsI | RAATTY | 2 cut(s) | 79, 237 |
| AfaI | GTAC | 3 cut(s) | 61, 211, 375 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 277 |
| AgsI | TTSAA | 3 cut(s) | 219, 250, 257 |
| AluBI | AGCT | 2 cut(s) | 260, 305 |
| AluI | AGCT | 2 cut(s) | 260, 305 |
| Alw26I | GTCTC | 1 cut(s) | 80 |
| AlwI | GGATC | 1 cut(s) | 42 |
| Aor13HI | TCCGGA | 1 cut(s) | 277 |
| AoxI | GGCC | 1 cut(s) | 18 |
| ApoI | RAATTY | 2 cut(s) | 79, 237 |
| Asp718I | GGTACC | 1 cut(s) | 59 |
| AspA2I | CCTAGG | 1 cut(s) | 46 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AsuHPI | GGTGA | 1 cut(s) | 337 |
| AvaII | GGWCC | 1 cut(s) | 43 |
| AvrII | CCTAGG | 1 cut(s) | 46 |
| BaeGI | GKGCMC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 80 |
| BfaI | CTAG | 2 cut(s) | 47, 101 |
| BlnI | CCTAGG | 1 cut(s) | 46 |
| Bme18I | GGWCC | 1 cut(s) | 43 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 2 cut(s) | 61, 269 |
| BmrI | ACTGGG | 1 cut(s) | 165 |
| BmuI | ACTGGG | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 2 cut(s) | 21, 46 |
| BsaWI | WCCGGW | 1 cut(s) | 277 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 277 |
| Bse1I | ACTGG | 3 cut(s) | 45, 171, 381 |
| BseAI | TCCGGA | 1 cut(s) | 277 |
| BseDI | CCNNGG | 2 cut(s) | 21, 46 |
| BseGI | GGATG | 1 cut(s) | 274 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BseNI | ACTGG | 3 cut(s) | 45, 171, 381 |
| BseSI | GKGCMC | 1 cut(s) | 30 |
| BsgI | GTGCAG | 2 cut(s) | 100, 129 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BsiSI | CCGG | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BsmAI | GTCTC | 1 cut(s) | 80 |
| BsnI | GGCC | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| Bsp13I | TCCGGA | 1 cut(s) | 277 |
| Bsp143I | GATC | 2 cut(s) | 34, 181 |
| BspACI | CCGC | 1 cut(s) | 202 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BspEI | TCCGGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 2 cut(s) | 61, 269 |
| BspPI | GGATC | 1 cut(s) | 42 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BsrI | ACTGG | 3 cut(s) | 45, 171, 381 |
| BssECI | CCNNGG | 2 cut(s) | 21, 46 |
| BssMI | GATC | 2 cut(s) | 34, 181 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 46 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstEII | GGTNACC | 1 cut(s) | 343 |
| BstF5I | GGATG | 1 cut(s) | 274 |
| BstKTI | GATC | 2 cut(s) | 37, 184 |
| BstMAI | GTCTC | 1 cut(s) | 80 |
| BstMBI | GATC | 2 cut(s) | 34, 181 |
| BstPI | GGTNACC | 1 cut(s) | 343 |
| BstSLI | GKGCMC | 1 cut(s) | 30 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 340 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtsCI | GGATG | 1 cut(s) | 274 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| Csp6I | GTAC | 3 cut(s) | 60, 210, 374 |
| CviAII | CATG | 1 cut(s) | 334 |
| CviJI | RGCY | 6 cut(s) | 9, 20, 100, 260, 268, 305 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 20, 100, 260, 268, 305 |
| CviQI | GTAC | 3 cut(s) | 60, 210, 374 |
| DpnI | GATC | 2 cut(s) | 36, 183 |
| DpnII | GATC | 2 cut(s) | 34, 181 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 46 |
| Eco147I | AGGCCT | 1 cut(s) | 20 |
| Eco32I | GATATC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 43 |
| Eco91I | GGTNACC | 1 cut(s) | 343 |
| EcoO65I | GGTNACC | 1 cut(s) | 343 |
| EcoRI | GAATTC | 1 cut(s) | 237 |
| EcoRV | GATATC | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 46 |
| ErhI | CCWWGG | 2 cut(s) | 21, 46 |
| FaeI | CATG | 1 cut(s) | 337 |
| FaiI | YATR | 7 cut(s) | 186, 188, 194, 243, 323, 335, 363 |
| FatI | CATG | 1 cut(s) | 333 |
| FauI | CCCGC | 1 cut(s) | 195 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FokI | GGATG | 1 cut(s) | 261 |
| FspBI | CTAG | 2 cut(s) | 47, 101 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| HapII | CCGG | 1 cut(s) | 278 |
| Hin1II | CATG | 1 cut(s) | 337 |
| HincII | GTYRAC | 2 cut(s) | 69, 233 |
| HindII | GTYRAC | 2 cut(s) | 69, 233 |
| HindIII | AAGCTT | 2 cut(s) | 258, 303 |
| HinfI | GANTC | 2 cut(s) | 176, 246 |
| HpaII | CCGG | 1 cut(s) | 278 |
| HphI | GGTGA | 1 cut(s) | 337 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 233 |
| Hpy188I | TCNGA | 1 cut(s) | 181 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 278 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 233 |
| HpyAV | CCTTC | 2 cut(s) | 132, 145 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4IV | ACGT | 1 cut(s) | 71 |
| HpyCH4V | TGCA | 2 cut(s) | 110, 117 |
| HpySE526I | ACGT | 1 cut(s) | 71 |
| Hsp92II | CATG | 1 cut(s) | 337 |
| Kpn2I | TCCGGA | 1 cut(s) | 277 |
| KpnI | GGTACC | 1 cut(s) | 63 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 34, 181 |
| LmnI | GCTCC | 2 cut(s) | 172, 273 |
| LpnPI | CCDG | 6 cut(s) | 26, 41, 184, 291, 362, 362 |
| MaeI | CTAG | 2 cut(s) | 47, 101 |
| MaeII | ACGT | 1 cut(s) | 71 |
| MaeIII | GTNAC | 2 cut(s) | 173, 343 |
| MalI | GATC | 2 cut(s) | 36, 183 |
| MboI | GATC | 2 cut(s) | 34, 181 |
| MboII | GAAGA | 1 cut(s) | 364 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MluCI | AATT | 3 cut(s) | 79, 219, 237 |
| MlyI | GAGTC | 1 cut(s) | 170 |
| MmeI | TCCRAC | 1 cut(s) | 295 |
| MnlI | CCTC | 2 cut(s) | 10, 90 |
| MroI | TCCGGA | 1 cut(s) | 277 |
| MseI | TTAA | 1 cut(s) | 297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 338 |
| MspI | CCGG | 1 cut(s) | 278 |
| NdeII | GATC | 2 cut(s) | 34, 181 |
| NlaIII | CATG | 1 cut(s) | 337 |
| NlaIV | GGNNCC | 2 cut(s) | 61, 269 |
| NmuCI | GTSAC | 2 cut(s) | 173, 343 |
| PceI | AGGCCT | 1 cut(s) | 20 |
| PfeI | GAWTC | 1 cut(s) | 246 |
| PleI | GAGTC | 1 cut(s) | 170 |
| PpsI | GAGTC | 1 cut(s) | 170 |
| PspEI | GGTNACC | 1 cut(s) | 343 |
| PspN4I | GGNNCC | 2 cut(s) | 61, 269 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| RsaI | GTAC | 3 cut(s) | 61, 211, 375 |
| RsaNI | GTAC | 3 cut(s) | 60, 210, 374 |
| RseI | CAYNNNNRTG | 1 cut(s) | 338 |
| SaqAI | TTAA | 1 cut(s) | 297 |
| Sau3AI | GATC | 2 cut(s) | 34, 181 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| SchI | GAGTC | 1 cut(s) | 170 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SetI | ASST | 7 cut(s) | 48, 74, 106, 124, 156, 262, 307 |
| SinI | GGWCC | 1 cut(s) | 43 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 338 |
| Sse9I | AATT | 3 cut(s) | 79, 219, 237 |
| SseBI | AGGCCT | 1 cut(s) | 20 |
| SsiI | CCGC | 1 cut(s) | 202 |
| SspMI | CTAG | 2 cut(s) | 47, 101 |
| StuI | AGGCCT | 1 cut(s) | 20 |
| StyI | CCWWGG | 2 cut(s) | 21, 46 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaiI | ACGT | 1 cut(s) | 74 |
| TaqI | TCGA | 1 cut(s) | 403 |
| TasI | AATT | 3 cut(s) | 79, 219, 237 |
| TatI | WGTACW | 1 cut(s) | 209 |
| TfiI | GAWTC | 1 cut(s) | 246 |
| Tru1I | TTAA | 1 cut(s) | 297 |
| Tru9I | TTAA | 1 cut(s) | 297 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseFI | GTSAC | 2 cut(s) | 173, 343 |
| Tsp45I | GTSAC | 2 cut(s) | 173, 343 |
| TspDTI | ATGAA | 2 cut(s) | 149, 230 |
| TspRI | CASTG | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 1 cut(s) | 43 |
| XapI | RAATTY | 2 cut(s) | 79, 237 |
| XmaJI | CCTAGG | 1 cut(s) | 46 |
| XspI | CTAG | 2 cut(s) | 47, 101 |