ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 170 |
| Acc36I | ACCTGC | 1 cut(s) | 170 |
| AccB1I | GGYRCC | 1 cut(s) | 789 |
| AccII | CGCG | 1 cut(s) | 448 |
| AciI | CCGC | 4 cut(s) | 286, 324, 446, 584 |
| AclWI | GGATC | 4 cut(s) | 211, 217, 1151, 1164 |
| AcsI | RAATTY | 2 cut(s) | 411, 902 |
| AcuI | CTGAAG | 2 cut(s) | 1022, 1038 |
| AdeI | CACNNNGTG | 1 cut(s) | 35 |
| AfaI | GTAC | 3 cut(s) | 393, 980, 1133 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 330, 613, 888 |
| AgsI | TTSAA | 6 cut(s) | 43, 89, 237, 719, 821, 1127 |
| AjnI | CCWGG | 2 cut(s) | 316, 1147 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 545, 577 |
| AluBI | AGCT | 1 cut(s) | 600 |
| AluI | AGCT | 1 cut(s) | 600 |
| Alw21I | GWGCWC | 1 cut(s) | 81 |
| Alw26I | GTCTC | 3 cut(s) | 96, 542, 835 |
| AlwI | GGATC | 4 cut(s) | 211, 217, 1151, 1164 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 784 |
| Ama87I | CYCGRG | 1 cut(s) | 612 |
| AoxI | GGCC | 2 cut(s) | 321, 804 |
| ApeKI | GCWGC | 2 cut(s) | 229, 763 |
| ApoI | RAATTY | 2 cut(s) | 411, 902 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1035 |
| AspA2I | CCTAGG | 1 cut(s) | 136 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| AspS9I | GGNCC | 3 cut(s) | 321, 505, 643 |
| AsuC2I | CCSGG | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 2 cut(s) | 223, 1120 |
| AvaI | CYCGRG | 1 cut(s) | 612 |
| AvaII | GGWCC | 2 cut(s) | 505, 643 |
| AvrII | CCTAGG | 1 cut(s) | 136 |
| BaeGI | GKGCMC | 1 cut(s) | 792 |
| BamHI | GGATCC | 1 cut(s) | 1156 |
| BanI | GGYRCC | 1 cut(s) | 789 |
| BbsI | GAAGAC | 2 cut(s) | 371, 448 |
| Bbv12I | GWGCWC | 1 cut(s) | 81 |
| BbvI | GCAGC | 2 cut(s) | 241, 775 |
| BccI | CCATC | 3 cut(s) | 269, 431, 1007 |
| BceAI | ACGGC | 2 cut(s) | 47, 597 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 58, 92 |
| BciT130I | CCWGG | 2 cut(s) | 318, 1149 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcnI | CCSGG | 1 cut(s) | 476 |
| BcoDI | GTCTC | 3 cut(s) | 96, 542, 835 |
| BfaI | CTAG | 3 cut(s) | 137, 188, 633 |
| BfoI | RGCGCY | 1 cut(s) | 295 |
| BfuAI | ACCTGC | 1 cut(s) | 170 |
| BglII | AGATCT | 1 cut(s) | 45 |
| BisI | GCNGC | 3 cut(s) | 230, 324, 764 |
| BlnI | CCTAGG | 1 cut(s) | 136 |
| BlsI | GCNGC | 3 cut(s) | 231, 325, 765 |
| Bme1390I | CCNGG | 3 cut(s) | 318, 476, 1149 |
| Bme18I | GGWCC | 2 cut(s) | 505, 643 |
| BmeT110I | CYCGRG | 1 cut(s) | 612 |
| BmgT120I | GGNCC | 3 cut(s) | 321, 505, 643 |
| BmiI | GGNNCC | 4 cut(s) | 322, 473, 791, 1158 |
| BmrFI | CCNGG | 3 cut(s) | 318, 476, 1149 |
| BmsI | GCATC | 2 cut(s) | 244, 431 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1187, 1201 |
| BpiI | GAAGAC | 2 cut(s) | 371, 448 |
| BpuEI | CTTGAG | 2 cut(s) | 338, 824 |
| BpuMI | CCSGG | 1 cut(s) | 476 |
| BsaBI | GATNNNNATC | 2 cut(s) | 50, 221 |
| BsaJI | CCNNGG | 2 cut(s) | 136, 317 |
| BsaWI | WCCGGW | 1 cut(s) | 451 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1106, 1136 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 330, 613, 888 |
| Bse1I | ACTGG | 1 cut(s) | 1158 |
| Bse3DI | GCAATG | 1 cut(s) | 264 |
| Bse8I | GATNNNNATC | 2 cut(s) | 50, 221 |
| BseBI | CCWGG | 2 cut(s) | 318, 1149 |
| BseDI | CCNNGG | 2 cut(s) | 136, 317 |
| BseGI | GGATG | 3 cut(s) | 442, 603, 618 |
| BseJI | GATNNNNATC | 2 cut(s) | 50, 221 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 330, 613, 888 |
| BseMI | GCAATG | 1 cut(s) | 264 |
| BseMII | CTCAG | 1 cut(s) | 1103 |
| BseNI | ACTGG | 1 cut(s) | 1158 |
| BseRI | GAGGAG | 3 cut(s) | 709, 1079, 1118 |
| BseSI | GKGCMC | 1 cut(s) | 792 |
| BseXI | GCAGC | 2 cut(s) | 241, 775 |
| BsgI | GTGCAG | 1 cut(s) | 693 |
| Bsh1236I | CGCG | 1 cut(s) | 448 |
| Bsh1285I | CGRYCG | 1 cut(s) | 452 |
| BshFI | GGCC | 2 cut(s) | 323, 806 |
| BshNI | GGYRCC | 1 cut(s) | 789 |
| BsiEI | CGRYCG | 1 cut(s) | 452 |
| BsiHKAI | GWGCWC | 1 cut(s) | 81 |
| BsiHKCI | CYCGRG | 1 cut(s) | 612 |
| BsiSI | CCGG | 3 cut(s) | 226, 452, 475 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 330, 613, 888 |
| BsmAI | GTCTC | 3 cut(s) | 96, 542, 835 |
| BsmBI | CGTCTC | 2 cut(s) | 96, 542 |
| BsnI | GGCC | 2 cut(s) | 323, 806 |
| BsoBI | CYCGRG | 1 cut(s) | 612 |
| Bsp1286I | GDGCHC | 2 cut(s) | 81, 792 |
| Bsp143I | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| BspACI | CCGC | 4 cut(s) | 286, 324, 446, 584 |
| BspANI | GGCC | 2 cut(s) | 323, 806 |
| BspCNI | CTCAG | 1 cut(s) | 1102 |
| BspFNI | CGCG | 1 cut(s) | 448 |
| BspHI | TCATGA | 1 cut(s) | 748 |
| BspLI | GGNNCC | 4 cut(s) | 322, 473, 791, 1158 |
| BspMI | ACCTGC | 1 cut(s) | 170 |
| BspPI | GGATC | 4 cut(s) | 211, 217, 1151, 1164 |
| BspT107I | GGYRCC | 1 cut(s) | 789 |
| BsrDI | GCAATG | 1 cut(s) | 264 |
| BsrI | ACTGG | 1 cut(s) | 1158 |
| BssECI | CCNNGG | 2 cut(s) | 136, 317 |
| BssMI | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| BssT1I | CCWWGG | 1 cut(s) | 136 |
| Bst2UI | CCWGG | 2 cut(s) | 318, 1149 |
| Bst4CI | ACNGT | 7 cut(s) | 241, 311, 377, 829, 967, 1189, 1200 |
| Bst6I | CTCTTC | 3 cut(s) | 201, 686, 1041 |
| BstC8I | GCNNGC | 2 cut(s) | 36, 177 |
| BstDEI | CTNAG | 1 cut(s) | 1089 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 886 |
| BstF5I | GGATG | 3 cut(s) | 442, 603, 618 |
| BstFNI | CGCG | 1 cut(s) | 448 |
| BstH2I | RGCGCY | 1 cut(s) | 295 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 6 cut(s) | 48, 54, 148, 219, 225, 1159 |
| BstMAI | GTCTC | 3 cut(s) | 96, 542, 835 |
| BstMBI | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| BstMCI | CGRYCG | 1 cut(s) | 452 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 769 |
| BstNI | CCWGG | 2 cut(s) | 318, 1149 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1187, 1201 |
| BstSCI | CCNGG | 3 cut(s) | 316, 474, 1147 |
| BstSLI | GKGCMC | 1 cut(s) | 792 |
| BstUI | CGCG | 1 cut(s) | 448 |
| BstV1I | GCAGC | 2 cut(s) | 241, 775 |
| BstV2I | GAAGAC | 2 cut(s) | 371, 448 |
| BstX2I | RGATCY | 4 cut(s) | 45, 216, 222, 1156 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 467, 534 |
| BstYI | RGATCY | 4 cut(s) | 45, 216, 222, 1156 |
| BsuRI | GGCC | 2 cut(s) | 323, 806 |
| BtsCI | GGATG | 3 cut(s) | 442, 603, 618 |
| BtsI | GCAGTG | 1 cut(s) | 773 |
| BtsIMutI | CAGTG | 2 cut(s) | 773, 972 |
| BveI | ACCTGC | 1 cut(s) | 170 |
| Cac8I | GCNNGC | 2 cut(s) | 36, 177 |
| CaiI | CAGNNNCTG | 1 cut(s) | 784 |
| CciI | TCATGA | 1 cut(s) | 748 |
| CfoI | GCGC | 1 cut(s) | 294 |
| Cfr13I | GGNCC | 3 cut(s) | 321, 505, 643 |
| CseI | GACGC | 2 cut(s) | 113, 138 |
| Csp6I | GTAC | 3 cut(s) | 392, 979, 1132 |
| CviAII | CATG | 4 cut(s) | 149, 335, 749, 834 |
| CviQI | GTAC | 3 cut(s) | 392, 979, 1132 |
| DdeI | CTNAG | 1 cut(s) | 1089 |
| DpnI | GATC | 6 cut(s) | 47, 53, 147, 218, 224, 1158 |
| DpnII | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| DraIII | CACNNNGTG | 1 cut(s) | 35 |
| Eam1104I | CTCTTC | 3 cut(s) | 201, 686, 1041 |
| EarI | CTCTTC | 3 cut(s) | 201, 686, 1041 |
| EciI | GGCGGA | 1 cut(s) | 599 |
| Eco130I | CCWWGG | 1 cut(s) | 136 |
| Eco32I | GATATC | 2 cut(s) | 349, 701 |
| Eco47I | GGWCC | 2 cut(s) | 505, 643 |
| Eco57I | CTGAAG | 2 cut(s) | 1022, 1038 |
| Eco88I | CYCGRG | 1 cut(s) | 612 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 886 |
| EcoRII | CCWGG | 2 cut(s) | 316, 1147 |
| EcoRV | GATATC | 2 cut(s) | 349, 701 |
| EcoT14I | CCWWGG | 1 cut(s) | 136 |
| ErhI | CCWWGG | 1 cut(s) | 136 |
| Esp3I | CGTCTC | 2 cut(s) | 96, 542 |
| FaeI | CATG | 4 cut(s) | 152, 338, 752, 837 |
| FatI | CATG | 4 cut(s) | 148, 334, 748, 833 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 3 cut(s) | 230, 324, 764 |
| FokI | GGATG | 3 cut(s) | 449, 590, 605 |
| Fsp4HI | GCNGC | 3 cut(s) | 230, 324, 764 |
| FspBI | CTAG | 3 cut(s) | 137, 188, 633 |
| GlaI | GCGC | 1 cut(s) | 293 |
| GluI | GCNGC | 3 cut(s) | 230, 324, 764 |
| HaeII | RGCGCY | 1 cut(s) | 295 |
| HaeIII | GGCC | 2 cut(s) | 323, 806 |
| HapII | CCGG | 3 cut(s) | 226, 452, 475 |
| HgaI | GACGC | 2 cut(s) | 113, 138 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1II | CATG | 4 cut(s) | 152, 338, 752, 837 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HinfI | GANTC | 3 cut(s) | 338, 542, 719 |
| HpaII | CCGG | 3 cut(s) | 226, 452, 475 |
| HphI | GGTGA | 2 cut(s) | 223, 1120 |
| Hpy166II | GTNNAC | 1 cut(s) | 505 |
| Hpy188I | TCNGA | 8 cut(s) | 101, 427, 547, 643, 654, 876, 1182, 1207 |
| Hpy188III | TCNNGA | 6 cut(s) | 49, 82, 199, 220, 688, 749 |
| Hpy8I | GTNNAC | 1 cut(s) | 505 |
| Hpy99I | CGWCG | 1 cut(s) | 132 |
| HpyAV | CCTTC | 6 cut(s) | 33, 243, 263, 547, 1062, 1105 |
| HpyCH4III | ACNGT | 7 cut(s) | 241, 311, 377, 829, 967, 1189, 1200 |
| HpyCH4IV | ACGT | 1 cut(s) | 775 |
| HpyCH4V | TGCA | 6 cut(s) | 152, 257, 494, 674, 733, 855 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 769 |
| HpyF3I | CTNAG | 1 cut(s) | 1089 |
| HpySE526I | ACGT | 1 cut(s) | 775 |
| Hsp92II | CATG | 4 cut(s) | 152, 338, 752, 837 |
| HspAI | GCGC | 1 cut(s) | 292 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| LmnI | GCTCC | 1 cut(s) | 84 |
| Lsp1109I | GCAGC | 2 cut(s) | 241, 775 |
| LweI | GCATC | 2 cut(s) | 244, 431 |
| MaeI | CTAG | 3 cut(s) | 137, 188, 633 |
| MaeII | ACGT | 1 cut(s) | 775 |
| MaeIII | GTNAC | 1 cut(s) | 1057 |
| MalI | GATC | 6 cut(s) | 47, 53, 147, 218, 224, 1158 |
| MboI | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| MflI | RGATCY | 4 cut(s) | 45, 216, 222, 1156 |
| MhlI | GDGCHC | 2 cut(s) | 81, 792 |
| MluCI | AATT | 5 cut(s) | 71, 411, 431, 497, 902 |
| MmeI | TCCRAC | 2 cut(s) | 543, 621 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1035 |
| MseI | TTAA | 2 cut(s) | 405, 1176 |
| MspA1I | CMGCKG | 1 cut(s) | 326 |
| MspI | CCGG | 3 cut(s) | 226, 452, 475 |
| MspR9I | CCNGG | 3 cut(s) | 318, 476, 1149 |
| MvaI | CCWGG | 2 cut(s) | 318, 1149 |
| MvnI | CGCG | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 769 |
| NciI | CCSGG | 1 cut(s) | 476 |
| NdeII | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| NlaIII | CATG | 4 cut(s) | 152, 338, 752, 837 |
| NlaIV | GGNNCC | 4 cut(s) | 322, 473, 791, 1158 |
| PagI | TCATGA | 1 cut(s) | 748 |
| PaqCI | CACCTGC | 1 cut(s) | 170 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1035 |
| PfeI | GAWTC | 3 cut(s) | 338, 542, 719 |
| PfoI | TCCNGGA | 1 cut(s) | 474 |
| PkrI | GCNGC | 3 cut(s) | 231, 325, 765 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1187, 1201 |
| Psp6I | CCWGG | 2 cut(s) | 316, 1147 |
| PspGI | CCWGG | 2 cut(s) | 316, 1147 |
| PspN4I | GGNNCC | 4 cut(s) | 322, 473, 791, 1158 |
| PspPI | GGNCC | 3 cut(s) | 321, 505, 643 |
| PstNI | CAGNNNCTG | 1 cut(s) | 784 |
| PsuI | RGATCY | 4 cut(s) | 45, 216, 222, 1156 |
| RsaI | GTAC | 3 cut(s) | 393, 980, 1133 |
| RsaNI | GTAC | 3 cut(s) | 392, 979, 1132 |
| SaqAI | TTAA | 2 cut(s) | 405, 1176 |
| SatI | GCNGC | 3 cut(s) | 230, 324, 764 |
| Sau3AI | GATC | 6 cut(s) | 45, 51, 145, 216, 222, 1156 |
| Sau96I | GGNCC | 3 cut(s) | 321, 505, 643 |
| ScrFI | CCNGG | 3 cut(s) | 318, 476, 1149 |
| SduI | GDGCHC | 2 cut(s) | 81, 792 |
| SfaNI | GCATC | 2 cut(s) | 244, 431 |
| SinI | GGWCC | 2 cut(s) | 505, 643 |
| SmlI | CTYRAG | 2 cut(s) | 353, 839 |
| SmoI | CTYRAG | 2 cut(s) | 353, 839 |
| Sse9I | AATT | 5 cut(s) | 71, 411, 431, 497, 902 |
| SsiI | CCGC | 4 cut(s) | 286, 324, 446, 584 |
| SspMI | CTAG | 3 cut(s) | 137, 188, 633 |
| StyD4I | CCNGG | 3 cut(s) | 316, 474, 1147 |
| StyI | CCWWGG | 1 cut(s) | 136 |
| TaaI | ACNGT | 7 cut(s) | 241, 311, 377, 829, 967, 1189, 1200 |
| TaiI | ACGT | 1 cut(s) | 778 |
| TaqI | TCGA | 2 cut(s) | 117, 809 |
| TasI | AATT | 5 cut(s) | 71, 411, 431, 497, 902 |
| TauI | GCSGC | 1 cut(s) | 326 |
| TfiI | GAWTC | 3 cut(s) | 338, 542, 719 |
| Tru1I | TTAA | 2 cut(s) | 405, 1176 |
| Tru9I | TTAA | 2 cut(s) | 405, 1176 |
| TscAI | CASTG | 2 cut(s) | 773, 972 |
| TseI | GCWGC | 2 cut(s) | 229, 763 |
| TspDTI | ATGAA | 6 cut(s) | 219, 351, 592, 860, 939, 1085 |
| TspRI | CASTG | 2 cut(s) | 773, 972 |
| VpaK11BI | GGWCC | 2 cut(s) | 505, 643 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 886 |
| XapI | RAATTY | 2 cut(s) | 411, 902 |
| XmaJI | CCTAGG | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1035 |
| XspI | CTAG | 3 cut(s) | 137, 188, 633 |