ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 147, 209 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 169 |
| AciI | CCGC | 1 cut(s) | 772 |
| AclWI | GGATC | 1 cut(s) | 311 |
| AcsI | RAATTY | 3 cut(s) | 457, 614, 629 |
| AfaI | GTAC | 4 cut(s) | 567, 589, 648, 706 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 169, 759 |
| AgsI | TTSAA | 3 cut(s) | 334, 628, 635 |
| AjnI | CCWGG | 2 cut(s) | 260, 366 |
| AluBI | AGCT | 2 cut(s) | 17, 472 |
| AluI | AGCT | 2 cut(s) | 17, 472 |
| Alw21I | GWGCWC | 2 cut(s) | 58, 202 |
| Alw26I | GTCTC | 2 cut(s) | 367, 387 |
| AlwI | GGATC | 1 cut(s) | 311 |
| AoxI | GGCC | 3 cut(s) | 159, 356, 608 |
| ApoI | RAATTY | 3 cut(s) | 457, 614, 629 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 81 |
| AspLEI | GCGC | 1 cut(s) | 115 |
| AspS9I | GGNCC | 5 cut(s) | 160, 274, 356, 412, 437 |
| AsuC2I | CCSGG | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 1 cut(s) | 530 |
| AvaII | GGWCC | 3 cut(s) | 274, 412, 437 |
| BaeGI | GKGCMC | 1 cut(s) | 525 |
| Bbv12I | GWGCWC | 2 cut(s) | 58, 202 |
| BbvCI | CCTCAGC | 2 cut(s) | 13, 27 |
| BccI | CCATC | 2 cut(s) | 122, 171 |
| BceAI | ACGGC | 1 cut(s) | 484 |
| BciT130I | CCWGG | 2 cut(s) | 262, 368 |
| BclI | TGATCA | 1 cut(s) | 559 |
| BcnI | CCSGG | 1 cut(s) | 272 |
| BcoDI | GTCTC | 2 cut(s) | 367, 387 |
| BfaI | CTAG | 4 cut(s) | 59, 287, 585, 606 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BfoI | RGCGCY | 1 cut(s) | 116 |
| BfuAI | ACCTGC | 2 cut(s) | 147, 209 |
| BglII | AGATCT | 2 cut(s) | 283, 327 |
| Bme1390I | CCNGG | 3 cut(s) | 262, 272, 368 |
| Bme18I | GGWCC | 3 cut(s) | 274, 412, 437 |
| BmgT120I | GGNCC | 5 cut(s) | 160, 274, 356, 412, 437 |
| BmiI | GGNNCC | 2 cut(s) | 275, 413 |
| BmrFI | CCNGG | 3 cut(s) | 262, 272, 368 |
| BmrI | ACTGGG | 1 cut(s) | 252 |
| BmsI | GCATC | 2 cut(s) | 58, 163 |
| BmuI | ACTGGG | 1 cut(s) | 252 |
| BpmI | CTGGAG | 1 cut(s) | 599 |
| Bpu10I | CCTNAGC | 2 cut(s) | 13, 27 |
| BpuMI | CCSGG | 1 cut(s) | 272 |
| BsaBI | GATNNNNATC | 3 cut(s) | 252, 558, 596 |
| BsaJI | CCNNGG | 2 cut(s) | 299, 753 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 169, 759 |
| Bse1I | ACTGG | 1 cut(s) | 247 |
| Bse8I | GATNNNNATC | 3 cut(s) | 252, 558, 596 |
| BseBI | CCWGG | 2 cut(s) | 262, 368 |
| BseDI | CCNNGG | 2 cut(s) | 299, 753 |
| BseGI | GGATG | 2 cut(s) | 12, 178 |
| BseJI | GATNNNNATC | 3 cut(s) | 252, 558, 596 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 169, 759 |
| BseMII | CTCAG | 4 cut(s) | 18, 27, 77, 648 |
| BseNI | ACTGG | 1 cut(s) | 247 |
| BseRI | GAGGAG | 2 cut(s) | 44, 47 |
| BseSI | GKGCMC | 1 cut(s) | 525 |
| BseYI | CCCAGC | 1 cut(s) | 665 |
| BshFI | GGCC | 3 cut(s) | 161, 358, 610 |
| BsiHKAI | GWGCWC | 2 cut(s) | 58, 202 |
| BsiSI | CCGG | 1 cut(s) | 271 |
| BslFI | GGGAC | 3 cut(s) | 108, 287, 425 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 169, 759 |
| BsmAI | GTCTC | 2 cut(s) | 367, 387 |
| BsmBI | CGTCTC | 1 cut(s) | 387 |
| BsmFI | GGGAC | 3 cut(s) | 108, 287, 425 |
| BsnI | GGCC | 3 cut(s) | 161, 358, 610 |
| Bsp1286I | GDGCHC | 3 cut(s) | 58, 202, 525 |
| Bsp143I | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| Bsp19I | CCATGG | 1 cut(s) | 299 |
| BspACI | CCGC | 1 cut(s) | 772 |
| BspANI | GGCC | 3 cut(s) | 161, 358, 610 |
| BspCNI | CTCAG | 4 cut(s) | 19, 26, 78, 649 |
| BspLI | GGNNCC | 2 cut(s) | 275, 413 |
| BspMAI | CTGCAG | 1 cut(s) | 144 |
| BspMI | ACCTGC | 2 cut(s) | 147, 209 |
| BspPI | GGATC | 1 cut(s) | 311 |
| BspQI | GCTCTTC | 2 cut(s) | 122, 272 |
| BsrI | ACTGG | 1 cut(s) | 247 |
| BssECI | CCNNGG | 2 cut(s) | 299, 753 |
| BssMI | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| BssT1I | CCWWGG | 2 cut(s) | 299, 753 |
| Bst2UI | CCWGG | 2 cut(s) | 262, 368 |
| Bst4CI | ACNGT | 3 cut(s) | 99, 477, 534 |
| Bst6I | CTCTTC | 3 cut(s) | 122, 272, 366 |
| BstC8I | GCNNGC | 1 cut(s) | 497 |
| BstDEI | CTNAG | 4 cut(s) | 13, 27, 86, 657 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 757 |
| BstF5I | GGATG | 2 cut(s) | 12, 178 |
| BstH2I | RGCGCY | 1 cut(s) | 116 |
| BstHHI | GCGC | 1 cut(s) | 115 |
| BstKTI | GATC | 6 cut(s) | 256, 286, 306, 330, 514, 562 |
| BstMAI | GTCTC | 2 cut(s) | 367, 387 |
| BstMBI | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 23 |
| BstNI | CCWGG | 2 cut(s) | 262, 368 |
| BstSCI | CCNGG | 3 cut(s) | 260, 270, 366 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstSLI | GKGCMC | 1 cut(s) | 525 |
| BstX2I | RGATCY | 2 cut(s) | 283, 327 |
| BstYI | RGATCY | 2 cut(s) | 283, 327 |
| BsuRI | GGCC | 3 cut(s) | 161, 358, 610 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 12, 178 |
| BveI | ACCTGC | 2 cut(s) | 147, 209 |
| Cac8I | GCNNGC | 1 cut(s) | 497 |
| CfoI | GCGC | 1 cut(s) | 115 |
| Cfr13I | GGNCC | 5 cut(s) | 160, 274, 356, 412, 437 |
| CseI | GACGC | 1 cut(s) | 404 |
| Csp6I | GTAC | 4 cut(s) | 566, 588, 647, 705 |
| CviAII | CATG | 5 cut(s) | 71, 300, 434, 563, 684 |
| CviJI | RGCY | 8 cut(s) | 17, 161, 265, 358, 446, 472, 584, 610 |
| CviKI_1 | RGCY | 8 cut(s) | 17, 161, 265, 358, 446, 472, 584, 610 |
| CviQI | GTAC | 4 cut(s) | 566, 588, 647, 705 |
| DdeI | CTNAG | 4 cut(s) | 13, 27, 86, 657 |
| DpnI | GATC | 6 cut(s) | 255, 285, 305, 329, 513, 561 |
| DpnII | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| Eam1104I | CTCTTC | 3 cut(s) | 122, 272, 366 |
| EarI | CTCTTC | 3 cut(s) | 122, 272, 366 |
| Eco130I | CCWWGG | 2 cut(s) | 299, 753 |
| Eco47I | GGWCC | 3 cut(s) | 274, 412, 437 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 757 |
| EcoO109I | RGGNCCY | 2 cut(s) | 274, 412 |
| EcoRI | GAATTC | 1 cut(s) | 457 |
| EcoRII | CCWGG | 2 cut(s) | 260, 366 |
| EcoT14I | CCWWGG | 2 cut(s) | 299, 753 |
| ErhI | CCWWGG | 2 cut(s) | 299, 753 |
| Esp3I | CGTCTC | 1 cut(s) | 387 |
| FaeI | CATG | 5 cut(s) | 74, 303, 437, 566, 687 |
| FaqI | GGGAC | 3 cut(s) | 108, 287, 425 |
| FatI | CATG | 5 cut(s) | 70, 299, 433, 562, 683 |
| FauI | CCCGC | 1 cut(s) | 765 |
| FauNDI | CATATG | 1 cut(s) | 168 |
| FbaI | TGATCA | 1 cut(s) | 559 |
| FokI | GGATG | 2 cut(s) | 19, 185 |
| FspBI | CTAG | 4 cut(s) | 59, 287, 585, 606 |
| GlaI | GCGC | 1 cut(s) | 114 |
| GsaI | CCCAGC | 1 cut(s) | 669 |
| GsuI | CTGGAG | 1 cut(s) | 599 |
| HaeII | RGCGCY | 1 cut(s) | 116 |
| HaeIII | GGCC | 3 cut(s) | 161, 358, 610 |
| HapII | CCGG | 1 cut(s) | 271 |
| HgaI | GACGC | 1 cut(s) | 404 |
| HhaI | GCGC | 1 cut(s) | 115 |
| Hin1II | CATG | 5 cut(s) | 74, 303, 437, 566, 687 |
| Hin6I | GCGC | 1 cut(s) | 113 |
| HinP1I | GCGC | 1 cut(s) | 113 |
| HinfI | GANTC | 4 cut(s) | 77, 191, 290, 554 |
| HpaII | CCGG | 1 cut(s) | 271 |
| HphI | GGTGA | 1 cut(s) | 530 |
| Hpy188I | TCNGA | 6 cut(s) | 87, 283, 463, 553, 559, 658 |
| Hpy188III | TCNNGA | 5 cut(s) | 121, 287, 331, 392, 419 |
| HpyAV | CCTTC | 2 cut(s) | 425, 558 |
| HpyCH4III | ACNGT | 3 cut(s) | 99, 477, 534 |
| HpyCH4V | TGCA | 4 cut(s) | 49, 142, 236, 495 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 23 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 27, 86, 657 |
| Hsp92II | CATG | 5 cut(s) | 74, 303, 437, 566, 687 |
| HspAI | GCGC | 1 cut(s) | 113 |
| Ksp22I | TGATCA | 1 cut(s) | 559 |
| Kzo9I | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| LguI | GCTCTTC | 2 cut(s) | 122, 272 |
| LmnI | GCTCC | 1 cut(s) | 263 |
| LweI | GCATC | 2 cut(s) | 58, 163 |
| MaeI | CTAG | 4 cut(s) | 59, 287, 585, 606 |
| MalI | GATC | 6 cut(s) | 255, 285, 305, 329, 513, 561 |
| MboI | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| MboII | GAAGA | 4 cut(s) | 109, 259, 353, 358 |
| MflI | RGATCY | 2 cut(s) | 283, 327 |
| MhlI | GDGCHC | 3 cut(s) | 58, 202, 525 |
| MluCI | AATT | 6 cut(s) | 21, 81, 457, 614, 629, 732 |
| MlyI | GAGTC | 1 cut(s) | 284 |
| MmeI | TCCRAC | 1 cut(s) | 459 |
| MnlI | CCTC | 8 cut(s) | 22, 22, 25, 369, 375, 574, 681, 776 |
| MroXI | GAANNNNTTC | 1 cut(s) | 81 |
| MseI | TTAA | 2 cut(s) | 135, 321 |
| MslI | CAYNNNNRTG | 1 cut(s) | 171 |
| MspA1I | CMGCKG | 1 cut(s) | 17 |
| MspI | CCGG | 1 cut(s) | 271 |
| MspR9I | CCNGG | 3 cut(s) | 262, 272, 368 |
| MvaI | CCWGG | 2 cut(s) | 262, 368 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 23 |
| NciI | CCSGG | 1 cut(s) | 272 |
| NcoI | CCATGG | 1 cut(s) | 299 |
| NdeI | CATATG | 1 cut(s) | 168 |
| NdeII | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| NlaIII | CATG | 5 cut(s) | 74, 303, 437, 566, 687 |
| NlaIV | GGNNCC | 2 cut(s) | 275, 413 |
| PciSI | GCTCTTC | 2 cut(s) | 122, 272 |
| PdmI | GAANNNNTTC | 1 cut(s) | 81 |
| PfeI | GAWTC | 3 cut(s) | 77, 191, 554 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 169 |
| PfoI | TCCNGGA | 1 cut(s) | 270 |
| PleI | GAGTC | 1 cut(s) | 284 |
| PpsI | GAGTC | 1 cut(s) | 284 |
| PpuMI | RGGWCCY | 2 cut(s) | 274, 412 |
| Psp5II | RGGWCCY | 2 cut(s) | 274, 412 |
| Psp6I | CCWGG | 2 cut(s) | 260, 366 |
| PspFI | CCCAGC | 1 cut(s) | 665 |
| PspGI | CCWGG | 2 cut(s) | 260, 366 |
| PspN4I | GGNNCC | 2 cut(s) | 275, 413 |
| PspPI | GGNCC | 5 cut(s) | 160, 274, 356, 412, 437 |
| PspPPI | RGGWCCY | 2 cut(s) | 274, 412 |
| PstI | CTGCAG | 1 cut(s) | 144 |
| PsuI | RGATCY | 2 cut(s) | 283, 327 |
| PvuII | CAGCTG | 1 cut(s) | 17 |
| RsaI | GTAC | 4 cut(s) | 567, 589, 648, 706 |
| RsaNI | GTAC | 4 cut(s) | 566, 588, 647, 705 |
| RseI | CAYNNNNRTG | 1 cut(s) | 171 |
| SapI | GCTCTTC | 2 cut(s) | 122, 272 |
| SaqAI | TTAA | 2 cut(s) | 135, 321 |
| Sau3AI | GATC | 6 cut(s) | 253, 283, 303, 327, 511, 559 |
| Sau96I | GGNCC | 5 cut(s) | 160, 274, 356, 412, 437 |
| SchI | GAGTC | 1 cut(s) | 284 |
| ScrFI | CCNGG | 3 cut(s) | 262, 272, 368 |
| SduI | GDGCHC | 3 cut(s) | 58, 202, 525 |
| SfaNI | GCATC | 2 cut(s) | 58, 163 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SinI | GGWCC | 3 cut(s) | 274, 412, 437 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 171 |
| Sse9I | AATT | 6 cut(s) | 21, 81, 457, 614, 629, 732 |
| SsiI | CCGC | 1 cut(s) | 772 |
| SspMI | CTAG | 4 cut(s) | 59, 287, 585, 606 |
| StyD4I | CCNGG | 3 cut(s) | 260, 270, 366 |
| StyI | CCWWGG | 2 cut(s) | 299, 753 |
| TaaI | ACNGT | 3 cut(s) | 99, 477, 534 |
| TaqI | TCGA | 1 cut(s) | 391 |
| TasI | AATT | 6 cut(s) | 21, 81, 457, 614, 629, 732 |
| TfiI | GAWTC | 3 cut(s) | 77, 191, 554 |
| Tru1I | TTAA | 2 cut(s) | 135, 321 |
| Tru9I | TTAA | 2 cut(s) | 135, 321 |
| TspDTI | ATGAA | 2 cut(s) | 422, 693 |
| TspGWI | ACGGA | 1 cut(s) | 707 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 169 |
| VpaK11BI | GGWCC | 3 cut(s) | 274, 412, 437 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 757 |
| XapI | RAATTY | 3 cut(s) | 457, 614, 629 |
| XbaI | TCTAGA | 1 cut(s) | 286 |
| XmnI | GAANNNNTTC | 1 cut(s) | 81 |
| XspI | CTAG | 4 cut(s) | 59, 287, 585, 606 |