ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 159, 238 |
| AccI | GTMKAC | 1 cut(s) | 408 |
| AciI | CCGC | 4 cut(s) | 197, 200, 302, 417 |
| AclWI | GGATC | 1 cut(s) | 334 |
| AcsI | RAATTY | 1 cut(s) | 79 |
| AdeI | CACNNNGTG | 1 cut(s) | 173 |
| AfaI | GTAC | 1 cut(s) | 338 |
| AgeI | ACCGGT | 1 cut(s) | 264 |
| AluBI | AGCT | 1 cut(s) | 450 |
| AluI | AGCT | 1 cut(s) | 450 |
| Alw21I | GWGCWC | 1 cut(s) | 212 |
| Alw26I | GTCTC | 1 cut(s) | 80 |
| AlwI | GGATC | 1 cut(s) | 334 |
| AoxI | GGCC | 1 cut(s) | 439 |
| ApoI | RAATTY | 1 cut(s) | 79 |
| AsiGI | ACCGGT | 1 cut(s) | 264 |
| AspA2I | CCTAGG | 1 cut(s) | 22 |
| AspS9I | GGNCC | 1 cut(s) | 59 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| AvrII | CCTAGG | 1 cut(s) | 22 |
| BanI | GGYRCC | 2 cut(s) | 159, 238 |
| Bbv12I | GWGCWC | 1 cut(s) | 212 |
| BccI | CCATC | 1 cut(s) | 281 |
| BceAI | ACGGC | 1 cut(s) | 95 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 122, 156 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 80 |
| BfaI | CTAG | 5 cut(s) | 23, 47, 150, 312, 366 |
| BisI | GCNGC | 2 cut(s) | 200, 303 |
| BlnI | CCTAGG | 1 cut(s) | 22 |
| BlsI | GCNGC | 2 cut(s) | 201, 304 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 1 cut(s) | 59 |
| BmiI | GGNNCC | 3 cut(s) | 60, 161, 240 |
| BmrI | ACTGGG | 1 cut(s) | 456 |
| BmsI | GCATC | 3 cut(s) | 7, 410, 447 |
| BmuI | ACTGGG | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 1 cut(s) | 22 |
| BsaWI | WCCGGW | 1 cut(s) | 264 |
| Bse118I | RCCGGY | 1 cut(s) | 264 |
| Bse1I | ACTGG | 1 cut(s) | 462 |
| BseDI | CCNNGG | 1 cut(s) | 22 |
| BseGI | GGATG | 2 cut(s) | 322, 425 |
| BseNI | ACTGG | 1 cut(s) | 462 |
| BshFI | GGCC | 1 cut(s) | 441 |
| BshNI | GGYRCC | 2 cut(s) | 159, 238 |
| BshTI | ACCGGT | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 1 cut(s) | 212 |
| BsiSI | CCGG | 2 cut(s) | 265, 442 |
| BslFI | GGGAC | 1 cut(s) | 72 |
| BsmAI | GTCTC | 1 cut(s) | 80 |
| BsmFI | GGGAC | 1 cut(s) | 72 |
| BsnI | GGCC | 1 cut(s) | 441 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| Bsp143I | GATC | 2 cut(s) | 181, 326 |
| BspACI | CCGC | 4 cut(s) | 197, 200, 302, 417 |
| BspANI | GGCC | 1 cut(s) | 441 |
| BspLI | GGNNCC | 3 cut(s) | 60, 161, 240 |
| BspPI | GGATC | 1 cut(s) | 334 |
| BspQI | GCTCTTC | 1 cut(s) | 440 |
| BspT107I | GGYRCC | 2 cut(s) | 159, 238 |
| BsrFI | RCCGGY | 1 cut(s) | 264 |
| BsrI | ACTGG | 1 cut(s) | 462 |
| BssAI | RCCGGY | 1 cut(s) | 264 |
| BssECI | CCNNGG | 1 cut(s) | 22 |
| BssMI | GATC | 2 cut(s) | 181, 326 |
| BssT1I | CCWWGG | 1 cut(s) | 22 |
| Bst6I | CTCTTC | 2 cut(s) | 385, 440 |
| BstC8I | GCNNGC | 3 cut(s) | 119, 204, 208 |
| BstF5I | GGATG | 2 cut(s) | 322, 425 |
| BstKTI | GATC | 2 cut(s) | 184, 329 |
| BstMAI | GTCTC | 1 cut(s) | 80 |
| BstMBI | GATC | 2 cut(s) | 181, 326 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 308, 447 |
| BstX2I | RGATCY | 1 cut(s) | 326 |
| BstYI | RGATCY | 1 cut(s) | 326 |
| BsuRI | GGCC | 1 cut(s) | 441 |
| BtsCI | GGATG | 2 cut(s) | 322, 425 |
| Cac8I | GCNNGC | 3 cut(s) | 119, 204, 208 |
| Cfr10I | RCCGGY | 1 cut(s) | 264 |
| Cfr13I | GGNCC | 1 cut(s) | 59 |
| Csp6I | GTAC | 1 cut(s) | 337 |
| CspAI | ACCGGT | 1 cut(s) | 264 |
| CviAII | CATG | 3 cut(s) | 146, 185, 306 |
| CviJI | RGCY | 7 cut(s) | 9, 110, 260, 311, 397, 441, 450 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 110, 260, 311, 397, 441, 450 |
| CviQI | GTAC | 1 cut(s) | 337 |
| DpnI | GATC | 2 cut(s) | 183, 328 |
| DpnII | GATC | 2 cut(s) | 181, 326 |
| DraIII | CACNNNGTG | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 2 cut(s) | 385, 440 |
| EarI | CTCTTC | 2 cut(s) | 385, 440 |
| Eco130I | CCWWGG | 1 cut(s) | 22 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| EcoT14I | CCWWGG | 1 cut(s) | 22 |
| ErhI | CCWWGG | 1 cut(s) | 22 |
| FaeI | CATG | 3 cut(s) | 149, 188, 309 |
| FaiI | YATR | 9 cut(s) | 30, 137, 139, 141, 147, 186, 307, 335, 363 |
| FaqI | GGGAC | 1 cut(s) | 72 |
| FatI | CATG | 3 cut(s) | 145, 184, 305 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FblI | GTMKAC | 1 cut(s) | 408 |
| Fnu4HI | GCNGC | 2 cut(s) | 200, 303 |
| FokI | GGATG | 2 cut(s) | 329, 432 |
| Fsp4HI | GCNGC | 2 cut(s) | 200, 303 |
| FspBI | CTAG | 5 cut(s) | 23, 47, 150, 312, 366 |
| GluI | GCNGC | 2 cut(s) | 200, 303 |
| HaeIII | GGCC | 1 cut(s) | 441 |
| HapII | CCGG | 2 cut(s) | 265, 442 |
| Hin1II | CATG | 3 cut(s) | 149, 188, 309 |
| HinfI | GANTC | 1 cut(s) | 247 |
| HpaII | CCGG | 2 cut(s) | 265, 442 |
| Hpy166II | GTNNAC | 1 cut(s) | 409 |
| Hpy188I | TCNGA | 1 cut(s) | 427 |
| Hpy188III | TCNNGA | 1 cut(s) | 85 |
| Hpy8I | GTNNAC | 1 cut(s) | 409 |
| HpyAV | CCTTC | 2 cut(s) | 224, 229 |
| HpyCH4V | TGCA | 1 cut(s) | 117 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 308, 447 |
| Hsp92II | CATG | 3 cut(s) | 149, 188, 309 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 181, 326 |
| LguI | GCTCTTC | 1 cut(s) | 440 |
| LpnPI | CCDG | 2 cut(s) | 278, 455 |
| LweI | GCATC | 3 cut(s) | 7, 410, 447 |
| MaeI | CTAG | 5 cut(s) | 23, 47, 150, 312, 366 |
| MaeIII | GTNAC | 2 cut(s) | 173, 267 |
| MalI | GATC | 2 cut(s) | 183, 328 |
| MboI | GATC | 2 cut(s) | 181, 326 |
| MboII | GAAGA | 2 cut(s) | 402, 457 |
| MfeI | CAATTG | 1 cut(s) | 412 |
| MflI | RGATCY | 1 cut(s) | 326 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MluCI | AATT | 3 cut(s) | 79, 373, 412 |
| MnlI | CCTC | 3 cut(s) | 72, 250, 386 |
| MseI | TTAA | 4 cut(s) | 42, 155, 401, 466 |
| MspI | CCGG | 2 cut(s) | 265, 442 |
| MunI | CAATTG | 1 cut(s) | 412 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 308, 447 |
| NdeII | GATC | 2 cut(s) | 181, 326 |
| NlaIII | CATG | 3 cut(s) | 149, 188, 309 |
| NlaIV | GGNNCC | 3 cut(s) | 60, 161, 240 |
| NmuCI | GTSAC | 1 cut(s) | 173 |
| PciSI | GCTCTTC | 1 cut(s) | 440 |
| PfeI | GAWTC | 1 cut(s) | 247 |
| PinAI | ACCGGT | 1 cut(s) | 264 |
| PkrI | GCNGC | 2 cut(s) | 201, 304 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| PspN4I | GGNNCC | 3 cut(s) | 60, 161, 240 |
| PspPI | GGNCC | 1 cut(s) | 59 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 338 |
| RsaNI | GTAC | 1 cut(s) | 337 |
| SapI | GCTCTTC | 1 cut(s) | 440 |
| SaqAI | TTAA | 4 cut(s) | 42, 155, 401, 466 |
| SatI | GCNGC | 2 cut(s) | 200, 303 |
| Sau3AI | GATC | 2 cut(s) | 181, 326 |
| Sau96I | GGNCC | 1 cut(s) | 59 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SetI | ASST | 5 cut(s) | 64, 155, 165, 371, 452 |
| SfaNI | GCATC | 3 cut(s) | 7, 410, 447 |
| SinI | GGWCC | 1 cut(s) | 59 |
| Sse9I | AATT | 3 cut(s) | 79, 373, 412 |
| SsiI | CCGC | 4 cut(s) | 197, 200, 302, 417 |
| SspMI | CTAG | 5 cut(s) | 23, 47, 150, 312, 366 |
| StyI | CCWWGG | 1 cut(s) | 22 |
| TaqI | TCGA | 3 cut(s) | 84, 250, 279 |
| TasI | AATT | 3 cut(s) | 79, 373, 412 |
| TauI | GCSGC | 2 cut(s) | 202, 305 |
| TfiI | GAWTC | 1 cut(s) | 247 |
| Tru1I | TTAA | 4 cut(s) | 42, 155, 401, 466 |
| Tru9I | TTAA | 4 cut(s) | 42, 155, 401, 466 |
| TseFI | GTSAC | 1 cut(s) | 173 |
| Tsp45I | GTSAC | 1 cut(s) | 173 |
| TspGWI | ACGGA | 1 cut(s) | 86 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| XapI | RAATTY | 1 cut(s) | 79 |
| XmaJI | CCTAGG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 1 cut(s) | 408 |
| XspI | CTAG | 5 cut(s) | 23, 47, 150, 312, 366 |