ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 787 |
| Acc36I | ACCTGC | 1 cut(s) | 153 |
| Acc65I | GGTACC | 1 cut(s) | 1047 |
| AccB1I | GGYRCC | 1 cut(s) | 1047 |
| AciI | CCGC | 3 cut(s) | 1034, 1656, 1664 |
| AclWI | GGATC | 4 cut(s) | 94, 255, 444, 604 |
| AcoI | YGGCCR | 1 cut(s) | 1513 |
| AcsI | RAATTY | 3 cut(s) | 384, 525, 1594 |
| AfaI | GTAC | 5 cut(s) | 724, 797, 969, 1049, 1543 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 310, 579, 582 |
| AjnI | CCWGG | 2 cut(s) | 648, 698 |
| Alw21I | GWGCWC | 3 cut(s) | 420, 1073, 1193 |
| Alw26I | GTCTC | 2 cut(s) | 289, 1358 |
| AlwI | GGATC | 4 cut(s) | 94, 255, 444, 604 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 185, 376, 605 |
| AoxI | GGCC | 5 cut(s) | 702, 1344, 1513, 1653, 1837 |
| ApeKI | GCWGC | 8 cut(s) | 196, 481, 1553, 1570, 1580, 1589, 1667, 1670 |
| ApoI | RAATTY | 3 cut(s) | 384, 525, 1594 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 194, 226 |
| AseI | ATTAAT | 1 cut(s) | 519 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1062, 1717 |
| Asp718I | GGTACC | 1 cut(s) | 1047 |
| AspS9I | GGNCC | 5 cut(s) | 129, 265, 702, 780, 1837 |
| AsuHPI | GGTGA | 1 cut(s) | 1743 |
| AvaII | GGWCC | 3 cut(s) | 129, 265, 780 |
| BalI | TGGCCA | 1 cut(s) | 1515 |
| BanI | GGYRCC | 1 cut(s) | 1047 |
| BanII | GRGCYC | 2 cut(s) | 420, 1174 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 951, 983 |
| BauI | CACGAG | 1 cut(s) | 1557 |
| BbsI | GAAGAC | 2 cut(s) | 1188, 1770 |
| Bbv12I | GWGCWC | 3 cut(s) | 420, 1073, 1193 |
| BbvCI | CCTCAGC | 2 cut(s) | 1386, 1659 |
| BbvI | GCAGC | 8 cut(s) | 183, 493, 1565, 1576, 1582, 1592, 1654, 1657 |
| BccI | CCATC | 3 cut(s) | 484, 1195, 1348 |
| BceAI | ACGGC | 1 cut(s) | 689 |
| BciT130I | CCWGG | 2 cut(s) | 650, 700 |
| BciVI | GTATCC | 1 cut(s) | 115 |
| BcoDI | GTCTC | 2 cut(s) | 289, 1358 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfmI | CTRYAG | 3 cut(s) | 377, 1076, 1326 |
| BfuAI | ACCTGC | 1 cut(s) | 153 |
| BfuI | GTATCC | 1 cut(s) | 115 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1661 |
| BmcAI | AGTACT | 2 cut(s) | 724, 797 |
| Bme1390I | CCNGG | 2 cut(s) | 650, 700 |
| Bme18I | GGWCC | 3 cut(s) | 129, 265, 780 |
| BmgT120I | GGNCC | 5 cut(s) | 129, 265, 702, 780, 1837 |
| BmiI | GGNNCC | 3 cut(s) | 131, 1049, 1720 |
| BmrFI | CCNGG | 2 cut(s) | 650, 700 |
| BmsI | GCATC | 5 cut(s) | 290, 391, 1021, 1157, 1567 |
| BpiI | GAAGAC | 2 cut(s) | 1188, 1770 |
| BpmI | CTGGAG | 2 cut(s) | 39, 872 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1386, 1659 |
| BpuEI | CTTGAG | 3 cut(s) | 640, 1207, 1765 |
| BsaJI | CCNNGG | 3 cut(s) | 504, 648, 699 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1598, 1628 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 310, 579, 582 |
| Bse1I | ACTGG | 6 cut(s) | 179, 268, 777, 855, 1302, 1347 |
| Bse3DI | GCAATG | 2 cut(s) | 348, 1308 |
| BseBI | CCWGG | 2 cut(s) | 650, 700 |
| BseDI | CCNNGG | 3 cut(s) | 504, 648, 699 |
| BseGI | GGATG | 1 cut(s) | 1582 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 310, 579, 582 |
| BseMI | GCAATG | 2 cut(s) | 348, 1308 |
| BseNI | ACTGG | 6 cut(s) | 179, 268, 777, 855, 1302, 1347 |
| BseRI | GAGGAG | 1 cut(s) | 595 |
| BseXI | GCAGC | 8 cut(s) | 183, 493, 1565, 1576, 1582, 1592, 1654, 1657 |
| BsgI | GTGCAG | 1 cut(s) | 1652 |
| BshFI | GGCC | 5 cut(s) | 704, 1346, 1515, 1655, 1839 |
| BshNI | GGYRCC | 1 cut(s) | 1047 |
| BsiHKAI | GWGCWC | 3 cut(s) | 420, 1073, 1193 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 310, 579, 582 |
| BsmAI | GTCTC | 2 cut(s) | 289, 1358 |
| BsmBI | CGTCTC | 1 cut(s) | 289 |
| BsnI | GGCC | 5 cut(s) | 704, 1346, 1515, 1655, 1839 |
| Bsp1286I | GDGCHC | 4 cut(s) | 420, 1073, 1174, 1193 |
| Bsp143I | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| BspACI | CCGC | 3 cut(s) | 1034, 1656, 1664 |
| BspANI | GGCC | 5 cut(s) | 704, 1346, 1515, 1655, 1839 |
| BspLI | GGNNCC | 3 cut(s) | 131, 1049, 1720 |
| BspMAI | CTGCAG | 3 cut(s) | 381, 1080, 1330 |
| BspMI | ACCTGC | 1 cut(s) | 153 |
| BspPI | GGATC | 4 cut(s) | 94, 255, 444, 604 |
| BspQI | GCTCTTC | 1 cut(s) | 975 |
| BspT107I | GGYRCC | 1 cut(s) | 1047 |
| BsrDI | GCAATG | 2 cut(s) | 348, 1308 |
| BsrI | ACTGG | 6 cut(s) | 179, 268, 777, 855, 1302, 1347 |
| BssECI | CCNNGG | 3 cut(s) | 504, 648, 699 |
| BssMI | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| BssSI | CACGAG | 1 cut(s) | 1557 |
| BssT1I | CCWWGG | 1 cut(s) | 504 |
| Bst2BI | CACGAG | 1 cut(s) | 1557 |
| Bst2UI | CCWGG | 2 cut(s) | 650, 700 |
| Bst4CI | ACNGT | 3 cut(s) | 722, 967, 972 |
| Bst6I | CTCTTC | 5 cut(s) | 248, 287, 354, 922, 975 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 347, 884, 1031, 1589 |
| BstC8I | GCNNGC | 3 cut(s) | 588, 1164, 1256 |
| BstF5I | GGATG | 1 cut(s) | 1582 |
| BstKTI | GATC | 6 cut(s) | 89, 250, 439, 612, 838, 1642 |
| BstMAI | GTCTC | 2 cut(s) | 289, 1358 |
| BstMBI | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| BstNI | CCWGG | 2 cut(s) | 650, 700 |
| BstNSI | RCATGY | 1 cut(s) | 590 |
| BstSCI | CCNGG | 2 cut(s) | 648, 698 |
| BstSFI | CTRYAG | 3 cut(s) | 377, 1076, 1326 |
| BstV1I | GCAGC | 8 cut(s) | 183, 493, 1565, 1576, 1582, 1592, 1654, 1657 |
| BstV2I | GAAGAC | 2 cut(s) | 1188, 1770 |
| BstX2I | RGATCY | 2 cut(s) | 247, 609 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1354 |
| BstYI | RGATCY | 2 cut(s) | 247, 609 |
| BsuI | GTATCC | 1 cut(s) | 115 |
| BsuRI | GGCC | 5 cut(s) | 704, 1346, 1515, 1655, 1839 |
| BtgZI | GCGATG | 1 cut(s) | 1366 |
| BtsCI | GGATG | 1 cut(s) | 1582 |
| BtsI | GCAGTG | 2 cut(s) | 1073, 1335 |
| BtsIMutI | CAGTG | 5 cut(s) | 153, 848, 1073, 1335, 1649 |
| BveI | ACCTGC | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 3 cut(s) | 588, 1164, 1256 |
| CaiI | CAGNNNCTG | 3 cut(s) | 185, 376, 605 |
| Cfr13I | GGNCC | 5 cut(s) | 129, 265, 702, 780, 1837 |
| CseI | GACGC | 2 cut(s) | 611, 1463 |
| Csp6I | GTAC | 5 cut(s) | 723, 796, 968, 1048, 1542 |
| CviAII | CATG | 5 cut(s) | 450, 587, 1125, 1175, 1804 |
| CviQI | GTAC | 5 cut(s) | 723, 796, 968, 1048, 1542 |
| DpnI | GATC | 6 cut(s) | 88, 249, 438, 611, 837, 1641 |
| DpnII | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 787 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 787 |
| EaeI | YGGCCR | 1 cut(s) | 1513 |
| Eam1104I | CTCTTC | 5 cut(s) | 248, 287, 354, 922, 975 |
| EarI | CTCTTC | 5 cut(s) | 248, 287, 354, 922, 975 |
| Ecl136II | GAGCTC | 1 cut(s) | 418 |
| Eco130I | CCWWGG | 1 cut(s) | 504 |
| Eco24I | GRGCYC | 2 cut(s) | 420, 1174 |
| Eco47I | GGWCC | 3 cut(s) | 129, 265, 780 |
| Eco53kI | GAGCTC | 1 cut(s) | 418 |
| EcoICRI | GAGCTC | 1 cut(s) | 418 |
| EcoO109I | RGGNCCY | 1 cut(s) | 129 |
| EcoRII | CCWGG | 2 cut(s) | 648, 698 |
| EcoT14I | CCWWGG | 1 cut(s) | 504 |
| EcoT38I | GRGCYC | 2 cut(s) | 420, 1174 |
| ErhI | CCWWGG | 1 cut(s) | 504 |
| Esp3I | CGTCTC | 1 cut(s) | 289 |
| FaeI | CATG | 5 cut(s) | 453, 590, 1128, 1178, 1807 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 13, 45 |
| FatI | CATG | 5 cut(s) | 449, 586, 1124, 1174, 1803 |
| FauNDI | CATATG | 1 cut(s) | 1093 |
| FokI | GGATG | 1 cut(s) | 1589 |
| FriOI | GRGCYC | 2 cut(s) | 420, 1174 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GsuI | CTGGAG | 2 cut(s) | 39, 872 |
| HaeIII | GGCC | 5 cut(s) | 704, 1346, 1515, 1655, 1839 |
| HgaI | GACGC | 2 cut(s) | 611, 1463 |
| Hin1II | CATG | 5 cut(s) | 453, 590, 1128, 1178, 1807 |
| HincII | GTYRAC | 1 cut(s) | 425 |
| HindII | GTYRAC | 1 cut(s) | 425 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HphI | GGTGA | 1 cut(s) | 1743 |
| Hpy166II | GTNNAC | 5 cut(s) | 425, 562, 913, 1544, 1751 |
| Hpy188III | TCNNGA | 5 cut(s) | 84, 413, 434, 440, 613 |
| Hpy8I | GTNNAC | 5 cut(s) | 425, 562, 913, 1544, 1751 |
| Hpy99I | CGWCG | 1 cut(s) | 1457 |
| HpyAV | CCTTC | 5 cut(s) | 301, 1277, 1336, 1645, 1828 |
| HpyCH4III | ACNGT | 3 cut(s) | 722, 967, 972 |
| Hsp92II | CATG | 5 cut(s) | 453, 590, 1128, 1178, 1807 |
| KpnI | GGTACC | 1 cut(s) | 1051 |
| Kzo9I | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| LguI | GCTCTTC | 1 cut(s) | 975 |
| LmnI | GCTCC | 4 cut(s) | 423, 771, 823, 1306 |
| Lsp1109I | GCAGC | 8 cut(s) | 183, 493, 1565, 1576, 1582, 1592, 1654, 1657 |
| LweI | GCATC | 5 cut(s) | 290, 391, 1021, 1157, 1567 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeIII | GTNAC | 3 cut(s) | 151, 893, 1798 |
| MalI | GATC | 6 cut(s) | 88, 249, 438, 611, 837, 1641 |
| MboI | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| MfeI | CAATTG | 5 cut(s) | 236, 734, 905, 1013, 1217 |
| MflI | RGATCY | 2 cut(s) | 247, 609 |
| MhlI | GDGCHC | 4 cut(s) | 420, 1073, 1174, 1193 |
| MlsI | TGGCCA | 1 cut(s) | 1515 |
| MluNI | TGGCCA | 1 cut(s) | 1515 |
| MlyI | GAGTC | 7 cut(s) | 293, 371, 557, 602, 865, 1018, 1772 |
| MmeI | TCCRAC | 3 cut(s) | 793, 801, 1299 |
| Mox20I | TGGCCA | 1 cut(s) | 1515 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1062, 1717 |
| MscI | TGGCCA | 1 cut(s) | 1515 |
| MseI | TTAA | 8 cut(s) | 272, 519, 843, 974, 1416, 1520, 1616, 1625 |
| Msp20I | TGGCCA | 1 cut(s) | 1515 |
| MspA1I | CMGCKG | 4 cut(s) | 1198, 1469, 1573, 1658 |
| MspR9I | CCNGG | 2 cut(s) | 650, 700 |
| MunI | CAATTG | 5 cut(s) | 236, 734, 905, 1013, 1217 |
| MvaI | CCWGG | 2 cut(s) | 650, 700 |
| NdeI | CATATG | 1 cut(s) | 1093 |
| NdeII | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| NlaIII | CATG | 5 cut(s) | 453, 590, 1128, 1178, 1807 |
| NlaIV | GGNNCC | 3 cut(s) | 131, 1049, 1720 |
| NmuCI | GTSAC | 2 cut(s) | 151, 1798 |
| NspI | RCATGY | 1 cut(s) | 590 |
| PaeI | GCATGC | 1 cut(s) | 590 |
| PciSI | GCTCTTC | 1 cut(s) | 975 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1062, 1717 |
| PfeI | GAWTC | 8 cut(s) | 221, 455, 494, 689, 761, 1106, 1121, 1289 |
| PleI | GAGTC | 7 cut(s) | 292, 370, 557, 601, 864, 1017, 1772 |
| PpsI | GAGTC | 7 cut(s) | 292, 370, 557, 601, 864, 1017, 1772 |
| PpuMI | RGGWCCY | 1 cut(s) | 129 |
| PshBI | ATTAAT | 1 cut(s) | 519 |
| Psp124BI | GAGCTC | 1 cut(s) | 420 |
| Psp5II | RGGWCCY | 1 cut(s) | 129 |
| Psp6I | CCWGG | 2 cut(s) | 648, 698 |
| PspGI | CCWGG | 2 cut(s) | 648, 698 |
| PspN4I | GGNNCC | 3 cut(s) | 131, 1049, 1720 |
| PspPI | GGNCC | 5 cut(s) | 129, 265, 702, 780, 1837 |
| PspPPI | RGGWCCY | 1 cut(s) | 129 |
| PstI | CTGCAG | 3 cut(s) | 381, 1080, 1330 |
| PstNI | CAGNNNCTG | 3 cut(s) | 185, 376, 605 |
| PsuI | RGATCY | 2 cut(s) | 247, 609 |
| PvuII | CAGCTG | 3 cut(s) | 1198, 1469, 1573 |
| RsaI | GTAC | 5 cut(s) | 724, 797, 969, 1049, 1543 |
| RsaNI | GTAC | 5 cut(s) | 723, 796, 968, 1048, 1542 |
| SacI | GAGCTC | 1 cut(s) | 420 |
| SapI | GCTCTTC | 1 cut(s) | 975 |
| SaqAI | TTAA | 8 cut(s) | 272, 519, 843, 974, 1416, 1520, 1616, 1625 |
| Sau3AI | GATC | 6 cut(s) | 86, 247, 436, 609, 835, 1639 |
| Sau96I | GGNCC | 5 cut(s) | 129, 265, 702, 780, 1837 |
| ScaI | AGTACT | 2 cut(s) | 724, 797 |
| SchI | GAGTC | 7 cut(s) | 293, 371, 557, 602, 865, 1018, 1772 |
| ScrFI | CCNGG | 2 cut(s) | 650, 700 |
| SduI | GDGCHC | 4 cut(s) | 420, 1073, 1174, 1193 |
| SfaNI | GCATC | 5 cut(s) | 290, 391, 1021, 1157, 1567 |
| SfcI | CTRYAG | 3 cut(s) | 377, 1076, 1326 |
| SinI | GGWCC | 3 cut(s) | 129, 265, 780 |
| SmlI | CTYRAG | 3 cut(s) | 619, 1186, 1744 |
| SmoI | CTYRAG | 3 cut(s) | 619, 1186, 1744 |
| SphI | GCATGC | 1 cut(s) | 590 |
| SsiI | CCGC | 3 cut(s) | 1034, 1656, 1664 |
| SspMI | CTAG | 1 cut(s) | 126 |
| SstI | GAGCTC | 1 cut(s) | 420 |
| StyD4I | CCNGG | 2 cut(s) | 648, 698 |
| StyI | CCWWGG | 1 cut(s) | 504 |
| TaaI | ACNGT | 3 cut(s) | 722, 967, 972 |
| TaqI | TCGA | 2 cut(s) | 439, 488 |
| TatI | WGTACW | 4 cut(s) | 722, 795, 967, 1541 |
| TauI | GCSGC | 3 cut(s) | 1037, 1658, 1667 |
| TfiI | GAWTC | 8 cut(s) | 221, 455, 494, 689, 761, 1106, 1121, 1289 |
| Tru1I | TTAA | 8 cut(s) | 272, 519, 843, 974, 1416, 1520, 1616, 1625 |
| Tru9I | TTAA | 8 cut(s) | 272, 519, 843, 974, 1416, 1520, 1616, 1625 |
| TscAI | CASTG | 5 cut(s) | 160, 855, 1080, 1335, 1649 |
| TseFI | GTSAC | 2 cut(s) | 151, 1798 |
| TseI | GCWGC | 8 cut(s) | 196, 481, 1553, 1570, 1580, 1589, 1667, 1670 |
| Tsp45I | GTSAC | 2 cut(s) | 151, 1798 |
| TspDTI | ATGAA | 4 cut(s) | 537, 972, 1113, 1410 |
| TspGWI | ACGGA | 1 cut(s) | 410 |
| TspRI | CASTG | 5 cut(s) | 160, 855, 1080, 1335, 1649 |
| VpaK11BI | GGWCC | 3 cut(s) | 129, 265, 780 |
| VspI | ATTAAT | 1 cut(s) | 519 |
| XapI | RAATTY | 3 cut(s) | 384, 525, 1594 |
| XceI | RCATGY | 1 cut(s) | 590 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1062, 1717 |
| XspI | CTAG | 1 cut(s) | 126 |
| ZrmI | AGTACT | 2 cut(s) | 724, 797 |