ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 186 |
| Acc36I | ACCTGC | 1 cut(s) | 186 |
| AccIII | TCCGGA | 1 cut(s) | 871 |
| AciI | CCGC | 1 cut(s) | 592 |
| AclWI | GGATC | 1 cut(s) | 365 |
| AcsI | RAATTY | 2 cut(s) | 401, 982 |
| AcuI | CTGAAG | 1 cut(s) | 954 |
| AdeI | CACNNNGTG | 1 cut(s) | 257 |
| AfaI | GTAC | 3 cut(s) | 279, 300, 812 |
| AflIII | ACRYGT | 1 cut(s) | 708 |
| AjnI | CCWGG | 3 cut(s) | 209, 285, 865 |
| AluBI | AGCT | 8 cut(s) | 104, 152, 390, 439, 496, 524, 602, 761 |
| AluI | AGCT | 8 cut(s) | 104, 152, 390, 439, 496, 524, 602, 761 |
| Alw21I | GWGCWC | 1 cut(s) | 203 |
| Alw26I | GTCTC | 2 cut(s) | 164, 526 |
| Alw44I | GTGCAC | 1 cut(s) | 199 |
| AlwI | GGATC | 1 cut(s) | 365 |
| Aor13HI | TCCGGA | 1 cut(s) | 871 |
| AoxI | GGCC | 4 cut(s) | 62, 142, 314, 1043 |
| ApaLI | GTGCAC | 1 cut(s) | 199 |
| ApeKI | GCWGC | 1 cut(s) | 599 |
| ApoI | RAATTY | 2 cut(s) | 401, 982 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 762, 939 |
| AspS9I | GGNCC | 4 cut(s) | 62, 143, 315, 869 |
| AsuHPI | GGTGA | 3 cut(s) | 167, 250, 925 |
| AvaII | GGWCC | 1 cut(s) | 869 |
| BaeGI | GKGCMC | 1 cut(s) | 203 |
| BanII | GRGCYC | 1 cut(s) | 544 |
| BbsI | GAAGAC | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 1 cut(s) | 203 |
| BbvI | GCAGC | 1 cut(s) | 611 |
| BccI | CCATC | 2 cut(s) | 53, 869 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 180, 214 |
| BciT130I | CCWGG | 3 cut(s) | 211, 287, 867 |
| BciVI | GTATCC | 2 cut(s) | 345, 861 |
| BclI | TGATCA | 1 cut(s) | 486 |
| BcoDI | GTCTC | 2 cut(s) | 164, 526 |
| BfaI | CTAG | 4 cut(s) | 131, 147, 185, 234 |
| BfuAI | ACCTGC | 1 cut(s) | 186 |
| BfuI | GTATCC | 2 cut(s) | 345, 861 |
| BisI | GCNGC | 1 cut(s) | 600 |
| BlsI | GCNGC | 1 cut(s) | 601 |
| BmcAI | AGTACT | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 3 cut(s) | 211, 287, 867 |
| Bme18I | GGWCC | 1 cut(s) | 869 |
| BmgT120I | GGNCC | 4 cut(s) | 62, 143, 315, 869 |
| BmiI | GGNNCC | 2 cut(s) | 95, 317 |
| BmrFI | CCNGG | 3 cut(s) | 211, 287, 867 |
| BmsI | GCATC | 2 cut(s) | 658, 870 |
| BpiI | GAAGAC | 1 cut(s) | 389 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 1 cut(s) | 498 |
| Bsa29I | ATCGAT | 1 cut(s) | 57 |
| BsaAI | YACGTR | 1 cut(s) | 156 |
| BsaBI | GATNNNNATC | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 1 cut(s) | 5 |
| BsaWI | WCCGGW | 3 cut(s) | 407, 781, 871 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 464, 494, 706, 736 |
| Bse1I | ACTGG | 2 cut(s) | 275, 583 |
| Bse8I | GATNNNNATC | 1 cut(s) | 264 |
| BseAI | TCCGGA | 1 cut(s) | 871 |
| BseBI | CCWGG | 3 cut(s) | 211, 287, 867 |
| BseCI | ATCGAT | 1 cut(s) | 57 |
| BseDI | CCNNGG | 1 cut(s) | 5 |
| BseGI | GGATG | 4 cut(s) | 670, 826, 880, 885 |
| BseJI | GATNNNNATC | 1 cut(s) | 264 |
| BseNI | ACTGG | 2 cut(s) | 275, 583 |
| BseRI | GAGGAG | 1 cut(s) | 485 |
| BseSI | GKGCMC | 1 cut(s) | 203 |
| BseXI | GCAGC | 1 cut(s) | 611 |
| BseYI | CCCAGC | 1 cut(s) | 671 |
| BsgI | GTGCAG | 1 cut(s) | 164 |
| BshFI | GGCC | 4 cut(s) | 64, 144, 316, 1045 |
| BshVI | ATCGAT | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 1 cut(s) | 203 |
| BsiSI | CCGG | 3 cut(s) | 408, 782, 872 |
| BsmAI | GTCTC | 2 cut(s) | 164, 526 |
| BsnI | GGCC | 4 cut(s) | 64, 144, 316, 1045 |
| Bsp1286I | GDGCHC | 2 cut(s) | 203, 544 |
| Bsp13I | TCCGGA | 1 cut(s) | 871 |
| Bsp1407I | TGTACA | 1 cut(s) | 810 |
| Bsp143I | GATC | 4 cut(s) | 54, 127, 370, 486 |
| Bsp19I | CCATGG | 1 cut(s) | 5 |
| BspACI | CCGC | 1 cut(s) | 592 |
| BspANI | GGCC | 4 cut(s) | 64, 144, 316, 1045 |
| BspDI | ATCGAT | 1 cut(s) | 57 |
| BspEI | TCCGGA | 1 cut(s) | 871 |
| BspLI | GGNNCC | 2 cut(s) | 95, 317 |
| BspMI | ACCTGC | 1 cut(s) | 186 |
| BspPI | GGATC | 1 cut(s) | 365 |
| BsrGI | TGTACA | 1 cut(s) | 810 |
| BsrI | ACTGG | 2 cut(s) | 275, 583 |
| BssECI | CCNNGG | 1 cut(s) | 5 |
| BssMI | GATC | 4 cut(s) | 54, 127, 370, 486 |
| BssT1I | CCWWGG | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 3 cut(s) | 211, 287, 867 |
| Bst4CI | ACNGT | 1 cut(s) | 650 |
| Bst6I | CTCTTC | 2 cut(s) | 470, 510 |
| BstAUI | TGTACA | 1 cut(s) | 810 |
| BstBAI | YACGTR | 1 cut(s) | 156 |
| BstC8I | GCNNGC | 2 cut(s) | 392, 441 |
| BstDEI | CTNAG | 1 cut(s) | 68 |
| BstDSI | CCRYGG | 1 cut(s) | 5 |
| BstEII | GGTNACC | 1 cut(s) | 962 |
| BstF5I | GGATG | 4 cut(s) | 670, 826, 880, 885 |
| BstKTI | GATC | 4 cut(s) | 57, 130, 373, 489 |
| BstMAI | GTCTC | 2 cut(s) | 164, 526 |
| BstMBI | GATC | 4 cut(s) | 54, 127, 370, 486 |
| BstNI | CCWGG | 3 cut(s) | 211, 287, 867 |
| BstNSI | RCATGY | 1 cut(s) | 712 |
| BstPI | GGTNACC | 1 cut(s) | 962 |
| BstSCI | CCNGG | 3 cut(s) | 209, 285, 865 |
| BstSLI | GKGCMC | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 611 |
| BstV2I | GAAGAC | 1 cut(s) | 389 |
| Bsu15I | ATCGAT | 1 cut(s) | 57 |
| BsuI | GTATCC | 2 cut(s) | 345, 861 |
| BsuRI | GGCC | 4 cut(s) | 64, 144, 316, 1045 |
| BsuTUI | ATCGAT | 1 cut(s) | 57 |
| BtgI | CCRYGG | 1 cut(s) | 5 |
| BtsCI | GGATG | 4 cut(s) | 670, 826, 880, 885 |
| BtsI | GCAGTG | 3 cut(s) | 119, 201, 714 |
| BtsIMutI | CAGTG | 3 cut(s) | 119, 201, 714 |
| BveI | ACCTGC | 1 cut(s) | 186 |
| Cac8I | GCNNGC | 2 cut(s) | 392, 441 |
| Cfr13I | GGNCC | 4 cut(s) | 62, 143, 315, 869 |
| ClaI | ATCGAT | 1 cut(s) | 57 |
| CsiI | ACCWGGT | 1 cut(s) | 865 |
| Csp6I | GTAC | 3 cut(s) | 278, 299, 811 |
| CviAII | CATG | 5 cut(s) | 6, 629, 659, 709, 742 |
| CviQI | GTAC | 3 cut(s) | 278, 299, 811 |
| DdeI | CTNAG | 1 cut(s) | 68 |
| DpnI | GATC | 4 cut(s) | 56, 129, 372, 488 |
| DpnII | GATC | 4 cut(s) | 54, 127, 370, 486 |
| DraIII | CACNNNGTG | 1 cut(s) | 257 |
| Eam1104I | CTCTTC | 2 cut(s) | 470, 510 |
| EarI | CTCTTC | 2 cut(s) | 470, 510 |
| Eco130I | CCWWGG | 1 cut(s) | 5 |
| Eco147I | AGGCCT | 1 cut(s) | 1045 |
| Eco24I | GRGCYC | 1 cut(s) | 544 |
| Eco47I | GGWCC | 1 cut(s) | 869 |
| Eco57I | CTGAAG | 1 cut(s) | 954 |
| Eco91I | GGTNACC | 1 cut(s) | 962 |
| EcoO109I | RGGNCCY | 2 cut(s) | 143, 315 |
| EcoO65I | GGTNACC | 1 cut(s) | 962 |
| EcoRI | GAATTC | 1 cut(s) | 401 |
| EcoRII | CCWGG | 3 cut(s) | 209, 285, 865 |
| EcoT14I | CCWWGG | 1 cut(s) | 5 |
| EcoT38I | GRGCYC | 1 cut(s) | 544 |
| ErhI | CCWWGG | 1 cut(s) | 5 |
| FaeI | CATG | 5 cut(s) | 9, 632, 662, 712, 745 |
| FatI | CATG | 5 cut(s) | 5, 628, 658, 708, 741 |
| FbaI | TGATCA | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 1 cut(s) | 600 |
| FokI | GGATG | 4 cut(s) | 677, 833, 887, 892 |
| FriOI | GRGCYC | 1 cut(s) | 544 |
| Fsp4HI | GCNGC | 1 cut(s) | 600 |
| FspBI | CTAG | 4 cut(s) | 131, 147, 185, 234 |
| GluI | GCNGC | 1 cut(s) | 600 |
| GsaI | CCCAGC | 1 cut(s) | 675 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| HaeIII | GGCC | 4 cut(s) | 64, 144, 316, 1045 |
| HapII | CCGG | 3 cut(s) | 408, 782, 872 |
| Hin1II | CATG | 5 cut(s) | 9, 632, 662, 712, 745 |
| HindIII | AAGCTT | 4 cut(s) | 102, 437, 494, 522 |
| HinfI | GANTC | 5 cut(s) | 34, 172, 241, 260, 1003 |
| HpaII | CCGG | 3 cut(s) | 408, 782, 872 |
| HphI | GGTGA | 3 cut(s) | 167, 250, 925 |
| Hpy166II | GTNNAC | 4 cut(s) | 201, 714, 811, 813 |
| Hpy188I | TCNGA | 6 cut(s) | 20, 98, 435, 846, 1008, 1036 |
| Hpy188III | TCNNGA | 6 cut(s) | 467, 515, 755, 872, 944, 1022 |
| Hpy8I | GTNNAC | 4 cut(s) | 201, 714, 811, 813 |
| HpyAV | CCTTC | 1 cut(s) | 557 |
| HpyCH4III | ACNGT | 1 cut(s) | 650 |
| HpyCH4IV | ACGT | 3 cut(s) | 155, 270, 692 |
| HpyCH4V | TGCA | 4 cut(s) | 181, 201, 623, 836 |
| HpyF3I | CTNAG | 1 cut(s) | 68 |
| HpySE526I | ACGT | 3 cut(s) | 155, 270, 692 |
| Hsp92II | CATG | 5 cut(s) | 9, 632, 662, 712, 745 |
| Kpn2I | TCCGGA | 1 cut(s) | 871 |
| Ksp22I | TGATCA | 1 cut(s) | 486 |
| Kzo9I | GATC | 4 cut(s) | 54, 127, 370, 486 |
| Lsp1109I | GCAGC | 1 cut(s) | 611 |
| LweI | GCATC | 2 cut(s) | 658, 870 |
| MabI | ACCWGGT | 1 cut(s) | 865 |
| MaeI | CTAG | 4 cut(s) | 131, 147, 185, 234 |
| MaeII | ACGT | 3 cut(s) | 155, 270, 692 |
| MaeIII | GTNAC | 7 cut(s) | 116, 238, 547, 688, 775, 928, 962 |
| MalI | GATC | 4 cut(s) | 56, 129, 372, 488 |
| MboI | GATC | 4 cut(s) | 54, 127, 370, 486 |
| MboII | GAAGA | 5 cut(s) | 64, 394, 487, 497, 577 |
| MfeI | CAATTG | 1 cut(s) | 726 |
| MhlI | GDGCHC | 2 cut(s) | 203, 544 |
| MluCI | AATT | 7 cut(s) | 303, 401, 624, 726, 797, 982, 1057 |
| MlyI | GAGTC | 2 cut(s) | 166, 235 |
| MmeI | TCCRAC | 2 cut(s) | 878, 922 |
| MroI | TCCGGA | 1 cut(s) | 871 |
| MroXI | GAANNNNTTC | 2 cut(s) | 762, 939 |
| MseI | TTAA | 3 cut(s) | 702, 971, 1056 |
| MslI | CAYNNNNRTG | 1 cut(s) | 663 |
| MspI | CCGG | 3 cut(s) | 408, 782, 872 |
| MspR9I | CCNGG | 3 cut(s) | 211, 287, 867 |
| MunI | CAATTG | 1 cut(s) | 726 |
| MvaI | CCWGG | 3 cut(s) | 211, 287, 867 |
| NcoI | CCATGG | 1 cut(s) | 5 |
| NdeII | GATC | 4 cut(s) | 54, 127, 370, 486 |
| NlaIII | CATG | 5 cut(s) | 9, 632, 662, 712, 745 |
| NlaIV | GGNNCC | 2 cut(s) | 95, 317 |
| NmuCI | GTSAC | 5 cut(s) | 116, 238, 547, 775, 928 |
| NspI | RCATGY | 1 cut(s) | 712 |
| PaqCI | CACCTGC | 1 cut(s) | 186 |
| PceI | AGGCCT | 1 cut(s) | 1045 |
| PciI | ACATGT | 1 cut(s) | 708 |
| PdmI | GAANNNNTTC | 2 cut(s) | 762, 939 |
| PfeI | GAWTC | 3 cut(s) | 34, 260, 1003 |
| PkrI | GCNGC | 1 cut(s) | 601 |
| PleI | GAGTC | 2 cut(s) | 166, 235 |
| PpsI | GAGTC | 2 cut(s) | 166, 235 |
| Ppu21I | YACGTR | 1 cut(s) | 156 |
| PscI | ACATGT | 1 cut(s) | 708 |
| Psp6I | CCWGG | 3 cut(s) | 209, 285, 865 |
| PspEI | GGTNACC | 1 cut(s) | 962 |
| PspFI | CCCAGC | 1 cut(s) | 671 |
| PspGI | CCWGG | 3 cut(s) | 209, 285, 865 |
| PspN4I | GGNNCC | 2 cut(s) | 95, 317 |
| PspPI | GGNCC | 4 cut(s) | 62, 143, 315, 869 |
| RsaI | GTAC | 3 cut(s) | 279, 300, 812 |
| RsaNI | GTAC | 3 cut(s) | 278, 299, 811 |
| RseI | CAYNNNNRTG | 1 cut(s) | 663 |
| SaqAI | TTAA | 3 cut(s) | 702, 971, 1056 |
| SatI | GCNGC | 1 cut(s) | 600 |
| Sau3AI | GATC | 4 cut(s) | 54, 127, 370, 486 |
| Sau96I | GGNCC | 4 cut(s) | 62, 143, 315, 869 |
| ScaI | AGTACT | 1 cut(s) | 279 |
| SchI | GAGTC | 2 cut(s) | 166, 235 |
| ScrFI | CCNGG | 3 cut(s) | 211, 287, 867 |
| SduI | GDGCHC | 2 cut(s) | 203, 544 |
| SexAI | ACCWGGT | 1 cut(s) | 865 |
| SfaNI | GCATC | 2 cut(s) | 658, 870 |
| SinI | GGWCC | 1 cut(s) | 869 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 663 |
| SmlI | CTYRAG | 1 cut(s) | 513 |
| SmoI | CTYRAG | 1 cut(s) | 513 |
| Sse9I | AATT | 7 cut(s) | 303, 401, 624, 726, 797, 982, 1057 |
| SseBI | AGGCCT | 1 cut(s) | 1045 |
| SsiI | CCGC | 1 cut(s) | 592 |
| SspMI | CTAG | 4 cut(s) | 131, 147, 185, 234 |
| StuI | AGGCCT | 1 cut(s) | 1045 |
| StyD4I | CCNGG | 3 cut(s) | 209, 285, 865 |
| StyI | CCWWGG | 1 cut(s) | 5 |
| TaaI | ACNGT | 1 cut(s) | 650 |
| TaiI | ACGT | 3 cut(s) | 158, 273, 695 |
| TaqI | TCGA | 2 cut(s) | 57, 1014 |
| TaqII | GACCGA | 1 cut(s) | 204 |
| TasI | AATT | 7 cut(s) | 303, 401, 624, 726, 797, 982, 1057 |
| TatI | WGTACW | 2 cut(s) | 277, 810 |
| TfiI | GAWTC | 3 cut(s) | 34, 260, 1003 |
| Tru1I | TTAA | 3 cut(s) | 702, 971, 1056 |
| Tru9I | TTAA | 3 cut(s) | 702, 971, 1056 |
| TscAI | CASTG | 3 cut(s) | 119, 201, 721 |
| TseFI | GTSAC | 5 cut(s) | 116, 238, 547, 775, 928 |
| TseI | GCWGC | 1 cut(s) | 599 |
| Tsp45I | GTSAC | 5 cut(s) | 116, 238, 547, 775, 928 |
| TspDTI | ATGAA | 4 cut(s) | 617, 657, 758, 803 |
| TspGWI | ACGGA | 1 cut(s) | 830 |
| TspRI | CASTG | 3 cut(s) | 119, 201, 721 |
| VneI | GTGCAC | 1 cut(s) | 199 |
| VpaK11BI | GGWCC | 1 cut(s) | 869 |
| XapI | RAATTY | 2 cut(s) | 401, 982 |
| XceI | RCATGY | 1 cut(s) | 712 |
| XmnI | GAANNNNTTC | 2 cut(s) | 762, 939 |
| XspI | CTAG | 4 cut(s) | 131, 147, 185, 234 |
| ZrmI | AGTACT | 1 cut(s) | 279 |