ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 495 |
| AccII | CGCG | 1 cut(s) | 274 |
| AciI | CCGC | 6 cut(s) | 112, 150, 272, 410, 653, 676 |
| AclWI | GGATC | 2 cut(s) | 37, 43 |
| AcsI | RAATTY | 1 cut(s) | 237 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 156, 491 |
| AgsI | TTSAA | 3 cut(s) | 63, 527, 637 |
| AjnI | CCWGG | 2 cut(s) | 142, 551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 371, 403 |
| AluBI | AGCT | 2 cut(s) | 426, 619 |
| AluI | AGCT | 2 cut(s) | 426, 619 |
| Alw26I | GTCTC | 1 cut(s) | 368 |
| AlwI | GGATC | 2 cut(s) | 37, 43 |
| AoxI | GGCC | 2 cut(s) | 147, 510 |
| ApeKI | GCWGC | 2 cut(s) | 55, 469 |
| ApoI | RAATTY | 1 cut(s) | 237 |
| AspA2I | CCTAGG | 1 cut(s) | 334 |
| AspLEI | GCGC | 1 cut(s) | 120 |
| AspS9I | GGNCC | 3 cut(s) | 147, 331, 673 |
| AsuC2I | CCSGG | 1 cut(s) | 302 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 584 |
| AvaII | GGWCC | 2 cut(s) | 331, 673 |
| AvrII | CCTAGG | 1 cut(s) | 334 |
| BaeGI | GKGCMC | 1 cut(s) | 498 |
| BanI | GGYRCC | 1 cut(s) | 495 |
| BbsI | GAAGAC | 2 cut(s) | 197, 274 |
| BbvI | GCAGC | 2 cut(s) | 67, 481 |
| BccI | CCATC | 2 cut(s) | 95, 257 |
| BceAI | ACGGC | 2 cut(s) | 81, 623 |
| BciT130I | CCWGG | 2 cut(s) | 144, 553 |
| BcnI | CCSGG | 1 cut(s) | 302 |
| BcoDI | GTCTC | 1 cut(s) | 368 |
| BfaI | CTAG | 3 cut(s) | 14, 335, 611 |
| BfmI | CTRYAG | 1 cut(s) | 405 |
| BfoI | RGCGCY | 1 cut(s) | 121 |
| BisI | GCNGC | 3 cut(s) | 56, 150, 470 |
| BlnI | CCTAGG | 1 cut(s) | 334 |
| BlsI | GCNGC | 3 cut(s) | 57, 151, 471 |
| Bme1390I | CCNGG | 3 cut(s) | 144, 302, 553 |
| Bme18I | GGWCC | 2 cut(s) | 331, 673 |
| BmgT120I | GGNCC | 3 cut(s) | 147, 331, 673 |
| BmiI | GGNNCC | 3 cut(s) | 148, 299, 497 |
| BmrFI | CCNGG | 3 cut(s) | 144, 302, 553 |
| BmsI | GCATC | 3 cut(s) | 70, 257, 538 |
| BpiI | GAAGAC | 2 cut(s) | 197, 274 |
| BpuEI | CTTGAG | 1 cut(s) | 164 |
| BpuMI | CCSGG | 1 cut(s) | 302 |
| BsaBI | GATNNNNATC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 3 cut(s) | 143, 209, 334 |
| BsaWI | WCCGGW | 2 cut(s) | 277, 484 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 156, 491 |
| Bse1I | ACTGG | 2 cut(s) | 538, 549 |
| Bse3DI | GCAATG | 1 cut(s) | 90 |
| Bse8I | GATNNNNATC | 1 cut(s) | 47 |
| BseBI | CCWGG | 2 cut(s) | 144, 553 |
| BseDI | CCNNGG | 3 cut(s) | 143, 209, 334 |
| BseGI | GGATG | 3 cut(s) | 174, 429, 553 |
| BseJI | GATNNNNATC | 1 cut(s) | 47 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 156, 491 |
| BseMI | GCAATG | 1 cut(s) | 90 |
| BseNI | ACTGG | 2 cut(s) | 538, 549 |
| BseRI | GAGGAG | 2 cut(s) | 629, 673 |
| BseSI | GKGCMC | 1 cut(s) | 498 |
| BseXI | GCAGC | 2 cut(s) | 67, 481 |
| Bsh1236I | CGCG | 1 cut(s) | 274 |
| Bsh1285I | CGRYCG | 1 cut(s) | 278 |
| BshFI | GGCC | 2 cut(s) | 149, 512 |
| BshNI | GGYRCC | 1 cut(s) | 495 |
| BsiEI | CGRYCG | 1 cut(s) | 278 |
| BsiSI | CCGG | 4 cut(s) | 52, 278, 301, 485 |
| BslFI | GGGAC | 1 cut(s) | 185 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 156, 491 |
| BsmAI | GTCTC | 1 cut(s) | 368 |
| BsmBI | CGTCTC | 1 cut(s) | 368 |
| BsmFI | GGGAC | 1 cut(s) | 185 |
| BsnI | GGCC | 2 cut(s) | 149, 512 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp143I | GATC | 4 cut(s) | 42, 48, 588, 602 |
| BspACI | CCGC | 6 cut(s) | 112, 150, 272, 410, 653, 676 |
| BspANI | GGCC | 2 cut(s) | 149, 512 |
| BspFNI | CGCG | 1 cut(s) | 274 |
| BspHI | TCATGA | 1 cut(s) | 454 |
| BspLI | GGNNCC | 3 cut(s) | 148, 299, 497 |
| BspPI | GGATC | 2 cut(s) | 37, 43 |
| BspT107I | GGYRCC | 1 cut(s) | 495 |
| BsrDI | GCAATG | 1 cut(s) | 90 |
| BsrI | ACTGG | 2 cut(s) | 538, 549 |
| BssECI | CCNNGG | 3 cut(s) | 143, 209, 334 |
| BssMI | GATC | 4 cut(s) | 42, 48, 588, 602 |
| BssT1I | CCWWGG | 1 cut(s) | 334 |
| Bst2UI | CCWGG | 2 cut(s) | 144, 553 |
| Bst4CI | ACNGT | 2 cut(s) | 137, 203 |
| Bst6I | CTCTTC | 1 cut(s) | 27 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 548 |
| BstDEI | CTNAG | 1 cut(s) | 623 |
| BstDSI | CCRYGG | 1 cut(s) | 209 |
| BstF5I | GGATG | 3 cut(s) | 174, 429, 553 |
| BstFNI | CGCG | 1 cut(s) | 274 |
| BstH2I | RGCGCY | 1 cut(s) | 121 |
| BstHHI | GCGC | 1 cut(s) | 120 |
| BstKTI | GATC | 4 cut(s) | 45, 51, 591, 605 |
| BstMAI | GTCTC | 1 cut(s) | 368 |
| BstMBI | GATC | 4 cut(s) | 42, 48, 588, 602 |
| BstMCI | CGRYCG | 1 cut(s) | 278 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 475, 548, 616 |
| BstNI | CCWGG | 2 cut(s) | 144, 553 |
| BstSCI | CCNGG | 3 cut(s) | 142, 300, 551 |
| BstSFI | CTRYAG | 1 cut(s) | 405 |
| BstSLI | GKGCMC | 1 cut(s) | 498 |
| BstUI | CGCG | 1 cut(s) | 274 |
| BstV1I | GCAGC | 2 cut(s) | 67, 481 |
| BstV2I | GAAGAC | 2 cut(s) | 197, 274 |
| BstX2I | RGATCY | 2 cut(s) | 42, 48 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 293, 360 |
| BstYI | RGATCY | 2 cut(s) | 42, 48 |
| BsuRI | GGCC | 2 cut(s) | 149, 512 |
| BtgI | CCRYGG | 1 cut(s) | 209 |
| BtsCI | GGATG | 3 cut(s) | 174, 429, 553 |
| BtsI | GCAGTG | 1 cut(s) | 479 |
| BtsIMutI | CAGTG | 2 cut(s) | 479, 542 |
| CciI | TCATGA | 1 cut(s) | 454 |
| CfoI | GCGC | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 3 cut(s) | 147, 331, 673 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 309, 344 |
| CviAII | CATG | 2 cut(s) | 443, 455 |
| DdeI | CTNAG | 1 cut(s) | 623 |
| DpnI | GATC | 4 cut(s) | 44, 50, 590, 604 |
| DpnII | GATC | 4 cut(s) | 42, 48, 588, 602 |
| Eam1104I | CTCTTC | 1 cut(s) | 27 |
| EarI | CTCTTC | 1 cut(s) | 27 |
| EciI | GGCGGA | 1 cut(s) | 668 |
| Eco130I | CCWWGG | 1 cut(s) | 334 |
| Eco47I | GGWCC | 2 cut(s) | 331, 673 |
| EcoRII | CCWGG | 2 cut(s) | 142, 551 |
| EcoT14I | CCWWGG | 1 cut(s) | 334 |
| ErhI | CCWWGG | 1 cut(s) | 334 |
| Esp3I | CGTCTC | 1 cut(s) | 368 |
| FaeI | CATG | 2 cut(s) | 446, 458 |
| FaiI | YATR | 8 cut(s) | 110, 318, 345, 355, 357, 444, 456, 503 |
| FaqI | GGGAC | 1 cut(s) | 185 |
| FatI | CATG | 2 cut(s) | 442, 454 |
| Fnu4HI | GCNGC | 3 cut(s) | 56, 150, 470 |
| FokI | GGATG | 3 cut(s) | 161, 416, 560 |
| Fsp4HI | GCNGC | 3 cut(s) | 56, 150, 470 |
| FspBI | CTAG | 3 cut(s) | 14, 335, 611 |
| GlaI | GCGC | 1 cut(s) | 119 |
| GluI | GCNGC | 3 cut(s) | 56, 150, 470 |
| HaeII | RGCGCY | 1 cut(s) | 121 |
| HaeIII | GGCC | 2 cut(s) | 149, 512 |
| HapII | CCGG | 4 cut(s) | 52, 278, 301, 485 |
| HhaI | GCGC | 1 cut(s) | 120 |
| Hin1II | CATG | 2 cut(s) | 446, 458 |
| Hin6I | GCGC | 1 cut(s) | 118 |
| HinP1I | GCGC | 1 cut(s) | 118 |
| HinfI | GANTC | 3 cut(s) | 164, 368, 598 |
| HpaII | CCGG | 4 cut(s) | 52, 278, 301, 485 |
| HphI | GGTGA | 2 cut(s) | 49, 584 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 4 cut(s) | 253, 373, 421, 697 |
| Hpy188III | TCNNGA | 3 cut(s) | 25, 46, 455 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| HpyAV | CCTTC | 3 cut(s) | 69, 89, 373 |
| HpyCH4III | ACNGT | 2 cut(s) | 137, 203 |
| HpyCH4IV | ACGT | 1 cut(s) | 481 |
| HpyCH4V | TGCA | 3 cut(s) | 83, 320, 542 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 475, 548, 616 |
| HpyF3I | CTNAG | 1 cut(s) | 623 |
| HpySE526I | ACGT | 1 cut(s) | 481 |
| Hsp92II | CATG | 2 cut(s) | 446, 458 |
| HspAI | GCGC | 1 cut(s) | 118 |
| Kzo9I | GATC | 4 cut(s) | 42, 48, 588, 602 |
| LmnI | GCTCC | 1 cut(s) | 616 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 481 |
| LweI | GCATC | 3 cut(s) | 70, 257, 538 |
| MaeI | CTAG | 3 cut(s) | 14, 335, 611 |
| MaeII | ACGT | 1 cut(s) | 481 |
| MalI | GATC | 4 cut(s) | 44, 50, 590, 604 |
| MboI | GATC | 4 cut(s) | 42, 48, 588, 602 |
| MboII | GAAGA | 6 cut(s) | 44, 52, 197, 279, 529, 532 |
| MflI | RGATCY | 2 cut(s) | 42, 48 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MluCI | AATT | 3 cut(s) | 237, 257, 323 |
| MmeI | TCCRAC | 1 cut(s) | 369 |
| MnlI | CCTC | 9 cut(s) | 28, 85, 188, 298, 439, 523, 607, 651, 691 |
| MseI | TTAA | 1 cut(s) | 231 |
| MspA1I | CMGCKG | 1 cut(s) | 410 |
| MspI | CCGG | 4 cut(s) | 52, 278, 301, 485 |
| MspR9I | CCNGG | 3 cut(s) | 144, 302, 553 |
| MvaI | CCWGG | 2 cut(s) | 144, 553 |
| MvnI | CGCG | 1 cut(s) | 274 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 475, 548, 616 |
| NciI | CCSGG | 1 cut(s) | 302 |
| NdeII | GATC | 4 cut(s) | 42, 48, 588, 602 |
| NlaIII | CATG | 2 cut(s) | 446, 458 |
| NlaIV | GGNNCC | 3 cut(s) | 148, 299, 497 |
| NmeAIII | GCCGAG | 1 cut(s) | 418 |
| PagI | TCATGA | 1 cut(s) | 454 |
| PfeI | GAWTC | 3 cut(s) | 164, 368, 598 |
| PfoI | TCCNGGA | 1 cut(s) | 300 |
| PkrI | GCNGC | 3 cut(s) | 57, 151, 471 |
| Psp6I | CCWGG | 2 cut(s) | 142, 551 |
| PspGI | CCWGG | 2 cut(s) | 142, 551 |
| PspN4I | GGNNCC | 3 cut(s) | 148, 299, 497 |
| PspPI | GGNCC | 3 cut(s) | 147, 331, 673 |
| PsuI | RGATCY | 2 cut(s) | 42, 48 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| SatI | GCNGC | 3 cut(s) | 56, 150, 470 |
| Sau3AI | GATC | 4 cut(s) | 42, 48, 588, 602 |
| Sau96I | GGNCC | 3 cut(s) | 147, 331, 673 |
| ScrFI | CCNGG | 3 cut(s) | 144, 302, 553 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SetI | ASST | 9 cut(s) | 10, 19, 39, 336, 384, 428, 484, 621, 629 |
| SfaNI | GCATC | 3 cut(s) | 70, 257, 538 |
| SfcI | CTRYAG | 1 cut(s) | 405 |
| SinI | GGWCC | 2 cut(s) | 331, 673 |
| SmlI | CTYRAG | 1 cut(s) | 179 |
| SmoI | CTYRAG | 1 cut(s) | 179 |
| Sse9I | AATT | 3 cut(s) | 237, 257, 323 |
| SsiI | CCGC | 6 cut(s) | 112, 150, 272, 410, 653, 676 |
| SspMI | CTAG | 3 cut(s) | 14, 335, 611 |
| StyD4I | CCNGG | 3 cut(s) | 142, 300, 551 |
| StyI | CCWWGG | 1 cut(s) | 334 |
| TaaI | ACNGT | 2 cut(s) | 137, 203 |
| TaiI | ACGT | 1 cut(s) | 484 |
| TaqI | TCGA | 2 cut(s) | 515, 601 |
| TasI | AATT | 3 cut(s) | 237, 257, 323 |
| TauI | GCSGC | 1 cut(s) | 152 |
| TfiI | GAWTC | 3 cut(s) | 164, 368, 598 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TscAI | CASTG | 2 cut(s) | 479, 549 |
| TseI | GCWGC | 2 cut(s) | 55, 469 |
| TspDTI | ATGAA | 2 cut(s) | 45, 418 |
| TspGWI | ACGGA | 2 cut(s) | 198, 608 |
| TspRI | CASTG | 2 cut(s) | 479, 549 |
| VpaK11BI | GGWCC | 2 cut(s) | 331, 673 |
| XapI | RAATTY | 1 cut(s) | 237 |
| XmaJI | CCTAGG | 1 cut(s) | 334 |
| XspI | CTAG | 3 cut(s) | 14, 335, 611 |