ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 139 |
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AccII | CGCG | 2 cut(s) | 124, 126 |
| AciI | CCGC | 2 cut(s) | 122, 175 |
| AclWI | GGATC | 1 cut(s) | 395 |
| AfaI | GTAC | 2 cut(s) | 161, 475 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 700 |
| AflIII | ACRYGT | 1 cut(s) | 149 |
| AgsI | TTSAA | 4 cut(s) | 27, 35, 111, 344 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 199 |
| AjnI | CCWGG | 4 cut(s) | 211, 263, 649, 693 |
| AluBI | AGCT | 1 cut(s) | 533 |
| AluI | AGCT | 1 cut(s) | 533 |
| Alw21I | GWGCWC | 1 cut(s) | 528 |
| Alw26I | GTCTC | 1 cut(s) | 731 |
| AlwI | GGATC | 1 cut(s) | 395 |
| AoxI | GGCC | 1 cut(s) | 57 |
| ApeKI | GCWGC | 1 cut(s) | 545 |
| AspLEI | GCGC | 3 cut(s) | 126, 128, 140 |
| AspS9I | GGNCC | 2 cut(s) | 215, 261 |
| AsuC2I | CCSGG | 1 cut(s) | 744 |
| AsuHPI | GGTGA | 2 cut(s) | 279, 476 |
| AvaII | GGWCC | 2 cut(s) | 215, 261 |
| BaeGI | GKGCMC | 1 cut(s) | 304 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BbsI | GAAGAC | 1 cut(s) | 678 |
| Bbv12I | GWGCWC | 1 cut(s) | 528 |
| BbvI | GCAGC | 1 cut(s) | 532 |
| BccI | CCATC | 1 cut(s) | 281 |
| BciT130I | CCWGG | 4 cut(s) | 213, 265, 651, 695 |
| BclI | TGATCA | 2 cut(s) | 356, 560 |
| BcnI | CCSGG | 1 cut(s) | 744 |
| BcoDI | GTCTC | 1 cut(s) | 731 |
| BfaI | CTAG | 3 cut(s) | 129, 163, 307 |
| BisI | GCNGC | 1 cut(s) | 546 |
| BlsI | GCNGC | 1 cut(s) | 547 |
| BmcAI | AGTACT | 1 cut(s) | 161 |
| Bme1390I | CCNGG | 5 cut(s) | 213, 265, 651, 695, 744 |
| Bme18I | GGWCC | 2 cut(s) | 215, 261 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 2 cut(s) | 215, 261 |
| BmiI | GGNNCC | 2 cut(s) | 217, 303 |
| BmrFI | CCNGG | 5 cut(s) | 213, 265, 651, 695, 744 |
| BmsI | GCATC | 1 cut(s) | 587 |
| BpiI | GAAGAC | 1 cut(s) | 678 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BpuMI | CCSGG | 1 cut(s) | 744 |
| Bsa29I | ATCGAT | 1 cut(s) | 241 |
| BsaBI | GATNNNNATC | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 1 cut(s) | 19 |
| BsaWI | WCCGGW | 1 cut(s) | 91 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 612, 642 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 700 |
| Bse118I | RCCGGY | 1 cut(s) | 55 |
| Bse1I | ACTGG | 2 cut(s) | 440, 676 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| Bse8I | GATNNNNATC | 1 cut(s) | 322 |
| BseBI | CCWGG | 4 cut(s) | 213, 265, 651, 695 |
| BseCI | ATCGAT | 1 cut(s) | 241 |
| BseDI | CCNNGG | 1 cut(s) | 19 |
| BseGI | GGATG | 2 cut(s) | 208, 597 |
| BseJI | GATNNNNATC | 1 cut(s) | 322 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 700 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseNI | ACTGG | 2 cut(s) | 440, 676 |
| BsePI | GCGCGC | 1 cut(s) | 124 |
| BseRI | GAGGAG | 1 cut(s) | 220 |
| BseSI | GKGCMC | 1 cut(s) | 304 |
| BseXI | GCAGC | 1 cut(s) | 532 |
| BsgI | GTGCAG | 2 cut(s) | 102, 508 |
| Bsh1236I | CGCG | 2 cut(s) | 124, 126 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BshVI | ATCGAT | 1 cut(s) | 241 |
| BsiHKAI | GWGCWC | 1 cut(s) | 528 |
| BsiSI | CCGG | 3 cut(s) | 56, 92, 743 |
| BslFI | GGGAC | 1 cut(s) | 201 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 700 |
| BsmAI | GTCTC | 1 cut(s) | 731 |
| BsmFI | GGGAC | 1 cut(s) | 201 |
| BsmI | GAATGC | 2 cut(s) | 629, 730 |
| BsnI | GGCC | 1 cut(s) | 59 |
| Bsp1286I | GDGCHC | 2 cut(s) | 304, 528 |
| Bsp143I | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| BspACI | CCGC | 2 cut(s) | 122, 175 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspDI | ATCGAT | 1 cut(s) | 241 |
| BspFNI | CGCG | 2 cut(s) | 124, 126 |
| BspLI | GGNNCC | 2 cut(s) | 217, 303 |
| BspPI | GGATC | 1 cut(s) | 395 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrFI | RCCGGY | 1 cut(s) | 55 |
| BsrI | ACTGG | 2 cut(s) | 440, 676 |
| BssAI | RCCGGY | 1 cut(s) | 55 |
| BssECI | CCNNGG | 1 cut(s) | 19 |
| BssHII | GCGCGC | 1 cut(s) | 124 |
| BssMI | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| Bst2UI | CCWGG | 4 cut(s) | 213, 265, 651, 695 |
| Bst4CI | ACNGT | 3 cut(s) | 23, 478, 486 |
| Bst6I | CTCTTC | 1 cut(s) | 308 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDEI | CTNAG | 3 cut(s) | 469, 529, 579 |
| BstDSI | CCRYGG | 1 cut(s) | 19 |
| BstEII | GGTNACC | 1 cut(s) | 267 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 698 |
| BstF5I | GGATG | 2 cut(s) | 208, 597 |
| BstFNI | CGCG | 2 cut(s) | 124, 126 |
| BstHHI | GCGC | 3 cut(s) | 126, 128, 140 |
| BstKTI | GATC | 5 cut(s) | 101, 320, 359, 403, 563 |
| BstMAI | GTCTC | 1 cut(s) | 731 |
| BstMBI | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 125, 690 |
| BstNI | CCWGG | 4 cut(s) | 213, 265, 651, 695 |
| BstNSI | RCATGY | 1 cut(s) | 153 |
| BstPI | GGTNACC | 1 cut(s) | 267 |
| BstSCI | CCNGG | 5 cut(s) | 211, 263, 649, 693, 742 |
| BstSLI | GKGCMC | 1 cut(s) | 304 |
| BstUI | CGCG | 2 cut(s) | 124, 126 |
| BstV1I | GCAGC | 1 cut(s) | 532 |
| BstV2I | GAAGAC | 1 cut(s) | 678 |
| BstX2I | RGATCY | 1 cut(s) | 400 |
| BstYI | RGATCY | 1 cut(s) | 400 |
| Bsu15I | ATCGAT | 1 cut(s) | 241 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BsuTUI | ATCGAT | 1 cut(s) | 241 |
| BtgI | CCRYGG | 1 cut(s) | 19 |
| BtsCI | GGATG | 2 cut(s) | 208, 597 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CfoI | GCGC | 3 cut(s) | 126, 128, 140 |
| Cfr10I | RCCGGY | 1 cut(s) | 55 |
| Cfr13I | GGNCC | 2 cut(s) | 215, 261 |
| ClaI | ATCGAT | 1 cut(s) | 241 |
| CseI | GACGC | 1 cut(s) | 490 |
| Csp6I | GTAC | 2 cut(s) | 160, 474 |
| CviAII | CATG | 5 cut(s) | 141, 150, 331, 451, 612 |
| CviJI | RGCY | 6 cut(s) | 30, 59, 354, 533, 641, 684 |
| CviKI_1 | RGCY | 6 cut(s) | 30, 59, 354, 533, 641, 684 |
| CviQI | GTAC | 2 cut(s) | 160, 474 |
| DdeI | CTNAG | 3 cut(s) | 469, 529, 579 |
| DpnI | GATC | 5 cut(s) | 100, 319, 358, 402, 562 |
| DpnII | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| DriI | GACNNNNNGTC | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 1 cut(s) | 308 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 199 |
| EarI | CTCTTC | 1 cut(s) | 308 |
| EciI | GGCGGA | 1 cut(s) | 190 |
| Eco47I | GGWCC | 2 cut(s) | 215, 261 |
| Eco91I | GGTNACC | 1 cut(s) | 267 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 698 |
| EcoO109I | RGGNCCY | 1 cut(s) | 215 |
| EcoO65I | GGTNACC | 1 cut(s) | 267 |
| EcoRII | CCWGG | 4 cut(s) | 211, 263, 649, 693 |
| FaeI | CATG | 5 cut(s) | 144, 153, 334, 454, 615 |
| FaqI | GGGAC | 1 cut(s) | 201 |
| FatI | CATG | 5 cut(s) | 140, 149, 330, 450, 611 |
| FbaI | TGATCA | 2 cut(s) | 356, 560 |
| Fnu4HI | GCNGC | 1 cut(s) | 546 |
| FokI | GGATG | 2 cut(s) | 195, 604 |
| Fsp4HI | GCNGC | 1 cut(s) | 546 |
| FspBI | CTAG | 3 cut(s) | 129, 163, 307 |
| FspI | TGCGCA | 1 cut(s) | 139 |
| GlaI | GCGC | 3 cut(s) | 125, 127, 139 |
| GluI | GCNGC | 1 cut(s) | 546 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| HapII | CCGG | 3 cut(s) | 56, 92, 743 |
| HgaI | GACGC | 1 cut(s) | 490 |
| HhaI | GCGC | 3 cut(s) | 126, 128, 140 |
| Hin1II | CATG | 5 cut(s) | 144, 153, 334, 454, 615 |
| Hin6I | GCGC | 3 cut(s) | 124, 126, 138 |
| HinP1I | GCGC | 3 cut(s) | 124, 126, 138 |
| HindIII | AAGCTT | 1 cut(s) | 531 |
| HinfI | GANTC | 5 cut(s) | 178, 222, 363, 459, 739 |
| HpaII | CCGG | 3 cut(s) | 56, 92, 743 |
| HphI | GGTGA | 2 cut(s) | 279, 476 |
| Hpy166II | GTNNAC | 1 cut(s) | 433 |
| Hpy188I | TCNGA | 5 cut(s) | 183, 413, 512, 560, 736 |
| Hpy188III | TCNNGA | 6 cut(s) | 102, 155, 191, 341, 360, 634 |
| Hpy8I | GTNNAC | 1 cut(s) | 433 |
| HpyAV | CCTTC | 4 cut(s) | 25, 70, 338, 414 |
| HpyCH4III | ACNGT | 3 cut(s) | 23, 478, 486 |
| HpyCH4V | TGCA | 3 cut(s) | 119, 489, 730 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 125, 690 |
| HpyF3I | CTNAG | 3 cut(s) | 469, 529, 579 |
| Hsp92II | CATG | 5 cut(s) | 144, 153, 334, 454, 615 |
| HspAI | GCGC | 3 cut(s) | 124, 126, 138 |
| Ksp22I | TGATCA | 2 cut(s) | 356, 560 |
| Kzo9I | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| LmnI | GCTCC | 1 cut(s) | 454 |
| Lsp1109I | GCAGC | 1 cut(s) | 532 |
| LweI | GCATC | 1 cut(s) | 587 |
| MaeI | CTAG | 3 cut(s) | 129, 163, 307 |
| MaeIII | GTNAC | 3 cut(s) | 267, 377, 464 |
| MalI | GATC | 5 cut(s) | 100, 319, 358, 402, 562 |
| MboI | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| MboII | GAAGA | 6 cut(s) | 217, 322, 325, 528, 567, 683 |
| MflI | RGATCY | 1 cut(s) | 400 |
| MhlI | GDGCHC | 2 cut(s) | 304, 528 |
| MluCI | AATT | 2 cut(s) | 250, 664 |
| MlyI | GAGTC | 4 cut(s) | 172, 357, 453, 733 |
| MmeI | TCCRAC | 1 cut(s) | 632 |
| MnlI | CCTC | 4 cut(s) | 191, 241, 582, 742 |
| MseI | TTAA | 1 cut(s) | 394 |
| MspI | CCGG | 3 cut(s) | 56, 92, 743 |
| MspR9I | CCNGG | 5 cut(s) | 213, 265, 651, 695, 744 |
| Mva1269I | GAATGC | 2 cut(s) | 629, 730 |
| MvaI | CCWGG | 4 cut(s) | 213, 265, 651, 695 |
| MvnI | CGCG | 2 cut(s) | 124, 126 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 125, 690 |
| NciI | CCSGG | 1 cut(s) | 744 |
| NdeII | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| NlaIII | CATG | 5 cut(s) | 144, 153, 334, 454, 615 |
| NlaIV | GGNNCC | 2 cut(s) | 217, 303 |
| NmuCI | GTSAC | 3 cut(s) | 267, 377, 464 |
| NsbI | TGCGCA | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 153 |
| PauI | GCGCGC | 1 cut(s) | 124 |
| PciI | ACATGT | 1 cut(s) | 149 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 482 |
| PctI | GAATGC | 2 cut(s) | 629, 730 |
| PfeI | GAWTC | 1 cut(s) | 222 |
| PfoI | TCCNGGA | 1 cut(s) | 742 |
| PkrI | GCNGC | 1 cut(s) | 547 |
| PleI | GAGTC | 4 cut(s) | 172, 357, 453, 733 |
| PpsI | GAGTC | 4 cut(s) | 172, 357, 453, 733 |
| PpuMI | RGGWCCY | 1 cut(s) | 215 |
| PscI | ACATGT | 1 cut(s) | 149 |
| Psp5II | RGGWCCY | 1 cut(s) | 215 |
| Psp6I | CCWGG | 4 cut(s) | 211, 263, 649, 693 |
| PspEI | GGTNACC | 1 cut(s) | 267 |
| PspGI | CCWGG | 4 cut(s) | 211, 263, 649, 693 |
| PspN4I | GGNNCC | 2 cut(s) | 217, 303 |
| PspPI | GGNCC | 2 cut(s) | 215, 261 |
| PspPPI | RGGWCCY | 1 cut(s) | 215 |
| PsuI | RGATCY | 1 cut(s) | 400 |
| PteI | GCGCGC | 1 cut(s) | 124 |
| RsaI | GTAC | 2 cut(s) | 161, 475 |
| RsaNI | GTAC | 2 cut(s) | 160, 474 |
| SaqAI | TTAA | 1 cut(s) | 394 |
| SatI | GCNGC | 1 cut(s) | 546 |
| Sau3AI | GATC | 5 cut(s) | 98, 317, 356, 400, 560 |
| Sau96I | GGNCC | 2 cut(s) | 215, 261 |
| ScaI | AGTACT | 1 cut(s) | 161 |
| SchI | GAGTC | 4 cut(s) | 172, 357, 453, 733 |
| ScrFI | CCNGG | 5 cut(s) | 213, 265, 651, 695, 744 |
| SduI | GDGCHC | 2 cut(s) | 304, 528 |
| SetI | ASST | 6 cut(s) | 217, 269, 475, 535, 655, 753 |
| SfaNI | GCATC | 1 cut(s) | 587 |
| SinI | GGWCC | 2 cut(s) | 215, 261 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 2 cut(s) | 250, 664 |
| SsiI | CCGC | 2 cut(s) | 122, 175 |
| SspMI | CTAG | 3 cut(s) | 129, 163, 307 |
| StyD4I | CCNGG | 5 cut(s) | 211, 263, 649, 693, 742 |
| TaaI | ACNGT | 3 cut(s) | 23, 478, 486 |
| TaqI | TCGA | 3 cut(s) | 101, 241, 320 |
| TasI | AATT | 2 cut(s) | 250, 664 |
| TatI | WGTACW | 1 cut(s) | 159 |
| TfiI | GAWTC | 1 cut(s) | 222 |
| Tru1I | TTAA | 1 cut(s) | 394 |
| Tru9I | TTAA | 1 cut(s) | 394 |
| TseFI | GTSAC | 3 cut(s) | 267, 377, 464 |
| TseI | GCWGC | 1 cut(s) | 545 |
| Tsp45I | GTSAC | 3 cut(s) | 267, 377, 464 |
| TspDTI | ATGAA | 5 cut(s) | 157, 319, 396, 528, 628 |
| TspGWI | ACGGA | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 2 cut(s) | 215, 261 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 698 |
| XceI | RCATGY | 1 cut(s) | 153 |
| XspI | CTAG | 3 cut(s) | 129, 163, 307 |
| ZrmI | AGTACT | 1 cut(s) | 161 |