ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 31 - 71 | 1.8e-10 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 92 - 282 | 3.9e-14 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 228 - 285 | 1.4e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 249 - 420 | 1.3e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 360 - 408 | 8.8e-07 | Leucine rich repeat |
| LRR_4 | PF12799 | 373 - 414 | 2e-06 | Leucine Rich repeats (2 copies) |
| LRR_8 | PF13855 | 496 - 552 | 1.4e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 542 - 600 | 5.8e-08 | Leucine rich repeat |
| LRR_8 | PF13855 | 613 - 669 | 5.2e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 1002 - 1066 | 2.2e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 1012 - 1071 | 2.2e-08 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 951 |
| Acc65I | GGTACC | 1 cut(s) | 1738 |
| AccB1I | GGYRCC | 2 cut(s) | 1460, 1738 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 893 |
| AccBSI | CCGCTC | 1 cut(s) | 3144 |
| AccI | GTMKAC | 1 cut(s) | 2221 |
| AciI | CCGC | 5 cut(s) | 66, 1260, 3103, 3144, 3312 |
| AclWI | GGATC | 5 cut(s) | 900, 1018, 3010, 3217, 3230 |
| AcoI | YGGCCR | 1 cut(s) | 3145 |
| AcsI | RAATTY | 9 cut(s) | 131, 169, 376, 391, 420, 496, 881, 1241, 3150 |
| AcuI | CTGAAG | 5 cut(s) | 290, 1354, 1463, 1886, 2135 |
| AfaI | GTAC | 4 cut(s) | 178, 1740, 3259, 3473 |
| AflII | CTTAAG | 2 cut(s) | 965, 2173 |
| AflIII | ACRYGT | 4 cut(s) | 1059, 2395, 3040, 3413 |
| AgeI | ACCGGT | 1 cut(s) | 2829 |
| AjnI | CCWGG | 2 cut(s) | 1053, 2734 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 798, 830, 1457, 1489, 3513, 3545 |
| Alw26I | GTCTC | 8 cut(s) | 290, 903, 1619, 1763, 2751, 2850, 3202, 3568 |
| AlwI | GGATC | 5 cut(s) | 900, 1018, 3010, 3217, 3230 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 81 |
| Ama87I | CYCGRG | 2 cut(s) | 478, 3158 |
| AoxI | GGCC | 5 cut(s) | 321, 649, 2681, 3145, 3290 |
| ApeKI | GCWGC | 4 cut(s) | 210, 246, 264, 1399 |
| ApoI | RAATTY | 9 cut(s) | 131, 169, 376, 391, 420, 496, 881, 1241, 3150 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 881, 913 |
| AsiGI | ACCGGT | 1 cut(s) | 2829 |
| Asp718I | GGTACC | 1 cut(s) | 1738 |
| AspS9I | GGNCC | 8 cut(s) | 650, 1391, 1564, 1708, 1852, 1987, 2631, 3290 |
| AsuHPI | GGTGA | 9 cut(s) | 950, 1478, 1745, 2249, 2336, 2738, 2819, 2959, 3061 |
| AvaI | CYCGRG | 2 cut(s) | 478, 3158 |
| AvaII | GGWCC | 6 cut(s) | 1391, 1564, 1708, 1852, 1987, 2631 |
| AxyI | CCTNAGG | 1 cut(s) | 3012 |
| BamHI | GGATCC | 1 cut(s) | 3222 |
| BanI | GGYRCC | 2 cut(s) | 1460, 1738 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2082, 2114 |
| BbvCI | CCTCAGC | 1 cut(s) | 3513 |
| BbvI | GCAGC | 4 cut(s) | 222, 258, 276, 1386 |
| BccI | CCATC | 5 cut(s) | 361, 914, 2867, 3091, 3453 |
| BceAI | ACGGC | 1 cut(s) | 3416 |
| BciT130I | CCWGG | 2 cut(s) | 1055, 2736 |
| BciVI | GTATCC | 2 cut(s) | 1889, 3301 |
| BclI | TGATCA | 1 cut(s) | 1909 |
| BcoDI | GTCTC | 8 cut(s) | 290, 903, 1619, 1763, 2751, 2850, 3202, 3568 |
| BfaI | CTAG | 6 cut(s) | 2109, 2189, 2217, 2250, 2477, 2811 |
| BfmI | CTRYAG | 1 cut(s) | 3475 |
| BfrI | CTTAAG | 2 cut(s) | 965, 2173 |
| BfuAI | ACCTGC | 1 cut(s) | 951 |
| BfuI | GTATCC | 2 cut(s) | 1889, 3301 |
| BglII | AGATCT | 2 cut(s) | 810, 3121 |
| BisI | GCNGC | 6 cut(s) | 211, 247, 265, 1400, 3104, 3145 |
| BlsI | GCNGC | 6 cut(s) | 212, 248, 266, 1401, 3105, 3146 |
| Bme1390I | CCNGG | 2 cut(s) | 1055, 2736 |
| Bme18I | GGWCC | 6 cut(s) | 1391, 1564, 1708, 1852, 1987, 2631 |
| BmeT110I | CYCGRG | 2 cut(s) | 478, 3158 |
| BmgT120I | GGNCC | 8 cut(s) | 650, 1391, 1564, 1708, 1852, 1987, 2631, 3290 |
| BmiI | GGNNCC | 8 cut(s) | 729, 871, 1017, 1462, 1740, 2293, 3224, 3291 |
| BmrFI | CCNGG | 2 cut(s) | 1055, 2736 |
| BmrI | ACTGGG | 1 cut(s) | 1111 |
| BmsI | GCATC | 2 cut(s) | 960, 3090 |
| BmuI | ACTGGG | 1 cut(s) | 1111 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 242, 274 |
| BpmI | CTGGAG | 1 cut(s) | 3387 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3513 |
| BpuEI | CTTGAG | 6 cut(s) | 1555, 1978, 2374, 2438, 3160, 3334 |
| Bsa29I | ATCGAT | 1 cut(s) | 2126 |
| BsaI | GGTCTC | 1 cut(s) | 903 |
| BsaJI | CCNNGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| BsaWI | WCCGGW | 4 cut(s) | 724, 2829, 3056, 3071 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2969, 2999 |
| Bse118I | RCCGGY | 1 cut(s) | 2829 |
| Bse1I | ACTGG | 4 cut(s) | 584, 1012, 1106, 1197 |
| Bse21I | CCTNAGG | 1 cut(s) | 3012 |
| Bse3DI | GCAATG | 3 cut(s) | 104, 2320, 2609 |
| BseBI | CCWGG | 2 cut(s) | 1055, 2736 |
| BseCI | ATCGAT | 1 cut(s) | 2126 |
| BseDI | CCNNGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| BseGI | GGATG | 5 cut(s) | 60, 2663, 2785, 2947, 3492 |
| BseMI | GCAATG | 3 cut(s) | 104, 2320, 2609 |
| BseMII | CTCAG | 9 cut(s) | 605, 758, 1239, 2417, 2497, 2547, 3003, 3251, 3527 |
| BseNI | ACTGG | 4 cut(s) | 584, 1012, 1106, 1197 |
| BseRI | GAGGAG | 5 cut(s) | 1662, 1806, 2085, 2974, 3285 |
| BseXI | GCAGC | 4 cut(s) | 222, 258, 276, 1386 |
| BshFI | GGCC | 5 cut(s) | 323, 651, 2683, 3147, 3292 |
| BshNI | GGYRCC | 2 cut(s) | 1460, 1738 |
| BshTI | ACCGGT | 1 cut(s) | 2829 |
| BshVI | ATCGAT | 1 cut(s) | 2126 |
| BsiHKCI | CYCGRG | 2 cut(s) | 478, 3158 |
| BsiSI | CCGG | 4 cut(s) | 725, 2830, 3057, 3072 |
| BslFI | GGGAC | 7 cut(s) | 649, 937, 1068, 1171, 1220, 2169, 2646 |
| BsmAI | GTCTC | 8 cut(s) | 290, 903, 1619, 1763, 2751, 2850, 3202, 3568 |
| BsmBI | CGTCTC | 1 cut(s) | 3568 |
| BsmFI | GGGAC | 7 cut(s) | 649, 937, 1068, 1171, 1220, 2169, 2646 |
| BsmI | GAATGC | 1 cut(s) | 188 |
| BsnI | GGCC | 5 cut(s) | 323, 651, 2683, 3147, 3292 |
| Bso31I | GGTCTC | 1 cut(s) | 903 |
| BsoBI | CYCGRG | 2 cut(s) | 478, 3158 |
| BspACI | CCGC | 5 cut(s) | 66, 1260, 3103, 3144, 3312 |
| BspANI | GGCC | 5 cut(s) | 323, 651, 2683, 3147, 3292 |
| BspCNI | CTCAG | 9 cut(s) | 606, 759, 1238, 2418, 2496, 2546, 3004, 3250, 3526 |
| BspDI | ATCGAT | 1 cut(s) | 2126 |
| BspLI | GGNNCC | 8 cut(s) | 729, 871, 1017, 1462, 1740, 2293, 3224, 3291 |
| BspMI | ACCTGC | 1 cut(s) | 951 |
| BspPI | GGATC | 5 cut(s) | 900, 1018, 3010, 3217, 3230 |
| BspT107I | GGYRCC | 2 cut(s) | 1460, 1738 |
| BspTI | CTTAAG | 2 cut(s) | 965, 2173 |
| BspTNI | GGTCTC | 1 cut(s) | 903 |
| BsrBI | CCGCTC | 1 cut(s) | 3144 |
| BsrDI | GCAATG | 3 cut(s) | 104, 2320, 2609 |
| BsrFI | RCCGGY | 1 cut(s) | 2829 |
| BsrI | ACTGG | 4 cut(s) | 584, 1012, 1106, 1197 |
| BssAI | RCCGGY | 1 cut(s) | 2829 |
| BssECI | CCNNGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| BssNAI | GTATAC | 1 cut(s) | 2222 |
| BssT1I | CCWWGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| Bst1107I | GTATAC | 1 cut(s) | 2222 |
| Bst2UI | CCWGG | 2 cut(s) | 1055, 2736 |
| Bst4CI | ACNGT | 4 cut(s) | 83, 953, 1490, 2861 |
| Bst6I | CTCTTC | 8 cut(s) | 35, 293, 906, 1188, 1261, 1680, 1824, 2052 |
| BstAFI | CTTAAG | 2 cut(s) | 965, 2173 |
| BstC8I | GCNNGC | 3 cut(s) | 372, 439, 2760 |
| BstEII | GGTNACC | 1 cut(s) | 938 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 481 |
| BstF5I | GGATG | 5 cut(s) | 60, 2663, 2785, 2947, 3492 |
| BstMAI | GTCTC | 8 cut(s) | 290, 903, 1619, 1763, 2751, 2850, 3202, 3568 |
| BstNI | CCWGG | 2 cut(s) | 1055, 2736 |
| BstNSI | RCATGY | 6 cut(s) | 1063, 1444, 2399, 3044, 3417, 3551 |
| BstPI | GGTNACC | 1 cut(s) | 938 |
| BstSCI | CCNGG | 2 cut(s) | 1053, 2734 |
| BstSFI | CTRYAG | 1 cut(s) | 3475 |
| BstV1I | GCAGC | 4 cut(s) | 222, 258, 276, 1386 |
| BstX2I | RGATCY | 3 cut(s) | 810, 3121, 3222 |
| BstYI | RGATCY | 3 cut(s) | 810, 3121, 3222 |
| BstZ17I | GTATAC | 1 cut(s) | 2222 |
| Bsu15I | ATCGAT | 1 cut(s) | 2126 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3012 |
| BsuI | GTATCC | 2 cut(s) | 1889, 3301 |
| BsuRI | GGCC | 5 cut(s) | 323, 651, 2683, 3147, 3292 |
| BsuTUI | ATCGAT | 1 cut(s) | 2126 |
| BtsCI | GGATG | 5 cut(s) | 60, 2663, 2785, 2947, 3492 |
| BtsI | GCAGTG | 1 cut(s) | 602 |
| BtsIMutI | CAGTG | 6 cut(s) | 602, 1005, 1099, 1378, 2728, 3400 |
| BveI | ACCTGC | 1 cut(s) | 951 |
| Cac8I | GCNNGC | 3 cut(s) | 372, 439, 2760 |
| CaiI | CAGNNNCTG | 1 cut(s) | 81 |
| Cfr10I | RCCGGY | 1 cut(s) | 2829 |
| Cfr13I | GGNCC | 8 cut(s) | 650, 1391, 1564, 1708, 1852, 1987, 2631, 3290 |
| ClaI | ATCGAT | 1 cut(s) | 2126 |
| Csp6I | GTAC | 4 cut(s) | 177, 1739, 3258, 3472 |
| CspAI | ACCGGT | 1 cut(s) | 2829 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1354, 1389, 2410, 2445, 2704, 2739 |
| CviQI | GTAC | 4 cut(s) | 177, 1739, 3258, 3472 |
| EaeI | YGGCCR | 1 cut(s) | 3145 |
| Eam1104I | CTCTTC | 8 cut(s) | 35, 293, 906, 1188, 1261, 1680, 1824, 2052 |
| EarI | CTCTTC | 8 cut(s) | 35, 293, 906, 1188, 1261, 1680, 1824, 2052 |
| EciI | GGCGGA | 1 cut(s) | 1249 |
| Eco130I | CCWWGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| Eco31I | GGTCTC | 1 cut(s) | 903 |
| Eco32I | GATATC | 1 cut(s) | 561 |
| Eco47I | GGWCC | 6 cut(s) | 1391, 1564, 1708, 1852, 1987, 2631 |
| Eco57I | CTGAAG | 5 cut(s) | 290, 1354, 1463, 1886, 2135 |
| Eco81I | CCTNAGG | 1 cut(s) | 3012 |
| Eco88I | CYCGRG | 2 cut(s) | 478, 3158 |
| Eco91I | GGTNACC | 1 cut(s) | 938 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 481 |
| EcoO109I | RGGNCCY | 2 cut(s) | 650, 3290 |
| EcoO65I | GGTNACC | 1 cut(s) | 938 |
| EcoRI | GAATTC | 1 cut(s) | 169 |
| EcoRII | CCWGG | 2 cut(s) | 1053, 2734 |
| EcoRV | GATATC | 1 cut(s) | 561 |
| EcoT14I | CCWWGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| ErhI | CCWWGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| Esp3I | CGTCTC | 1 cut(s) | 3568 |
| FaqI | GGGAC | 7 cut(s) | 649, 937, 1068, 1171, 1220, 2169, 2646 |
| FauI | CCCGC | 1 cut(s) | 73 |
| FbaI | TGATCA | 1 cut(s) | 1909 |
| FblI | GTMKAC | 1 cut(s) | 2221 |
| Fnu4HI | GCNGC | 6 cut(s) | 211, 247, 265, 1400, 3104, 3145 |
| FokI | GGATG | 5 cut(s) | 47, 2670, 2792, 2954, 3479 |
| Fsp4HI | GCNGC | 6 cut(s) | 211, 247, 265, 1400, 3104, 3145 |
| FspBI | CTAG | 6 cut(s) | 2109, 2189, 2217, 2250, 2477, 2811 |
| GluI | GCNGC | 6 cut(s) | 211, 247, 265, 1400, 3104, 3145 |
| GsuI | CTGGAG | 1 cut(s) | 3387 |
| HaeIII | GGCC | 5 cut(s) | 323, 651, 2683, 3147, 3292 |
| HapII | CCGG | 4 cut(s) | 725, 2830, 3057, 3072 |
| HincII | GTYRAC | 2 cut(s) | 1938, 2527 |
| HindII | GTYRAC | 2 cut(s) | 1938, 2527 |
| HindIII | AAGCTT | 6 cut(s) | 155, 368, 402, 674, 1724, 1868 |
| HpaII | CCGG | 4 cut(s) | 725, 2830, 3057, 3072 |
| HphI | GGTGA | 9 cut(s) | 950, 1478, 1745, 2249, 2336, 2738, 2819, 2959, 3061 |
| Hpy166II | GTNNAC | 6 cut(s) | 73, 1394, 1938, 2222, 2527, 3553 |
| Hpy8I | GTNNAC | 6 cut(s) | 73, 1394, 1938, 2222, 2527, 3553 |
| Hpy99I | CGWCG | 1 cut(s) | 3437 |
| HpyCH4III | ACNGT | 4 cut(s) | 83, 953, 1490, 2861 |
| HpyCH4IV | ACGT | 2 cut(s) | 985, 3577 |
| HpySE526I | ACGT | 2 cut(s) | 985, 3577 |
| KpnI | GGTACC | 1 cut(s) | 1742 |
| Ksp22I | TGATCA | 1 cut(s) | 1909 |
| LmnI | GCTCC | 6 cut(s) | 114, 727, 1675, 1819, 2098, 2291 |
| Lsp1109I | GCAGC | 4 cut(s) | 222, 258, 276, 1386 |
| LweI | GCATC | 2 cut(s) | 960, 3090 |
| MaeI | CTAG | 6 cut(s) | 2109, 2189, 2217, 2250, 2477, 2811 |
| MaeII | ACGT | 2 cut(s) | 985, 3577 |
| MaeIII | GTNAC | 8 cut(s) | 49, 202, 575, 938, 2069, 2237, 2486, 3438 |
| MbiI | CCGCTC | 1 cut(s) | 3144 |
| MfeI | CAATTG | 4 cut(s) | 360, 2023, 2671, 3107 |
| MflI | RGATCY | 3 cut(s) | 810, 3121, 3222 |
| MlyI | GAGTC | 7 cut(s) | 260, 671, 744, 778, 1621, 2374, 3122 |
| MmeI | TCCRAC | 9 cut(s) | 316, 807, 1455, 1743, 1887, 2166, 2813, 2870, 3012 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1455, 3192 |
| MspA1I | CMGCKG | 2 cut(s) | 1399, 3517 |
| MspCI | CTTAAG | 2 cut(s) | 965, 2173 |
| MspI | CCGG | 4 cut(s) | 725, 2830, 3057, 3072 |
| MspR9I | CCNGG | 2 cut(s) | 1055, 2736 |
| MunI | CAATTG | 4 cut(s) | 360, 2023, 2671, 3107 |
| Mva1269I | GAATGC | 1 cut(s) | 188 |
| MvaI | CCWGG | 2 cut(s) | 1055, 2736 |
| NlaIV | GGNNCC | 8 cut(s) | 729, 871, 1017, 1462, 1740, 2293, 3224, 3291 |
| NmuCI | GTSAC | 4 cut(s) | 575, 938, 2237, 3438 |
| NspI | RCATGY | 6 cut(s) | 1063, 1444, 2399, 3044, 3417, 3551 |
| PaeR7I | CTCGAG | 1 cut(s) | 478 |
| PciI | ACATGT | 4 cut(s) | 1059, 2395, 3040, 3413 |
| PctI | GAATGC | 1 cut(s) | 188 |
| PfeI | GAWTC | 7 cut(s) | 137, 995, 1483, 1582, 2005, 2042, 2783 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 893 |
| PfoI | TCCNGGA | 1 cut(s) | 1053 |
| PinAI | ACCGGT | 1 cut(s) | 2829 |
| PkrI | GCNGC | 6 cut(s) | 212, 248, 266, 1401, 3105, 3146 |
| PleI | GAGTC | 7 cut(s) | 259, 670, 743, 777, 1620, 2374, 3121 |
| PpsI | GAGTC | 7 cut(s) | 259, 670, 743, 777, 1620, 2374, 3121 |
| PscI | ACATGT | 4 cut(s) | 1059, 2395, 3040, 3413 |
| Psp6I | CCWGG | 2 cut(s) | 1053, 2734 |
| PspEI | GGTNACC | 1 cut(s) | 938 |
| PspGI | CCWGG | 2 cut(s) | 1053, 2734 |
| PspN4I | GGNNCC | 8 cut(s) | 729, 871, 1017, 1462, 1740, 2293, 3224, 3291 |
| PspPI | GGNCC | 8 cut(s) | 650, 1391, 1564, 1708, 1852, 1987, 2631, 3290 |
| PspXI | VCTCGAGB | 1 cut(s) | 478 |
| PstNI | CAGNNNCTG | 1 cut(s) | 81 |
| PsuI | RGATCY | 3 cut(s) | 810, 3121, 3222 |
| PvuII | CAGCTG | 2 cut(s) | 1399, 3517 |
| RsaI | GTAC | 4 cut(s) | 178, 1740, 3259, 3473 |
| RsaNI | GTAC | 4 cut(s) | 177, 1739, 3258, 3472 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1455, 3192 |
| SatI | GCNGC | 6 cut(s) | 211, 247, 265, 1400, 3104, 3145 |
| Sau96I | GGNCC | 8 cut(s) | 650, 1391, 1564, 1708, 1852, 1987, 2631, 3290 |
| SchI | GAGTC | 7 cut(s) | 260, 671, 744, 778, 1621, 2374, 3122 |
| ScrFI | CCNGG | 2 cut(s) | 1055, 2736 |
| SfaNI | GCATC | 2 cut(s) | 960, 3090 |
| SfcI | CTRYAG | 1 cut(s) | 3475 |
| Sfr274I | CTCGAG | 1 cut(s) | 478 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2829 |
| SinI | GGWCC | 6 cut(s) | 1391, 1564, 1708, 1852, 1987, 2631 |
| SlaI | CTCGAG | 1 cut(s) | 478 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1455, 3192 |
| SmlI | CTYRAG | 9 cut(s) | 478, 965, 1534, 1957, 2173, 2353, 2453, 3139, 3349 |
| SmoI | CTYRAG | 9 cut(s) | 478, 965, 1534, 1957, 2173, 2353, 2453, 3139, 3349 |
| SsiI | CCGC | 5 cut(s) | 66, 1260, 3103, 3144, 3312 |
| SspMI | CTAG | 6 cut(s) | 2109, 2189, 2217, 2250, 2477, 2811 |
| StyD4I | CCNGG | 2 cut(s) | 1053, 2734 |
| StyI | CCWWGG | 4 cut(s) | 1653, 1797, 2076, 2797 |
| TaaI | ACNGT | 4 cut(s) | 83, 953, 1490, 2861 |
| TaiI | ACGT | 2 cut(s) | 988, 3580 |
| TaqI | TCGA | 6 cut(s) | 173, 479, 904, 1025, 1131, 2126 |
| TauI | GCSGC | 2 cut(s) | 3106, 3147 |
| TfiI | GAWTC | 7 cut(s) | 137, 995, 1483, 1582, 2005, 2042, 2783 |
| TscAI | CASTG | 6 cut(s) | 609, 1012, 1106, 1378, 2728, 3400 |
| TseFI | GTSAC | 4 cut(s) | 575, 938, 2237, 3438 |
| TseI | GCWGC | 4 cut(s) | 210, 246, 264, 1399 |
| Tsp45I | GTSAC | 4 cut(s) | 575, 938, 2237, 3438 |
| TspDTI | ATGAA | 7 cut(s) | 854, 1158, 1439, 1703, 1847, 2126, 2233 |
| TspGWI | ACGGA | 3 cut(s) | 1317, 2304, 3015 |
| TspRI | CASTG | 6 cut(s) | 609, 1012, 1106, 1378, 2728, 3400 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 893 |
| Vha464I | CTTAAG | 2 cut(s) | 965, 2173 |
| VpaK11BI | GGWCC | 6 cut(s) | 1391, 1564, 1708, 1852, 1987, 2631 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 481 |
| XapI | RAATTY | 9 cut(s) | 131, 169, 376, 391, 420, 496, 881, 1241, 3150 |
| XbaI | TCTAGA | 3 cut(s) | 2188, 2476, 2810 |
| XceI | RCATGY | 6 cut(s) | 1063, 1444, 2399, 3044, 3417, 3551 |
| XhoI | CTCGAG | 1 cut(s) | 478 |
| XmiI | GTMKAC | 1 cut(s) | 2221 |
| XspI | CTAG | 6 cut(s) | 2109, 2189, 2217, 2250, 2477, 2811 |