ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 244, 834 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 741 |
| AccI | GTMKAC | 1 cut(s) | 497 |
| AccII | CGCG | 1 cut(s) | 473 |
| AciI | CCGC | 2 cut(s) | 248, 473 |
| AcoI | YGGCCR | 2 cut(s) | 138, 853 |
| AcsI | RAATTY | 1 cut(s) | 313 |
| AcyI | GRCGYC | 1 cut(s) | 835 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 15, 98, 147, 168, 175, 741 |
| AgeI | ACCGGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 7 cut(s) | 98, 281, 311, 331, 349, 514, 529 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 658 |
| AjnI | CCWGG | 1 cut(s) | 418 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 103, 135 |
| AleI | CACNNNNGTG | 1 cut(s) | 446 |
| AluBI | AGCT | 1 cut(s) | 342 |
| AluI | AGCT | 1 cut(s) | 342 |
| Alw26I | GTCTC | 1 cut(s) | 178 |
| AoxI | GGCC | 5 cut(s) | 40, 138, 296, 432, 853 |
| ApeKI | GCWGC | 3 cut(s) | 104, 569, 860 |
| ApoI | RAATTY | 1 cut(s) | 313 |
| AsiGI | ACCGGT | 1 cut(s) | 238 |
| AspLEI | GCGC | 2 cut(s) | 473, 837 |
| AspS9I | GGNCC | 6 cut(s) | 40, 179, 296, 432, 646, 781 |
| AsuC2I | CCSGG | 1 cut(s) | 169 |
| AsuHPI | GGTGA | 3 cut(s) | 245, 433, 797 |
| AvaII | GGWCC | 3 cut(s) | 179, 646, 781 |
| AxyI | CCTNAGG | 1 cut(s) | 428 |
| BalI | TGGCCA | 1 cut(s) | 855 |
| BanI | GGYRCC | 2 cut(s) | 244, 834 |
| BbvI | GCAGC | 3 cut(s) | 116, 556, 847 |
| BccI | CCATC | 2 cut(s) | 446, 809 |
| BciT130I | CCWGG | 1 cut(s) | 420 |
| BcnI | CCSGG | 1 cut(s) | 169 |
| BcoDI | GTCTC | 1 cut(s) | 178 |
| BfaI | CTAG | 1 cut(s) | 731 |
| BfmI | CTRYAG | 1 cut(s) | 570 |
| BfoI | RGCGCY | 1 cut(s) | 838 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 843 |
| BisI | GCNGC | 5 cut(s) | 105, 248, 474, 570, 861 |
| BlsI | GCNGC | 5 cut(s) | 106, 249, 475, 571, 862 |
| Bme1390I | CCNGG | 2 cut(s) | 169, 420 |
| Bme18I | GGWCC | 3 cut(s) | 179, 646, 781 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 6 cut(s) | 40, 179, 296, 432, 646, 781 |
| BmrFI | CCNGG | 2 cut(s) | 169, 420 |
| BmsI | GCATC | 2 cut(s) | 443, 556 |
| BpuEI | CTTGAG | 1 cut(s) | 688 |
| BpuMI | CCSGG | 1 cut(s) | 169 |
| BsaHI | GRCGYC | 1 cut(s) | 835 |
| BsaJI | CCNNGG | 2 cut(s) | 444, 539 |
| BsaWI | WCCGGW | 4 cut(s) | 161, 238, 722, 821 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 15, 98, 147, 168, 175, 741 |
| Bse118I | RCCGGY | 4 cut(s) | 8, 91, 238, 250 |
| Bse21I | CCTNAGG | 1 cut(s) | 428 |
| Bse3DI | GCAATG | 1 cut(s) | 568 |
| BseBI | CCWGG | 1 cut(s) | 420 |
| BseDI | CCNNGG | 2 cut(s) | 444, 539 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 15, 98, 147, 168, 175, 741 |
| BseMI | GCAATG | 1 cut(s) | 568 |
| BseXI | GCAGC | 3 cut(s) | 116, 556, 847 |
| BseYI | CCCAGC | 1 cut(s) | 390 |
| BsgI | GTGCAG | 1 cut(s) | 123 |
| Bsh1236I | CGCG | 1 cut(s) | 473 |
| BshFI | GGCC | 5 cut(s) | 42, 140, 298, 434, 855 |
| BshNI | GGYRCC | 2 cut(s) | 244, 834 |
| BshTI | ACCGGT | 1 cut(s) | 238 |
| BsiSI | CCGG | 8 cut(s) | 9, 92, 162, 169, 239, 251, 723, 822 |
| BslFI | GGGAC | 4 cut(s) | 143, 192, 659, 729 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 15, 98, 147, 168, 175, 741 |
| BsmAI | GTCTC | 1 cut(s) | 178 |
| BsmBI | CGTCTC | 1 cut(s) | 178 |
| BsmFI | GGGAC | 4 cut(s) | 143, 192, 659, 729 |
| BsnI | GGCC | 5 cut(s) | 42, 140, 298, 434, 855 |
| BspACI | CCGC | 2 cut(s) | 248, 473 |
| BspANI | GGCC | 5 cut(s) | 42, 140, 298, 434, 855 |
| BspFNI | CGCG | 1 cut(s) | 473 |
| BspMAI | CTGCAG | 1 cut(s) | 574 |
| BspT107I | GGYRCC | 2 cut(s) | 244, 834 |
| BsrDI | GCAATG | 1 cut(s) | 568 |
| BsrFI | RCCGGY | 4 cut(s) | 8, 91, 238, 250 |
| BssAI | RCCGGY | 4 cut(s) | 8, 91, 238, 250 |
| BssECI | CCNNGG | 2 cut(s) | 444, 539 |
| BssNAI | GTATAC | 1 cut(s) | 498 |
| BssNI | GRCGYC | 1 cut(s) | 835 |
| BssT1I | CCWWGG | 2 cut(s) | 444, 539 |
| Bst1107I | GTATAC | 1 cut(s) | 498 |
| Bst2UI | CCWGG | 1 cut(s) | 420 |
| Bst4CI | ACNGT | 2 cut(s) | 484, 720 |
| BstACI | GRCGYC | 1 cut(s) | 835 |
| BstC8I | GCNNGC | 1 cut(s) | 469 |
| BstDEI | CTNAG | 2 cut(s) | 428, 870 |
| BstFNI | CGCG | 1 cut(s) | 473 |
| BstH2I | RGCGCY | 1 cut(s) | 838 |
| BstHHI | GCGC | 2 cut(s) | 473, 837 |
| BstMAI | GTCTC | 1 cut(s) | 178 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 473, 578, 843, 852, 866 |
| BstNI | CCWGG | 1 cut(s) | 420 |
| BstSCI | CCNGG | 2 cut(s) | 167, 418 |
| BstSFI | CTRYAG | 1 cut(s) | 570 |
| BstUI | CGCG | 1 cut(s) | 473 |
| BstV1I | GCAGC | 3 cut(s) | 116, 556, 847 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 445, 815 |
| BstZ17I | GTATAC | 1 cut(s) | 498 |
| Bsu36I | CCTNAGG | 1 cut(s) | 428 |
| BsuRI | GGCC | 5 cut(s) | 42, 140, 298, 434, 855 |
| BtgZI | GCGATG | 1 cut(s) | 466 |
| BtsIMutI | CAGTG | 1 cut(s) | 34 |
| Cac8I | GCNNGC | 1 cut(s) | 469 |
| CfoI | GCGC | 2 cut(s) | 473, 837 |
| Cfr10I | RCCGGY | 4 cut(s) | 8, 91, 238, 250 |
| Cfr13I | GGNCC | 6 cut(s) | 40, 179, 296, 432, 646, 781 |
| CseI | GACGC | 1 cut(s) | 195 |
| CspAI | ACCGGT | 1 cut(s) | 238 |
| CviAII | CATG | 3 cut(s) | 264, 736, 857 |
| DdeI | CTNAG | 2 cut(s) | 428, 870 |
| DinI | GGCGCC | 1 cut(s) | 836 |
| DriI | GACNNNNNGTC | 1 cut(s) | 658 |
| EaeI | YGGCCR | 2 cut(s) | 138, 853 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 658 |
| Eco130I | CCWWGG | 2 cut(s) | 444, 539 |
| Eco32I | GATATC | 1 cut(s) | 686 |
| Eco47I | GGWCC | 3 cut(s) | 179, 646, 781 |
| Eco81I | CCTNAGG | 1 cut(s) | 428 |
| EcoO109I | RGGNCCY | 1 cut(s) | 646 |
| EcoRII | CCWGG | 1 cut(s) | 418 |
| EcoRV | GATATC | 1 cut(s) | 686 |
| EcoT14I | CCWWGG | 2 cut(s) | 444, 539 |
| EgeI | GGCGCC | 1 cut(s) | 836 |
| EheI | GGCGCC | 1 cut(s) | 836 |
| ErhI | CCWWGG | 2 cut(s) | 444, 539 |
| Esp3I | CGTCTC | 1 cut(s) | 178 |
| FaeI | CATG | 3 cut(s) | 267, 739, 860 |
| FaiI | YATR | 9 cut(s) | 198, 265, 359, 498, 657, 659, 737, 852, 858 |
| FaqI | GGGAC | 4 cut(s) | 143, 192, 659, 729 |
| FatI | CATG | 3 cut(s) | 263, 735, 856 |
| FblI | GTMKAC | 1 cut(s) | 497 |
| Fnu4HI | GCNGC | 5 cut(s) | 105, 248, 474, 570, 861 |
| Fsp4HI | GCNGC | 5 cut(s) | 105, 248, 474, 570, 861 |
| FspBI | CTAG | 1 cut(s) | 731 |
| GlaI | GCGC | 2 cut(s) | 472, 836 |
| GluI | GCNGC | 5 cut(s) | 105, 248, 474, 570, 861 |
| GsaI | CCCAGC | 1 cut(s) | 394 |
| HaeII | RGCGCY | 1 cut(s) | 838 |
| HaeIII | GGCC | 5 cut(s) | 42, 140, 298, 434, 855 |
| HapII | CCGG | 8 cut(s) | 9, 92, 162, 169, 239, 251, 723, 822 |
| HgaI | GACGC | 1 cut(s) | 195 |
| HhaI | GCGC | 2 cut(s) | 473, 837 |
| Hin1I | GRCGYC | 1 cut(s) | 835 |
| Hin1II | CATG | 3 cut(s) | 267, 739, 860 |
| Hin6I | GCGC | 2 cut(s) | 471, 835 |
| HinP1I | GCGC | 2 cut(s) | 471, 835 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HinfI | GANTC | 7 cut(s) | 143, 260, 277, 327, 349, 604, 802 |
| HpaII | CCGG | 8 cut(s) | 9, 92, 162, 169, 239, 251, 723, 822 |
| HphI | GGTGA | 3 cut(s) | 245, 433, 797 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 236, 498, 728 |
| Hpy188I | TCNGA | 7 cut(s) | 326, 523, 664, 678, 690, 781, 814 |
| Hpy188III | TCNNGA | 4 cut(s) | 224, 257, 281, 346 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 236, 498, 728 |
| Hpy99I | CGWCG | 1 cut(s) | 868 |
| HpyAV | CCTTC | 6 cut(s) | 53, 221, 263, 523, 621, 739 |
| HpyCH4III | ACNGT | 2 cut(s) | 484, 720 |
| HpyCH4IV | ACGT | 1 cut(s) | 759 |
| HpyCH4V | TGCA | 3 cut(s) | 104, 549, 572 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 473, 578, 843, 852, 866 |
| HpyF3I | CTNAG | 2 cut(s) | 428, 870 |
| HpySE526I | ACGT | 1 cut(s) | 759 |
| Hsp92I | GRCGYC | 1 cut(s) | 835 |
| Hsp92II | CATG | 3 cut(s) | 267, 739, 860 |
| HspAI | GCGC | 2 cut(s) | 471, 835 |
| KasI | GGCGCC | 1 cut(s) | 834 |
| KflI | GGGWCCC | 1 cut(s) | 646 |
| LmnI | GCTCC | 1 cut(s) | 481 |
| Lsp1109I | GCAGC | 3 cut(s) | 116, 556, 847 |
| LweI | GCATC | 2 cut(s) | 443, 556 |
| MaeI | CTAG | 1 cut(s) | 731 |
| MaeII | ACGT | 1 cut(s) | 759 |
| MboII | GAAGA | 5 cut(s) | 43, 54, 57, 65, 68 |
| MfeI | CAATTG | 1 cut(s) | 213 |
| MlsI | TGGCCA | 1 cut(s) | 855 |
| MluCI | AATT | 7 cut(s) | 153, 202, 213, 313, 408, 544, 691 |
| MluNI | TGGCCA | 1 cut(s) | 855 |
| Mly113I | GGCGCC | 1 cut(s) | 835 |
| MnlI | CCTC | 2 cut(s) | 127, 663 |
| Mox20I | TGGCCA | 1 cut(s) | 855 |
| MscI | TGGCCA | 1 cut(s) | 855 |
| MslI | CAYNNNNRTG | 3 cut(s) | 446, 792, 813 |
| Msp20I | TGGCCA | 1 cut(s) | 855 |
| MspI | CCGG | 8 cut(s) | 9, 92, 162, 169, 239, 251, 723, 822 |
| MspR9I | CCNGG | 2 cut(s) | 169, 420 |
| MunI | CAATTG | 1 cut(s) | 213 |
| MvaI | CCWGG | 1 cut(s) | 420 |
| MvnI | CGCG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 473, 578, 843, 852, 866 |
| NarI | GGCGCC | 1 cut(s) | 835 |
| NciI | CCSGG | 1 cut(s) | 169 |
| NlaIII | CATG | 3 cut(s) | 267, 739, 860 |
| OliI | CACNNNNGTG | 1 cut(s) | 446 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 138 |
| PfeI | GAWTC | 7 cut(s) | 143, 260, 277, 327, 349, 604, 802 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 741 |
| PfoI | TCCNGGA | 2 cut(s) | 167, 418 |
| PinAI | ACCGGT | 1 cut(s) | 238 |
| PkrI | GCNGC | 5 cut(s) | 106, 249, 475, 571, 862 |
| PluTI | GGCGCC | 1 cut(s) | 838 |
| PpuMI | RGGWCCY | 1 cut(s) | 646 |
| Psp5II | RGGWCCY | 1 cut(s) | 646 |
| Psp6I | CCWGG | 1 cut(s) | 418 |
| PspFI | CCCAGC | 1 cut(s) | 390 |
| PspGI | CCWGG | 1 cut(s) | 418 |
| PspPI | GGNCC | 6 cut(s) | 40, 179, 296, 432, 646, 781 |
| PspPPI | RGGWCCY | 1 cut(s) | 646 |
| PstI | CTGCAG | 1 cut(s) | 574 |
| RseI | CAYNNNNRTG | 3 cut(s) | 446, 792, 813 |
| SatI | GCNGC | 5 cut(s) | 105, 248, 474, 570, 861 |
| Sau96I | GGNCC | 6 cut(s) | 40, 179, 296, 432, 646, 781 |
| ScrFI | CCNGG | 2 cut(s) | 169, 420 |
| SfaNI | GCATC | 2 cut(s) | 443, 556 |
| SfcI | CTRYAG | 1 cut(s) | 570 |
| SfoI | GGCGCC | 1 cut(s) | 836 |
| SinI | GGWCC | 3 cut(s) | 179, 646, 781 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 446, 792, 813 |
| SmlI | CTYRAG | 1 cut(s) | 667 |
| SmoI | CTYRAG | 1 cut(s) | 667 |
| Sse9I | AATT | 7 cut(s) | 153, 202, 213, 313, 408, 544, 691 |
| SsiI | CCGC | 2 cut(s) | 248, 473 |
| SspDI | GGCGCC | 1 cut(s) | 834 |
| SspMI | CTAG | 1 cut(s) | 731 |
| StyD4I | CCNGG | 2 cut(s) | 167, 418 |
| StyI | CCWWGG | 2 cut(s) | 444, 539 |
| TaaI | ACNGT | 2 cut(s) | 484, 720 |
| TaiI | ACGT | 1 cut(s) | 762 |
| TaqII | GACCGA | 1 cut(s) | 196 |
| TasI | AATT | 7 cut(s) | 153, 202, 213, 313, 408, 544, 691 |
| TauI | GCSGC | 2 cut(s) | 250, 476 |
| TfiI | GAWTC | 7 cut(s) | 143, 260, 277, 327, 349, 604, 802 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TseI | GCWGC | 3 cut(s) | 104, 569, 860 |
| TspDTI | ATGAA | 2 cut(s) | 252, 420 |
| TspRI | CASTG | 1 cut(s) | 34 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 741 |
| VpaK11BI | GGWCC | 3 cut(s) | 179, 646, 781 |
| XapI | RAATTY | 1 cut(s) | 313 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 442 |
| XmiI | GTMKAC | 1 cut(s) | 497 |
| XspI | CTAG | 1 cut(s) | 731 |