ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 514 |
| AccI | GTMKAC | 1 cut(s) | 122 |
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 1 cut(s) | 535 |
| AcoI | YGGCCR | 2 cut(s) | 462, 526 |
| AcvI | CACGTG | 2 cut(s) | 228, 500 |
| AcyI | GRCGYC | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 23, 270, 420, 460, 524 |
| AflIII | ACRYGT | 1 cut(s) | 499 |
| AgsI | TTSAA | 1 cut(s) | 490 |
| AjiI | CACGTC | 1 cut(s) | 338 |
| AjnI | CCWGG | 3 cut(s) | 173, 419, 473 |
| AluBI | AGCT | 2 cut(s) | 22, 408 |
| AluI | AGCT | 2 cut(s) | 22, 408 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| AlwI | GGATC | 1 cut(s) | 535 |
| Ama87I | CYCGRG | 1 cut(s) | 163 |
| AoxI | GGCC | 2 cut(s) | 462, 526 |
| ApeKI | GCWGC | 3 cut(s) | 19, 152, 352 |
| AspLEI | GCGC | 1 cut(s) | 517 |
| AspS9I | GGNCC | 1 cut(s) | 451 |
| AsuC2I | CCSGG | 2 cut(s) | 362, 432 |
| AsuHPI | GGTGA | 5 cut(s) | 217, 263, 289, 296, 409 |
| AvaI | CYCGRG | 1 cut(s) | 163 |
| AvaII | GGWCC | 1 cut(s) | 451 |
| BalI | TGGCCA | 2 cut(s) | 464, 528 |
| BanI | GGYRCC | 1 cut(s) | 514 |
| BbrPI | CACGTG | 2 cut(s) | 228, 500 |
| BbvI | GCAGC | 3 cut(s) | 31, 139, 364 |
| BccI | CCATC | 1 cut(s) | 135 |
| BceAI | ACGGC | 3 cut(s) | 175, 225, 510 |
| BciT130I | CCWGG | 3 cut(s) | 175, 421, 475 |
| BcnI | CCSGG | 2 cut(s) | 362, 432 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BfaI | CTAG | 2 cut(s) | 23, 395 |
| BfoI | RGCGCY | 1 cut(s) | 518 |
| BisI | GCNGC | 3 cut(s) | 20, 153, 353 |
| BlsI | GCNGC | 3 cut(s) | 21, 154, 354 |
| Bme1390I | CCNGG | 5 cut(s) | 175, 362, 421, 432, 475 |
| Bme18I | GGWCC | 1 cut(s) | 451 |
| BmeT110I | CYCGRG | 1 cut(s) | 163 |
| BmgBI | CACGTC | 1 cut(s) | 338 |
| BmgT120I | GGNCC | 1 cut(s) | 451 |
| BmiI | GGNNCC | 1 cut(s) | 516 |
| BmrFI | CCNGG | 5 cut(s) | 175, 362, 421, 432, 475 |
| BmrI | ACTGGG | 1 cut(s) | 195 |
| BmsI | GCATC | 1 cut(s) | 317 |
| BmuI | ACTGGG | 1 cut(s) | 195 |
| BpmI | CTGGAG | 1 cut(s) | 196 |
| BpuMI | CCSGG | 2 cut(s) | 362, 432 |
| Bsa29I | ATCGAT | 2 cut(s) | 135, 390 |
| BsaAI | YACGTR | 2 cut(s) | 228, 500 |
| BsaHI | GRCGYC | 1 cut(s) | 515 |
| BsaI | GGTCTC | 1 cut(s) | 421 |
| BsaJI | CCNNGG | 3 cut(s) | 269, 431, 523 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 23, 270, 420, 460, 524 |
| Bse1I | ACTGG | 2 cut(s) | 190, 453 |
| Bse3DI | GCAATG | 1 cut(s) | 465 |
| BseBI | CCWGG | 3 cut(s) | 175, 421, 475 |
| BseCI | ATCGAT | 2 cut(s) | 135, 390 |
| BseDI | CCNNGG | 3 cut(s) | 269, 431, 523 |
| BseGI | GGATG | 3 cut(s) | 106, 370, 441 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 23, 270, 420, 460, 524 |
| BseMI | GCAATG | 1 cut(s) | 465 |
| BseNI | ACTGG | 2 cut(s) | 190, 453 |
| BseRI | GAGGAG | 2 cut(s) | 269, 454 |
| BseXI | GCAGC | 3 cut(s) | 31, 139, 364 |
| Bsh1285I | CGRYCG | 1 cut(s) | 17 |
| BshFI | GGCC | 2 cut(s) | 464, 528 |
| BshNI | GGYRCC | 1 cut(s) | 514 |
| BshVI | ATCGAT | 2 cut(s) | 135, 390 |
| BsiEI | CGRYCG | 1 cut(s) | 17 |
| BsiHKCI | CYCGRG | 1 cut(s) | 163 |
| BsiSI | CCGG | 2 cut(s) | 361, 431 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 23, 270, 420, 460, 524 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| BsnI | GGCC | 2 cut(s) | 464, 528 |
| Bso31I | GGTCTC | 1 cut(s) | 421 |
| BsoBI | CYCGRG | 1 cut(s) | 163 |
| Bsp143I | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| Bsp19I | CCATGG | 2 cut(s) | 269, 523 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspANI | GGCC | 2 cut(s) | 464, 528 |
| BspDI | ATCGAT | 2 cut(s) | 135, 390 |
| BspLI | GGNNCC | 1 cut(s) | 516 |
| BspPI | GGATC | 1 cut(s) | 535 |
| BspT107I | GGYRCC | 1 cut(s) | 514 |
| BspTNI | GGTCTC | 1 cut(s) | 421 |
| BsrDI | GCAATG | 1 cut(s) | 465 |
| BsrI | ACTGG | 2 cut(s) | 190, 453 |
| BssECI | CCNNGG | 3 cut(s) | 269, 431, 523 |
| BssMI | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| BssNI | GRCGYC | 1 cut(s) | 515 |
| BssT1I | CCWWGG | 2 cut(s) | 269, 523 |
| Bst2UI | CCWGG | 3 cut(s) | 175, 421, 475 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 455 |
| Bst6I | CTCTTC | 1 cut(s) | 419 |
| BstACI | GRCGYC | 1 cut(s) | 515 |
| BstBAI | YACGTR | 2 cut(s) | 228, 500 |
| BstDSI | CCRYGG | 2 cut(s) | 269, 523 |
| BstF5I | GGATG | 3 cut(s) | 106, 370, 441 |
| BstH2I | RGCGCY | 1 cut(s) | 518 |
| BstHHI | GCGC | 1 cut(s) | 517 |
| BstKTI | GATC | 5 cut(s) | 282, 385, 390, 394, 543 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMBI | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| BstMCI | CGRYCG | 1 cut(s) | 17 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 19, 25 |
| BstNI | CCWGG | 3 cut(s) | 175, 421, 475 |
| BstSCI | CCNGG | 5 cut(s) | 173, 360, 419, 430, 473 |
| BstV1I | GCAGC | 3 cut(s) | 31, 139, 364 |
| Bsu15I | ATCGAT | 2 cut(s) | 135, 390 |
| BsuRI | GGCC | 2 cut(s) | 464, 528 |
| BsuTUI | ATCGAT | 2 cut(s) | 135, 390 |
| BtgI | CCRYGG | 2 cut(s) | 269, 523 |
| BtrI | CACGTC | 1 cut(s) | 338 |
| BtsCI | GGATG | 3 cut(s) | 106, 370, 441 |
| CfoI | GCGC | 1 cut(s) | 517 |
| Cfr13I | GGNCC | 1 cut(s) | 451 |
| ClaI | ATCGAT | 2 cut(s) | 135, 390 |
| CseI | GACGC | 1 cut(s) | 494 |
| CsiI | ACCWGGT | 1 cut(s) | 473 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 460, 495 |
| CviAII | CATG | 4 cut(s) | 79, 270, 524, 533 |
| DinI | GGCGCC | 1 cut(s) | 516 |
| DpnI | GATC | 5 cut(s) | 281, 384, 389, 393, 542 |
| DpnII | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| EaeI | YGGCCR | 2 cut(s) | 462, 526 |
| Eam1104I | CTCTTC | 1 cut(s) | 419 |
| EarI | CTCTTC | 1 cut(s) | 419 |
| Eco130I | CCWWGG | 2 cut(s) | 269, 523 |
| Eco31I | GGTCTC | 1 cut(s) | 421 |
| Eco32I | GATATC | 1 cut(s) | 484 |
| Eco47I | GGWCC | 1 cut(s) | 451 |
| Eco72I | CACGTG | 2 cut(s) | 228, 500 |
| Eco88I | CYCGRG | 1 cut(s) | 163 |
| EcoRII | CCWGG | 3 cut(s) | 173, 419, 473 |
| EcoRV | GATATC | 1 cut(s) | 484 |
| EcoT14I | CCWWGG | 2 cut(s) | 269, 523 |
| EcoT22I | ATGCAT | 1 cut(s) | 310 |
| EgeI | GGCGCC | 1 cut(s) | 516 |
| EheI | GGCGCC | 1 cut(s) | 516 |
| ErhI | CCWWGG | 2 cut(s) | 269, 523 |
| FaeI | CATG | 4 cut(s) | 82, 273, 527, 536 |
| FaiI | YATR | 9 cut(s) | 80, 170, 271, 290, 304, 306, 525, 534, 568 |
| FatI | CATG | 4 cut(s) | 78, 269, 523, 532 |
| FblI | GTMKAC | 1 cut(s) | 122 |
| Fnu4HI | GCNGC | 3 cut(s) | 20, 153, 353 |
| FokI | GGATG | 3 cut(s) | 113, 377, 448 |
| Fsp4HI | GCNGC | 3 cut(s) | 20, 153, 353 |
| FspBI | CTAG | 2 cut(s) | 23, 395 |
| GlaI | GCGC | 1 cut(s) | 516 |
| GluI | GCNGC | 3 cut(s) | 20, 153, 353 |
| GsuI | CTGGAG | 1 cut(s) | 196 |
| HaeII | RGCGCY | 1 cut(s) | 518 |
| HaeIII | GGCC | 2 cut(s) | 464, 528 |
| HapII | CCGG | 2 cut(s) | 361, 431 |
| HgaI | GACGC | 1 cut(s) | 494 |
| HhaI | GCGC | 1 cut(s) | 517 |
| Hin1I | GRCGYC | 1 cut(s) | 515 |
| Hin1II | CATG | 4 cut(s) | 82, 273, 527, 536 |
| Hin6I | GCGC | 1 cut(s) | 515 |
| HinP1I | GCGC | 1 cut(s) | 515 |
| HpaII | CCGG | 2 cut(s) | 361, 431 |
| HphI | GGTGA | 5 cut(s) | 217, 263, 289, 296, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 387 |
| Hpy188III | TCNNGA | 1 cut(s) | 490 |
| Hpy8I | GTNNAC | 1 cut(s) | 123 |
| Hpy99I | CGWCG | 1 cut(s) | 339 |
| HpyAV | CCTTC | 2 cut(s) | 310, 424 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 455 |
| HpyCH4IV | ACGT | 3 cut(s) | 227, 337, 499 |
| HpyCH4V | TGCA | 3 cut(s) | 308, 352, 458 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 19, 25 |
| HpySE526I | ACGT | 3 cut(s) | 227, 337, 499 |
| Hsp92I | GRCGYC | 1 cut(s) | 515 |
| Hsp92II | CATG | 4 cut(s) | 82, 273, 527, 536 |
| HspAI | GCGC | 1 cut(s) | 515 |
| KasI | GGCGCC | 1 cut(s) | 514 |
| Kzo9I | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| LmnI | GCTCC | 1 cut(s) | 441 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 139, 364 |
| LweI | GCATC | 1 cut(s) | 317 |
| MabI | ACCWGGT | 1 cut(s) | 473 |
| MaeI | CTAG | 2 cut(s) | 23, 395 |
| MaeII | ACGT | 3 cut(s) | 227, 337, 499 |
| MaeIII | GTNAC | 1 cut(s) | 205 |
| MalI | GATC | 5 cut(s) | 281, 384, 389, 393, 542 |
| MboI | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| MboII | GAAGA | 3 cut(s) | 325, 436, 478 |
| MlsI | TGGCCA | 2 cut(s) | 464, 528 |
| MluCI | AATT | 1 cut(s) | 34 |
| MluNI | TGGCCA | 2 cut(s) | 464, 528 |
| Mly113I | GGCGCC | 1 cut(s) | 515 |
| MnlI | CCTC | 5 cut(s) | 49, 247, 313, 317, 432 |
| Mox20I | TGGCCA | 2 cut(s) | 464, 528 |
| Mph1103I | ATGCAT | 1 cut(s) | 310 |
| MscI | TGGCCA | 2 cut(s) | 464, 528 |
| MslI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| Msp20I | TGGCCA | 2 cut(s) | 464, 528 |
| MspI | CCGG | 2 cut(s) | 361, 431 |
| MspR9I | CCNGG | 5 cut(s) | 175, 362, 421, 432, 475 |
| MvaI | CCWGG | 3 cut(s) | 175, 421, 475 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 19, 25 |
| NarI | GGCGCC | 1 cut(s) | 515 |
| NciI | CCSGG | 2 cut(s) | 362, 432 |
| NcoI | CCATGG | 2 cut(s) | 269, 523 |
| NdeII | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| NlaIII | CATG | 4 cut(s) | 82, 273, 527, 536 |
| NlaIV | GGNNCC | 1 cut(s) | 516 |
| NmuCI | GTSAC | 1 cut(s) | 205 |
| NsiI | ATGCAT | 1 cut(s) | 310 |
| PfoI | TCCNGGA | 1 cut(s) | 360 |
| PkrI | GCNGC | 3 cut(s) | 21, 154, 354 |
| PluTI | GGCGCC | 1 cut(s) | 518 |
| PmaCI | CACGTG | 2 cut(s) | 228, 500 |
| PmlI | CACGTG | 2 cut(s) | 228, 500 |
| Ppu21I | YACGTR | 2 cut(s) | 228, 500 |
| Psp6I | CCWGG | 3 cut(s) | 173, 419, 473 |
| PspCI | CACGTG | 2 cut(s) | 228, 500 |
| PspGI | CCWGG | 3 cut(s) | 173, 419, 473 |
| PspN4I | GGNNCC | 1 cut(s) | 516 |
| PspPI | GGNCC | 1 cut(s) | 451 |
| RseI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| SatI | GCNGC | 3 cut(s) | 20, 153, 353 |
| Sau3AI | GATC | 5 cut(s) | 279, 382, 387, 391, 540 |
| Sau96I | GGNCC | 1 cut(s) | 451 |
| ScrFI | CCNGG | 5 cut(s) | 175, 362, 421, 432, 475 |
| SetI | ASST | 7 cut(s) | 24, 230, 340, 410, 422, 476, 502 |
| SexAI | ACCWGGT | 1 cut(s) | 473 |
| SfaNI | GCATC | 1 cut(s) | 317 |
| SfoI | GGCGCC | 1 cut(s) | 516 |
| SinI | GGWCC | 1 cut(s) | 451 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| Sse9I | AATT | 1 cut(s) | 34 |
| SsiI | CCGC | 1 cut(s) | 17 |
| SspDI | GGCGCC | 1 cut(s) | 514 |
| SspMI | CTAG | 2 cut(s) | 23, 395 |
| StyD4I | CCNGG | 5 cut(s) | 173, 360, 419, 430, 473 |
| StyI | CCWWGG | 2 cut(s) | 269, 523 |
| TaaI | ACNGT | 2 cut(s) | 8, 455 |
| TaiI | ACGT | 3 cut(s) | 230, 340, 502 |
| TaqI | TCGA | 4 cut(s) | 116, 135, 311, 390 |
| TasI | AATT | 1 cut(s) | 34 |
| TseFI | GTSAC | 1 cut(s) | 205 |
| TseI | GCWGC | 3 cut(s) | 19, 152, 352 |
| Tsp45I | GTSAC | 1 cut(s) | 205 |
| TspDTI | ATGAA | 3 cut(s) | 17, 305, 391 |
| TspGWI | ACGGA | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 1 cut(s) | 451 |
| XmiI | GTMKAC | 1 cut(s) | 122 |
| XspI | CTAG | 2 cut(s) | 23, 395 |
| Zsp2I | ATGCAT | 1 cut(s) | 310 |