ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 120 - 203 | 6.1e-10 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 539 |
| Acc36I | ACCTGC | 2 cut(s) | 35, 539 |
| AciI | CCGC | 3 cut(s) | 209, 212, 509 |
| AclI | AACGTT | 1 cut(s) | 77 |
| AcsI | RAATTY | 1 cut(s) | 557 |
| AfaI | GTAC | 1 cut(s) | 49 |
| AgsI | TTSAA | 3 cut(s) | 29, 170, 430 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| AoxI | GGCC | 1 cut(s) | 564 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| ApoI | RAATTY | 1 cut(s) | 557 |
| AspLEI | GCGC | 1 cut(s) | 248 |
| AsuC2I | CCSGG | 1 cut(s) | 480 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 180, 563 |
| AsuII | TTCGAA | 1 cut(s) | 407 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 2 cut(s) | 7, 194 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 480 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BfuAI | ACCTGC | 2 cut(s) | 35, 539 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BisI | GCNGC | 4 cut(s) | 209, 212, 261, 510 |
| BlsI | GCNGC | 4 cut(s) | 210, 213, 262, 511 |
| Bme1390I | CCNGG | 1 cut(s) | 480 |
| BmrFI | CCNGG | 1 cut(s) | 480 |
| BmrI | ACTGGG | 1 cut(s) | 127 |
| BmsI | GCATC | 1 cut(s) | 376 |
| BmuI | ACTGGG | 1 cut(s) | 127 |
| Bpu14I | TTCGAA | 1 cut(s) | 407 |
| BpuMI | CCSGG | 1 cut(s) | 480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 366 |
| BsaI | GGTCTC | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 2 cut(s) | 333, 354 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 149, 179 |
| Bse1I | ACTGG | 2 cut(s) | 133, 579 |
| Bse8I | GATNNNNATC | 1 cut(s) | 366 |
| BseDI | CCNNGG | 2 cut(s) | 333, 354 |
| BseGI | GGATG | 2 cut(s) | 205, 367 |
| BseJI | GATNNNNATC | 1 cut(s) | 366 |
| BseMII | CTCAG | 2 cut(s) | 339, 458 |
| BseNI | ACTGG | 2 cut(s) | 133, 579 |
| BseRI | GAGGAG | 2 cut(s) | 122, 161 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BshFI | GGCC | 1 cut(s) | 566 |
| BsiSI | CCGG | 2 cut(s) | 197, 480 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsmI | GAATGC | 1 cut(s) | 210 |
| BsnI | GGCC | 1 cut(s) | 566 |
| Bso31I | GGTCTC | 1 cut(s) | 344 |
| Bsp119I | TTCGAA | 1 cut(s) | 407 |
| Bsp19I | CCATGG | 1 cut(s) | 354 |
| BspACI | CCGC | 3 cut(s) | 209, 212, 509 |
| BspANI | GGCC | 1 cut(s) | 566 |
| BspCNI | CTCAG | 2 cut(s) | 340, 457 |
| BspMI | ACCTGC | 2 cut(s) | 35, 539 |
| BspT104I | TTCGAA | 1 cut(s) | 407 |
| BspTNI | GGTCTC | 1 cut(s) | 344 |
| BsrI | ACTGG | 2 cut(s) | 133, 579 |
| BssECI | CCNNGG | 2 cut(s) | 333, 354 |
| BssT1I | CCWWGG | 1 cut(s) | 354 |
| Bst4CI | ACNGT | 2 cut(s) | 337, 599 |
| BstBI | TTCGAA | 1 cut(s) | 407 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 2 cut(s) | 348, 444 |
| BstDSI | CCRYGG | 2 cut(s) | 333, 354 |
| BstF5I | GGATG | 2 cut(s) | 205, 367 |
| BstHHI | GCGC | 1 cut(s) | 248 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstSCI | CCNGG | 1 cut(s) | 478 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 1 cut(s) | 566 |
| BtgI | CCRYGG | 2 cut(s) | 333, 354 |
| BtsCI | GGATG | 2 cut(s) | 205, 367 |
| BveI | ACCTGC | 2 cut(s) | 35, 539 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CfoI | GCGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 1 cut(s) | 48 |
| CviAII | CATG | 2 cut(s) | 355, 562 |
| CviJI | RGCY | 5 cut(s) | 65, 86, 512, 566, 590 |
| CviKI_1 | RGCY | 5 cut(s) | 65, 86, 512, 566, 590 |
| CviQI | GTAC | 1 cut(s) | 48 |
| DdeI | CTNAG | 2 cut(s) | 348, 444 |
| Eco130I | CCWWGG | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 1 cut(s) | 344 |
| EcoRI | GAATTC | 1 cut(s) | 557 |
| EcoT14I | CCWWGG | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 354 |
| FaeI | CATG | 2 cut(s) | 358, 565 |
| FatI | CATG | 2 cut(s) | 354, 561 |
| Fnu4HI | GCNGC | 4 cut(s) | 209, 212, 261, 510 |
| FokI | GGATG | 2 cut(s) | 212, 354 |
| Fsp4HI | GCNGC | 4 cut(s) | 209, 212, 261, 510 |
| FspBI | CTAG | 1 cut(s) | 192 |
| GlaI | GCGC | 1 cut(s) | 247 |
| GluI | GCNGC | 4 cut(s) | 209, 212, 261, 510 |
| HaeIII | GGCC | 1 cut(s) | 566 |
| HapII | CCGG | 2 cut(s) | 197, 480 |
| HhaI | GCGC | 1 cut(s) | 248 |
| Hin1II | CATG | 2 cut(s) | 358, 565 |
| Hin6I | GCGC | 1 cut(s) | 246 |
| HinP1I | GCGC | 1 cut(s) | 246 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HinfI | GANTC | 3 cut(s) | 5, 328, 486 |
| HpaII | CCGG | 2 cut(s) | 197, 480 |
| HphI | GGTGA | 3 cut(s) | 163, 180, 563 |
| Hpy166II | GTNNAC | 1 cut(s) | 340 |
| Hpy188I | TCNGA | 2 cut(s) | 447, 465 |
| Hpy8I | GTNNAC | 1 cut(s) | 340 |
| HpyAV | CCTTC | 2 cut(s) | 105, 148 |
| HpyCH4III | ACNGT | 2 cut(s) | 337, 599 |
| HpyCH4IV | ACGT | 1 cut(s) | 77 |
| HpyCH4V | TGCA | 3 cut(s) | 82, 280, 367 |
| HpyF3I | CTNAG | 2 cut(s) | 348, 444 |
| HpySE526I | ACGT | 1 cut(s) | 77 |
| Hsp92II | CATG | 2 cut(s) | 358, 565 |
| HspAI | GCGC | 1 cut(s) | 246 |
| LpnPI | CCDG | 8 cut(s) | 30, 68, 146, 210, 360, 493, 534, 560 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| LweI | GCATC | 1 cut(s) | 376 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeII | ACGT | 1 cut(s) | 77 |
| MaeIII | GTNAC | 3 cut(s) | 100, 186, 291 |
| MluCI | AATT | 4 cut(s) | 19, 271, 303, 557 |
| MlyI | GAGTC | 1 cut(s) | 480 |
| MmeI | TCCRAC | 1 cut(s) | 247 |
| MnlI | CCTC | 8 cut(s) | 55, 64, 100, 139, 142, 151, 453, 547 |
| MseI | TTAA | 3 cut(s) | 297, 306, 569 |
| MspI | CCGG | 2 cut(s) | 197, 480 |
| MspR9I | CCNGG | 1 cut(s) | 480 |
| Mva1269I | GAATGC | 1 cut(s) | 210 |
| NciI | CCSGG | 1 cut(s) | 480 |
| NcoI | CCATGG | 1 cut(s) | 354 |
| NlaIII | CATG | 2 cut(s) | 358, 565 |
| NmuCI | GTSAC | 1 cut(s) | 186 |
| NspV | TTCGAA | 1 cut(s) | 407 |
| PaqCI | CACCTGC | 1 cut(s) | 539 |
| PctI | GAATGC | 1 cut(s) | 210 |
| PfeI | GAWTC | 2 cut(s) | 5, 328 |
| PkrI | GCNGC | 4 cut(s) | 210, 213, 262, 511 |
| PleI | GAGTC | 1 cut(s) | 480 |
| PpsI | GAGTC | 1 cut(s) | 480 |
| Psp1406I | AACGTT | 1 cut(s) | 77 |
| RsaI | GTAC | 1 cut(s) | 49 |
| RsaNI | GTAC | 1 cut(s) | 48 |
| SaqAI | TTAA | 3 cut(s) | 297, 306, 569 |
| SatI | GCNGC | 4 cut(s) | 209, 212, 261, 510 |
| SchI | GAGTC | 1 cut(s) | 480 |
| ScrFI | CCNGG | 1 cut(s) | 480 |
| SetI | ASST | 5 cut(s) | 49, 80, 153, 193, 553 |
| SfaNI | GCATC | 1 cut(s) | 376 |
| SfuI | TTCGAA | 1 cut(s) | 407 |
| Sse9I | AATT | 4 cut(s) | 19, 271, 303, 557 |
| SsiI | CCGC | 3 cut(s) | 209, 212, 509 |
| SspMI | CTAG | 1 cut(s) | 192 |
| StyD4I | CCNGG | 1 cut(s) | 478 |
| StyI | CCWWGG | 1 cut(s) | 354 |
| TaaI | ACNGT | 2 cut(s) | 337, 599 |
| TaiI | ACGT | 1 cut(s) | 80 |
| TaqI | TCGA | 1 cut(s) | 407 |
| TasI | AATT | 4 cut(s) | 19, 271, 303, 557 |
| TauI | GCSGC | 3 cut(s) | 211, 214, 512 |
| TfiI | GAWTC | 2 cut(s) | 5, 328 |
| Tru1I | TTAA | 3 cut(s) | 297, 306, 569 |
| Tru9I | TTAA | 3 cut(s) | 297, 306, 569 |
| TseFI | GTSAC | 1 cut(s) | 186 |
| TseI | GCWGC | 1 cut(s) | 260 |
| Tsp45I | GTSAC | 1 cut(s) | 186 |
| TspDTI | ATGAA | 5 cut(s) | 128, 257, 463, 524, 550 |
| TspGWI | ACGGA | 2 cut(s) | 74, 119 |
| XapI | RAATTY | 1 cut(s) | 557 |
| XspI | CTAG | 1 cut(s) | 192 |