ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 95 |
| Acc65I | GGTACC | 1 cut(s) | 398 |
| AccB1I | GGYRCC | 1 cut(s) | 398 |
| AccBSI | CCGCTC | 1 cut(s) | 322 |
| AciI | CCGC | 1 cut(s) | 320 |
| AclI | AACGTT | 1 cut(s) | 110 |
| AclWI | GGATC | 2 cut(s) | 381, 498 |
| AcsI | RAATTY | 2 cut(s) | 418, 495 |
| AcuI | CTGAAG | 1 cut(s) | 534 |
| AfaI | GTAC | 3 cut(s) | 400, 469, 633 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 261, 262, 265 |
| AgsI | TTSAA | 1 cut(s) | 232 |
| AjnI | CCWGG | 4 cut(s) | 151, 164, 194, 378 |
| AluBI | AGCT | 5 cut(s) | 189, 518, 563, 695, 709 |
| AluI | AGCT | 5 cut(s) | 189, 518, 563, 695, 709 |
| Alw21I | GWGCWC | 1 cut(s) | 697 |
| Alw26I | GTCTC | 2 cut(s) | 163, 419 |
| AlwI | GGATC | 2 cut(s) | 381, 498 |
| AoxI | GGCC | 2 cut(s) | 61, 357 |
| ApeKI | GCWGC | 1 cut(s) | 670 |
| ApoI | RAATTY | 2 cut(s) | 418, 495 |
| Asp718I | GGTACC | 1 cut(s) | 398 |
| AspA2I | CCTAGG | 2 cut(s) | 64, 385 |
| AspLEI | GCGC | 1 cut(s) | 13 |
| AspS9I | GGNCC | 2 cut(s) | 317, 382 |
| AsuHPI | GGTGA | 3 cut(s) | 110, 314, 595 |
| AvaII | GGWCC | 2 cut(s) | 317, 382 |
| AvrII | CCTAGG | 2 cut(s) | 64, 385 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BanI | GGYRCC | 1 cut(s) | 398 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| Bbv12I | GWGCWC | 1 cut(s) | 697 |
| BbvI | GCAGC | 1 cut(s) | 682 |
| BccI | CCATC | 4 cut(s) | 41, 94, 308, 710 |
| BceAI | ACGGC | 1 cut(s) | 145 |
| BciT130I | CCWGG | 4 cut(s) | 153, 166, 196, 380 |
| BclI | TGATCA | 1 cut(s) | 439 |
| BcoDI | GTCTC | 2 cut(s) | 163, 419 |
| BfaI | CTAG | 4 cut(s) | 14, 65, 386, 635 |
| BfmI | CTRYAG | 1 cut(s) | 184 |
| BfoI | RGCGCY | 1 cut(s) | 14 |
| BglII | AGATCT | 1 cut(s) | 288 |
| BisI | GCNGC | 1 cut(s) | 671 |
| BlnI | CCTAGG | 2 cut(s) | 64, 385 |
| BlsI | GCNGC | 1 cut(s) | 672 |
| Bme1390I | CCNGG | 4 cut(s) | 153, 166, 196, 380 |
| Bme18I | GGWCC | 2 cut(s) | 317, 382 |
| BmgT120I | GGNCC | 2 cut(s) | 317, 382 |
| BmiI | GGNNCC | 2 cut(s) | 400, 527 |
| BmrFI | CCNGG | 4 cut(s) | 153, 166, 196, 380 |
| BmsI | GCATC | 3 cut(s) | 118, 535, 721 |
| BpmI | CTGGAG | 2 cut(s) | 78, 187 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 722, 764 |
| BsaJI | CCNNGG | 6 cut(s) | 64, 151, 260, 360, 385, 507 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 261, 262, 265 |
| BseBI | CCWGG | 4 cut(s) | 153, 166, 196, 380 |
| BseDI | CCNNGG | 6 cut(s) | 64, 151, 260, 360, 385, 507 |
| BseGI | GGATG | 4 cut(s) | 105, 133, 532, 721 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 261, 262, 265 |
| BseMII | CTCAG | 2 cut(s) | 337, 414 |
| BseRI | GAGGAG | 1 cut(s) | 719 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 1 cut(s) | 682 |
| BshFI | GGCC | 2 cut(s) | 63, 359 |
| BshNI | GGYRCC | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 1 cut(s) | 697 |
| BslFI | GGGAC | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 261, 262, 265 |
| BsmAI | GTCTC | 2 cut(s) | 163, 419 |
| BsmFI | GGGAC | 1 cut(s) | 118 |
| BsnI | GGCC | 2 cut(s) | 63, 359 |
| Bsp1286I | GDGCHC | 2 cut(s) | 369, 697 |
| Bsp143I | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 2 cut(s) | 63, 359 |
| BspCNI | CTCAG | 2 cut(s) | 336, 415 |
| BspLI | GGNNCC | 2 cut(s) | 400, 527 |
| BspPI | GGATC | 2 cut(s) | 381, 498 |
| BspT107I | GGYRCC | 1 cut(s) | 398 |
| BsrBI | CCGCTC | 1 cut(s) | 322 |
| BssECI | CCNNGG | 6 cut(s) | 64, 151, 260, 360, 385, 507 |
| BssMI | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| BssT1I | CCWWGG | 5 cut(s) | 64, 260, 360, 385, 507 |
| Bst2UI | CCWGG | 4 cut(s) | 153, 166, 196, 380 |
| Bst4CI | ACNGT | 2 cut(s) | 472, 774 |
| BstC8I | GCNNGC | 1 cut(s) | 158 |
| BstDEI | CTNAG | 2 cut(s) | 323, 423 |
| BstEII | GGTNACC | 1 cut(s) | 601 |
| BstF5I | GGATG | 4 cut(s) | 105, 133, 532, 721 |
| BstH2I | RGCGCY | 1 cut(s) | 14 |
| BstHHI | GCGC | 1 cut(s) | 13 |
| BstKTI | GATC | 6 cut(s) | 247, 291, 329, 376, 442, 506 |
| BstMAI | GTCTC | 2 cut(s) | 163, 419 |
| BstMBI | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 706 |
| BstNI | CCWGG | 4 cut(s) | 153, 166, 196, 380 |
| BstNSI | RCATGY | 1 cut(s) | 160 |
| BstPI | GGTNACC | 1 cut(s) | 601 |
| BstSCI | CCNGG | 4 cut(s) | 151, 164, 194, 378 |
| BstSFI | CTRYAG | 1 cut(s) | 184 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstV1I | GCAGC | 1 cut(s) | 682 |
| BstX2I | RGATCY | 3 cut(s) | 288, 373, 503 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 202, 598 |
| BstYI | RGATCY | 3 cut(s) | 288, 373, 503 |
| BsuRI | GGCC | 2 cut(s) | 63, 359 |
| BtgZI | GCGATG | 1 cut(s) | 60 |
| BtsCI | GGATG | 4 cut(s) | 105, 133, 532, 721 |
| BtsI | GCAGTG | 1 cut(s) | 741 |
| BtsIMutI | CAGTG | 1 cut(s) | 741 |
| Cac8I | GCNNGC | 1 cut(s) | 158 |
| CfoI | GCGC | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 2 cut(s) | 317, 382 |
| Csp6I | GTAC | 3 cut(s) | 399, 468, 632 |
| CviAII | CATG | 3 cut(s) | 157, 592, 679 |
| CviQI | GTAC | 3 cut(s) | 399, 468, 632 |
| DdeI | CTNAG | 2 cut(s) | 323, 423 |
| DpnI | GATC | 6 cut(s) | 246, 290, 328, 375, 441, 505 |
| DpnII | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| Ecl136II | GAGCTC | 1 cut(s) | 695 |
| Eco130I | CCWWGG | 5 cut(s) | 64, 260, 360, 385, 507 |
| Eco147I | AGGCCT | 2 cut(s) | 63, 359 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 2 cut(s) | 317, 382 |
| Eco53kI | GAGCTC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 1 cut(s) | 534 |
| Eco91I | GGTNACC | 1 cut(s) | 601 |
| EcoICRI | GAGCTC | 1 cut(s) | 695 |
| EcoO65I | GGTNACC | 1 cut(s) | 601 |
| EcoRI | GAATTC | 2 cut(s) | 418, 495 |
| EcoRII | CCWGG | 4 cut(s) | 151, 164, 194, 378 |
| EcoT14I | CCWWGG | 5 cut(s) | 64, 260, 360, 385, 507 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| ErhI | CCWWGG | 5 cut(s) | 64, 260, 360, 385, 507 |
| FaeI | CATG | 3 cut(s) | 160, 595, 682 |
| FaqI | GGGAC | 1 cut(s) | 118 |
| FatI | CATG | 3 cut(s) | 156, 591, 678 |
| FauNDI | CATATG | 1 cut(s) | 123 |
| FbaI | TGATCA | 1 cut(s) | 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 671 |
| FokI | GGATG | 4 cut(s) | 112, 140, 519, 728 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 1 cut(s) | 671 |
| FspBI | CTAG | 4 cut(s) | 14, 65, 386, 635 |
| GlaI | GCGC | 1 cut(s) | 12 |
| GluI | GCNGC | 1 cut(s) | 671 |
| GsuI | CTGGAG | 2 cut(s) | 78, 187 |
| HaeII | RGCGCY | 1 cut(s) | 14 |
| HaeIII | GGCC | 2 cut(s) | 63, 359 |
| HhaI | GCGC | 1 cut(s) | 13 |
| Hin1II | CATG | 3 cut(s) | 160, 595, 682 |
| Hin6I | GCGC | 1 cut(s) | 11 |
| HinP1I | GCGC | 1 cut(s) | 11 |
| HincII | GTYRAC | 2 cut(s) | 408, 491 |
| HindII | GTYRAC | 2 cut(s) | 408, 491 |
| HindIII | AAGCTT | 2 cut(s) | 516, 561 |
| HinfI | GANTC | 3 cut(s) | 171, 251, 434 |
| HphI | GGTGA | 3 cut(s) | 110, 314, 595 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 408, 491 |
| Hpy188I | TCNGA | 5 cut(s) | 31, 326, 331, 424, 439 |
| Hpy188III | TCNNGA | 5 cut(s) | 57, 76, 248, 353, 536 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 408, 491 |
| HpyAV | CCTTC | 1 cut(s) | 226 |
| HpyCH4III | ACNGT | 2 cut(s) | 472, 774 |
| HpyCH4IV | ACGT | 2 cut(s) | 110, 410 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 131, 464, 734, 739 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 706 |
| HpyF3I | CTNAG | 2 cut(s) | 323, 423 |
| HpySE526I | ACGT | 2 cut(s) | 110, 410 |
| Hsp92II | CATG | 3 cut(s) | 160, 595, 682 |
| HspAI | GCGC | 1 cut(s) | 11 |
| KpnI | GGTACC | 1 cut(s) | 402 |
| Ksp22I | TGATCA | 1 cut(s) | 439 |
| Kzo9I | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| LmnI | GCTCC | 2 cut(s) | 531, 706 |
| Lsp1109I | GCAGC | 1 cut(s) | 682 |
| LweI | GCATC | 3 cut(s) | 118, 535, 721 |
| MaeI | CTAG | 4 cut(s) | 14, 65, 386, 635 |
| MaeII | ACGT | 2 cut(s) | 110, 410 |
| MaeIII | GTNAC | 3 cut(s) | 577, 601, 768 |
| MalI | GATC | 6 cut(s) | 246, 290, 328, 375, 441, 505 |
| MbiI | CCGCTC | 1 cut(s) | 322 |
| MboI | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| MboII | GAAGA | 2 cut(s) | 319, 622 |
| MflI | RGATCY | 3 cut(s) | 288, 373, 503 |
| MhlI | GDGCHC | 2 cut(s) | 369, 697 |
| MluCI | AATT | 4 cut(s) | 418, 477, 495, 687 |
| MlyI | GAGTC | 2 cut(s) | 165, 428 |
| MmeI | TCCRAC | 1 cut(s) | 553 |
| MnlI | CCTC | 5 cut(s) | 25, 53, 266, 349, 697 |
| MseI | TTAA | 4 cut(s) | 41, 282, 293, 555 |
| MslI | CAYNNNNRTG | 2 cut(s) | 126, 596 |
| MspR9I | CCNGG | 4 cut(s) | 153, 166, 196, 380 |
| MvaI | CCWGG | 4 cut(s) | 153, 166, 196, 380 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 706 |
| NdeI | CATATG | 1 cut(s) | 123 |
| NdeII | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| NlaIII | CATG | 3 cut(s) | 160, 595, 682 |
| NlaIV | GGNNCC | 2 cut(s) | 400, 527 |
| NmeAIII | GCCGAG | 1 cut(s) | 676 |
| NmuCI | GTSAC | 1 cut(s) | 601 |
| NspI | RCATGY | 1 cut(s) | 160 |
| PaeI | GCATGC | 1 cut(s) | 160 |
| PceI | AGGCCT | 2 cut(s) | 63, 359 |
| PfeI | GAWTC | 1 cut(s) | 251 |
| PfoI | TCCNGGA | 2 cut(s) | 164, 378 |
| PkrI | GCNGC | 1 cut(s) | 672 |
| PleI | GAGTC | 2 cut(s) | 165, 428 |
| PpsI | GAGTC | 2 cut(s) | 165, 428 |
| PsiI | TTATAA | 1 cut(s) | 95 |
| Psp124BI | GAGCTC | 1 cut(s) | 697 |
| Psp1406I | AACGTT | 1 cut(s) | 110 |
| Psp6I | CCWGG | 4 cut(s) | 151, 164, 194, 378 |
| PspEI | GGTNACC | 1 cut(s) | 601 |
| PspGI | CCWGG | 4 cut(s) | 151, 164, 194, 378 |
| PspN4I | GGNNCC | 2 cut(s) | 400, 527 |
| PspPI | GGNCC | 2 cut(s) | 317, 382 |
| PsuI | RGATCY | 3 cut(s) | 288, 373, 503 |
| RsaI | GTAC | 3 cut(s) | 400, 469, 633 |
| RsaNI | GTAC | 3 cut(s) | 399, 468, 632 |
| RseI | CAYNNNNRTG | 2 cut(s) | 126, 596 |
| SacI | GAGCTC | 1 cut(s) | 697 |
| SaqAI | TTAA | 4 cut(s) | 41, 282, 293, 555 |
| SatI | GCNGC | 1 cut(s) | 671 |
| Sau3AI | GATC | 6 cut(s) | 244, 288, 326, 373, 439, 503 |
| Sau96I | GGNCC | 2 cut(s) | 317, 382 |
| SchI | GAGTC | 2 cut(s) | 165, 428 |
| ScrFI | CCNGG | 4 cut(s) | 153, 166, 196, 380 |
| SduI | GDGCHC | 2 cut(s) | 369, 697 |
| SfaNI | GCATC | 3 cut(s) | 118, 535, 721 |
| SfcI | CTRYAG | 1 cut(s) | 184 |
| SinI | GGWCC | 2 cut(s) | 317, 382 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 126, 596 |
| SmlI | CTYRAG | 3 cut(s) | 353, 701, 743 |
| SmoI | CTYRAG | 3 cut(s) | 353, 701, 743 |
| SphI | GCATGC | 1 cut(s) | 160 |
| Sse9I | AATT | 4 cut(s) | 418, 477, 495, 687 |
| SseBI | AGGCCT | 2 cut(s) | 63, 359 |
| SsiI | CCGC | 1 cut(s) | 320 |
| SspMI | CTAG | 4 cut(s) | 14, 65, 386, 635 |
| SstI | GAGCTC | 1 cut(s) | 697 |
| StuI | AGGCCT | 2 cut(s) | 63, 359 |
| StyD4I | CCNGG | 4 cut(s) | 151, 164, 194, 378 |
| StyI | CCWWGG | 5 cut(s) | 64, 260, 360, 385, 507 |
| TaaI | ACNGT | 2 cut(s) | 472, 774 |
| TaiI | ACGT | 2 cut(s) | 113, 413 |
| TaqI | TCGA | 1 cut(s) | 661 |
| TasI | AATT | 4 cut(s) | 418, 477, 495, 687 |
| TatI | WGTACW | 1 cut(s) | 467 |
| TfiI | GAWTC | 1 cut(s) | 251 |
| Tru1I | TTAA | 4 cut(s) | 41, 282, 293, 555 |
| Tru9I | TTAA | 4 cut(s) | 41, 282, 293, 555 |
| TscAI | CASTG | 1 cut(s) | 741 |
| TseFI | GTSAC | 1 cut(s) | 601 |
| TseI | GCWGC | 1 cut(s) | 670 |
| Tsp45I | GTSAC | 1 cut(s) | 601 |
| TspDTI | ATGAA | 1 cut(s) | 488 |
| TspRI | CASTG | 1 cut(s) | 741 |
| VpaK11BI | GGWCC | 2 cut(s) | 317, 382 |
| XapI | RAATTY | 2 cut(s) | 418, 495 |
| XceI | RCATGY | 1 cut(s) | 160 |
| XmaJI | CCTAGG | 2 cut(s) | 64, 385 |
| XspI | CTAG | 4 cut(s) | 14, 65, 386, 635 |