ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 419 |
| AciI | CCGC | 3 cut(s) | 626, 848, 935 |
| AclWI | GGATC | 2 cut(s) | 333, 430 |
| AcoI | YGGCCR | 1 cut(s) | 440 |
| AcsI | RAATTY | 2 cut(s) | 532, 704 |
| AcuI | CTGAAG | 1 cut(s) | 379 |
| AfeI | AGCGCT | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 321, 375, 559 |
| AgsI | TTSAA | 1 cut(s) | 703 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 111 |
| AjiI | CACGTC | 1 cut(s) | 925 |
| AjnI | CCWGG | 2 cut(s) | 374, 465 |
| AluBI | AGCT | 4 cut(s) | 356, 659, 758, 791 |
| AluI | AGCT | 4 cut(s) | 356, 659, 758, 791 |
| Alw26I | GTCTC | 4 cut(s) | 98, 146, 312, 442 |
| AlwI | GGATC | 2 cut(s) | 333, 430 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 32, 811 |
| Aor51HI | AGCGCT | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 440, 683 |
| ApeKI | GCWGC | 2 cut(s) | 547, 721 |
| ApoI | RAATTY | 2 cut(s) | 532, 704 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 145, 177 |
| AseI | ATTAAT | 1 cut(s) | 942 |
| AspLEI | GCGC | 2 cut(s) | 120, 552 |
| AsuHPI | GGTGA | 4 cut(s) | 74, 272, 612, 686 |
| AsuII | TTCGAA | 1 cut(s) | 708 |
| BbvI | GCAGC | 2 cut(s) | 534, 708 |
| BccI | CCATC | 1 cut(s) | 373 |
| BciT130I | CCWGG | 2 cut(s) | 376, 467 |
| BclI | TGATCA | 1 cut(s) | 634 |
| BcoDI | GTCTC | 4 cut(s) | 98, 146, 312, 442 |
| BfaI | CTAG | 3 cut(s) | 353, 660, 681 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfoI | RGCGCY | 1 cut(s) | 121 |
| BfuAI | ACCTGC | 1 cut(s) | 419 |
| BisI | GCNGC | 3 cut(s) | 548, 722, 936 |
| BlpI | GCTNAGC | 2 cut(s) | 121, 972 |
| BlsI | GCNGC | 3 cut(s) | 549, 723, 937 |
| Bme1390I | CCNGG | 2 cut(s) | 376, 467 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 111 |
| BmgBI | CACGTC | 1 cut(s) | 925 |
| BmiI | GGNNCC | 2 cut(s) | 223, 669 |
| BmrFI | CCNGG | 2 cut(s) | 376, 467 |
| BmrI | ACTGGG | 1 cut(s) | 331 |
| BmsI | GCATC | 2 cut(s) | 29, 244 |
| BmuI | ACTGGG | 1 cut(s) | 331 |
| BoxI | GACNNNNGTC | 1 cut(s) | 274 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 140, 172 |
| BpmI | CTGGAG | 1 cut(s) | 9 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 121, 972 |
| Bpu14I | TTCGAA | 1 cut(s) | 708 |
| BsaBI | GATNNNNATC | 2 cut(s) | 587, 633 |
| BsaI | GGTCTC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 374 |
| BsaWI | WCCGGW | 1 cut(s) | 314 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 321, 375, 559 |
| Bse1I | ACTGG | 1 cut(s) | 326 |
| Bse3DI | GCAATG | 2 cut(s) | 522, 924 |
| Bse8I | GATNNNNATC | 2 cut(s) | 587, 633 |
| BseBI | CCWGG | 2 cut(s) | 376, 467 |
| BseDI | CCNNGG | 2 cut(s) | 66, 374 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseJI | GATNNNNATC | 2 cut(s) | 587, 633 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 321, 375, 559 |
| BseMI | GCAATG | 2 cut(s) | 522, 924 |
| BseMII | CTCAG | 2 cut(s) | 891, 948 |
| BseNI | ACTGG | 1 cut(s) | 326 |
| BseRI | GAGGAG | 2 cut(s) | 164, 974 |
| BseX3I | CGGCCG | 1 cut(s) | 440 |
| BseXI | GCAGC | 2 cut(s) | 534, 708 |
| BsgI | GTGCAG | 1 cut(s) | 95 |
| Bsh1285I | CGRYCG | 1 cut(s) | 443 |
| BshFI | GGCC | 2 cut(s) | 442, 685 |
| BsiEI | CGRYCG | 1 cut(s) | 443 |
| BsiSI | CCGG | 3 cut(s) | 315, 439, 443 |
| BslFI | GGGAC | 2 cut(s) | 404, 822 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 321, 375, 559 |
| BsmAI | GTCTC | 4 cut(s) | 98, 146, 312, 442 |
| BsmFI | GGGAC | 2 cut(s) | 404, 822 |
| BsmI | GAATGC | 1 cut(s) | 973 |
| BsnI | GGCC | 2 cut(s) | 442, 685 |
| Bso31I | GGTCTC | 1 cut(s) | 146 |
| Bsp119I | TTCGAA | 1 cut(s) | 708 |
| Bsp143I | GATC | 4 cut(s) | 325, 435, 487, 634 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 121, 972 |
| BspACI | CCGC | 3 cut(s) | 626, 848, 935 |
| BspANI | GGCC | 2 cut(s) | 442, 685 |
| BspCNI | CTCAG | 2 cut(s) | 892, 949 |
| BspHI | TCATGA | 1 cut(s) | 747 |
| BspLI | GGNNCC | 2 cut(s) | 223, 669 |
| BspMI | ACCTGC | 1 cut(s) | 419 |
| BspPI | GGATC | 2 cut(s) | 333, 430 |
| BspT104I | TTCGAA | 1 cut(s) | 708 |
| BspTNI | GGTCTC | 1 cut(s) | 146 |
| BsrDI | GCAATG | 2 cut(s) | 522, 924 |
| BsrI | ACTGG | 1 cut(s) | 326 |
| BssECI | CCNNGG | 2 cut(s) | 66, 374 |
| BssMI | GATC | 4 cut(s) | 325, 435, 487, 634 |
| BssT1I | CCWWGG | 1 cut(s) | 66 |
| Bst2UI | CCWGG | 2 cut(s) | 376, 467 |
| Bst4CI | ACNGT | 2 cut(s) | 698, 813 |
| BstBI | TTCGAA | 1 cut(s) | 708 |
| BstC8I | GCNNGC | 2 cut(s) | 678, 850 |
| BstDEI | CTNAG | 6 cut(s) | 121, 196, 792, 900, 957, 972 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstH2I | RGCGCY | 1 cut(s) | 121 |
| BstHHI | GCGC | 2 cut(s) | 120, 552 |
| BstKTI | GATC | 4 cut(s) | 328, 438, 490, 637 |
| BstMAI | GTCTC | 4 cut(s) | 98, 146, 312, 442 |
| BstMBI | GATC | 4 cut(s) | 325, 435, 487, 634 |
| BstMCI | CGRYCG | 1 cut(s) | 443 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 682 |
| BstNI | CCWGG | 2 cut(s) | 376, 467 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 274 |
| BstSCI | CCNGG | 2 cut(s) | 374, 465 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 2 cut(s) | 534, 708 |
| BstZI | CGGCCG | 1 cut(s) | 440 |
| BsuRI | GGCC | 2 cut(s) | 442, 685 |
| BtrI | CACGTC | 1 cut(s) | 925 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| BveI | ACCTGC | 1 cut(s) | 419 |
| Cac8I | GCNNGC | 2 cut(s) | 678, 850 |
| CaiI | CAGNNNCTG | 2 cut(s) | 32, 811 |
| CciI | TCATGA | 1 cut(s) | 747 |
| CfoI | GCGC | 2 cut(s) | 120, 552 |
| CseI | GACGC | 1 cut(s) | 923 |
| CviAII | CATG | 6 cut(s) | 347, 544, 599, 638, 748, 836 |
| DdeI | CTNAG | 6 cut(s) | 121, 196, 792, 900, 957, 972 |
| DpnI | GATC | 4 cut(s) | 327, 437, 489, 636 |
| DpnII | GATC | 4 cut(s) | 325, 435, 487, 634 |
| DriI | GACNNNNNGTC | 1 cut(s) | 111 |
| EaeI | YGGCCR | 1 cut(s) | 440 |
| EagI | CGGCCG | 1 cut(s) | 440 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 111 |
| EclXI | CGGCCG | 1 cut(s) | 440 |
| Eco130I | CCWWGG | 1 cut(s) | 66 |
| Eco147I | AGGCCT | 1 cut(s) | 685 |
| Eco31I | GGTCTC | 1 cut(s) | 146 |
| Eco32I | GATATC | 1 cut(s) | 184 |
| Eco47III | AGCGCT | 1 cut(s) | 119 |
| Eco52I | CGGCCG | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 1 cut(s) | 379 |
| EcoRI | GAATTC | 1 cut(s) | 532 |
| EcoRII | CCWGG | 2 cut(s) | 374, 465 |
| EcoRV | GATATC | 1 cut(s) | 184 |
| EcoT14I | CCWWGG | 1 cut(s) | 66 |
| ErhI | CCWWGG | 1 cut(s) | 66 |
| FaeI | CATG | 6 cut(s) | 350, 547, 602, 641, 751, 839 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 785, 817 |
| FaqI | GGGAC | 2 cut(s) | 404, 822 |
| FatI | CATG | 6 cut(s) | 346, 543, 598, 637, 747, 835 |
| FauI | CCCGC | 1 cut(s) | 841 |
| FbaI | TGATCA | 1 cut(s) | 634 |
| Fnu4HI | GCNGC | 3 cut(s) | 548, 722, 936 |
| FokI | GGATG | 1 cut(s) | 391 |
| Fsp4HI | GCNGC | 3 cut(s) | 548, 722, 936 |
| FspBI | CTAG | 3 cut(s) | 353, 660, 681 |
| GlaI | GCGC | 2 cut(s) | 119, 551 |
| GluI | GCNGC | 3 cut(s) | 548, 722, 936 |
| GsuI | CTGGAG | 1 cut(s) | 9 |
| HaeII | RGCGCY | 1 cut(s) | 121 |
| HaeIII | GGCC | 2 cut(s) | 442, 685 |
| HapII | CCGG | 3 cut(s) | 315, 439, 443 |
| HgaI | GACGC | 1 cut(s) | 923 |
| HhaI | GCGC | 2 cut(s) | 120, 552 |
| Hin1II | CATG | 6 cut(s) | 350, 547, 602, 641, 751, 839 |
| Hin6I | GCGC | 2 cut(s) | 118, 550 |
| HinP1I | GCGC | 2 cut(s) | 118, 550 |
| HincII | GTYRAC | 2 cut(s) | 907, 913 |
| HindII | GTYRAC | 2 cut(s) | 907, 913 |
| HindIII | AAGCTT | 1 cut(s) | 756 |
| HinfI | GANTC | 9 cut(s) | 29, 106, 263, 270, 365, 403, 629, 744, 928 |
| HpaII | CCGG | 3 cut(s) | 315, 439, 443 |
| HphI | GGTGA | 4 cut(s) | 74, 272, 612, 686 |
| Hpy166II | GTNNAC | 2 cut(s) | 907, 913 |
| Hpy188I | TCNGA | 5 cut(s) | 216, 435, 538, 634, 901 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 267, 494, 748, 777 |
| Hpy8I | GTNNAC | 2 cut(s) | 907, 913 |
| HpyAV | CCTTC | 2 cut(s) | 380, 745 |
| HpyCH4III | ACNGT | 2 cut(s) | 698, 813 |
| HpyCH4IV | ACGT | 3 cut(s) | 498, 909, 924 |
| HpyCH4V | TGCA | 6 cut(s) | 20, 76, 428, 570, 724, 805 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 682 |
| HpyF3I | CTNAG | 6 cut(s) | 121, 196, 792, 900, 957, 972 |
| HpySE526I | ACGT | 3 cut(s) | 498, 909, 924 |
| Hsp92II | CATG | 6 cut(s) | 350, 547, 602, 641, 751, 839 |
| HspAI | GCGC | 2 cut(s) | 118, 550 |
| Ksp22I | TGATCA | 1 cut(s) | 634 |
| Kzo9I | GATC | 4 cut(s) | 325, 435, 487, 634 |
| LmnI | GCTCC | 1 cut(s) | 512 |
| Lsp1109I | GCAGC | 2 cut(s) | 534, 708 |
| LweI | GCATC | 2 cut(s) | 29, 244 |
| MaeI | CTAG | 3 cut(s) | 353, 660, 681 |
| MaeII | ACGT | 3 cut(s) | 498, 909, 924 |
| MaeIII | GTNAC | 3 cut(s) | 692, 925, 952 |
| MalI | GATC | 4 cut(s) | 327, 437, 489, 636 |
| MboI | GATC | 4 cut(s) | 325, 435, 487, 634 |
| MboII | GAAGA | 3 cut(s) | 433, 482, 851 |
| MluCI | AATT | 7 cut(s) | 171, 210, 384, 532, 704, 829, 864 |
| MlyI | GAGTC | 4 cut(s) | 100, 264, 753, 922 |
| MmeI | TCCRAC | 1 cut(s) | 121 |
| MseI | TTAA | 3 cut(s) | 308, 594, 942 |
| MslI | CAYNNNNRTG | 1 cut(s) | 840 |
| MspA1I | CMGCKG | 1 cut(s) | 626 |
| MspI | CCGG | 3 cut(s) | 315, 439, 443 |
| MspR9I | CCNGG | 2 cut(s) | 376, 467 |
| Mva1269I | GAATGC | 1 cut(s) | 973 |
| MvaI | CCWGG | 2 cut(s) | 376, 467 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 682 |
| NdeII | GATC | 4 cut(s) | 325, 435, 487, 634 |
| NlaIII | CATG | 6 cut(s) | 350, 547, 602, 641, 751, 839 |
| NlaIV | GGNNCC | 2 cut(s) | 223, 669 |
| NmuCI | GTSAC | 2 cut(s) | 692, 925 |
| NspV | TTCGAA | 1 cut(s) | 708 |
| PagI | TCATGA | 1 cut(s) | 747 |
| PceI | AGGCCT | 1 cut(s) | 685 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 921 |
| PctI | GAATGC | 1 cut(s) | 973 |
| PfeI | GAWTC | 5 cut(s) | 29, 263, 365, 403, 629 |
| PfoI | TCCNGGA | 1 cut(s) | 465 |
| PkrI | GCNGC | 3 cut(s) | 549, 723, 937 |
| PleI | GAGTC | 4 cut(s) | 100, 264, 752, 922 |
| PpsI | GAGTC | 4 cut(s) | 100, 264, 752, 922 |
| PshAI | GACNNNNGTC | 1 cut(s) | 274 |
| PshBI | ATTAAT | 1 cut(s) | 942 |
| Psp6I | CCWGG | 2 cut(s) | 374, 465 |
| PspGI | CCWGG | 2 cut(s) | 374, 465 |
| PspN4I | GGNNCC | 2 cut(s) | 223, 669 |
| PstNI | CAGNNNCTG | 2 cut(s) | 32, 811 |
| RseI | CAYNNNNRTG | 1 cut(s) | 840 |
| SaqAI | TTAA | 3 cut(s) | 308, 594, 942 |
| SatI | GCNGC | 3 cut(s) | 548, 722, 936 |
| Sau3AI | GATC | 4 cut(s) | 325, 435, 487, 634 |
| SchI | GAGTC | 4 cut(s) | 100, 264, 753, 922 |
| ScrFI | CCNGG | 2 cut(s) | 376, 467 |
| SfaNI | GCATC | 2 cut(s) | 29, 244 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SfuI | TTCGAA | 1 cut(s) | 708 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 840 |
| Sse9I | AATT | 7 cut(s) | 171, 210, 384, 532, 704, 829, 864 |
| SseBI | AGGCCT | 1 cut(s) | 685 |
| SsiI | CCGC | 3 cut(s) | 626, 848, 935 |
| SspMI | CTAG | 3 cut(s) | 353, 660, 681 |
| StuI | AGGCCT | 1 cut(s) | 685 |
| StyD4I | CCNGG | 2 cut(s) | 374, 465 |
| StyI | CCWWGG | 1 cut(s) | 66 |
| TaaI | ACNGT | 2 cut(s) | 698, 813 |
| TaiI | ACGT | 3 cut(s) | 501, 912, 927 |
| TaqI | TCGA | 3 cut(s) | 169, 708, 892 |
| TasI | AATT | 7 cut(s) | 171, 210, 384, 532, 704, 829, 864 |
| TauI | GCSGC | 1 cut(s) | 938 |
| TfiI | GAWTC | 5 cut(s) | 29, 263, 365, 403, 629 |
| Tru1I | TTAA | 3 cut(s) | 308, 594, 942 |
| Tru9I | TTAA | 3 cut(s) | 308, 594, 942 |
| TseFI | GTSAC | 2 cut(s) | 692, 925 |
| TseI | GCWGC | 2 cut(s) | 547, 721 |
| Tsp45I | GTSAC | 2 cut(s) | 692, 925 |
| TspDTI | ATGAA | 6 cut(s) | 17, 602, 764, 852, 858, 980 |
| VspI | ATTAAT | 1 cut(s) | 942 |
| XapI | RAATTY | 2 cut(s) | 532, 704 |
| XspI | CTAG | 3 cut(s) | 353, 660, 681 |