ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 433 |
| AccB1I | GGYRCC | 1 cut(s) | 506 |
| AccII | CGCG | 1 cut(s) | 242 |
| AciI | CCGC | 3 cut(s) | 146, 208, 242 |
| AclWI | GGATC | 8 cut(s) | 42, 656, 669, 741, 780, 796, 870, 912 |
| AcoI | YGGCCR | 1 cut(s) | 160 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AfaI | GTAC | 1 cut(s) | 811 |
| AfeI | AGCGCT | 1 cut(s) | 839 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 228 |
| AflIII | ACRYGT | 1 cut(s) | 942 |
| AgsI | TTSAA | 3 cut(s) | 31, 704, 956 |
| AjnI | CCWGG | 3 cut(s) | 259, 572, 723 |
| AluBI | AGCT | 6 cut(s) | 19, 482, 531, 563, 653, 986 |
| AluI | AGCT | 6 cut(s) | 19, 482, 531, 563, 653, 986 |
| Alw21I | GWGCWC | 2 cut(s) | 405, 484 |
| Alw26I | GTCTC | 1 cut(s) | 71 |
| Alw44I | GTGCAC | 1 cut(s) | 401 |
| AlwI | GGATC | 8 cut(s) | 42, 656, 669, 741, 780, 796, 870, 912 |
| Aor51HI | AGCGCT | 1 cut(s) | 839 |
| AoxI | GGCC | 2 cut(s) | 160, 256 |
| ApaLI | GTGCAC | 1 cut(s) | 401 |
| ApeKI | GCWGC | 3 cut(s) | 557, 560, 835 |
| AspLEI | GCGC | 1 cut(s) | 840 |
| AspS9I | GGNCC | 1 cut(s) | 257 |
| AsuHPI | GGTGA | 3 cut(s) | 34, 275, 905 |
| BaeGI | GKGCMC | 1 cut(s) | 405 |
| BamHI | GGATCC | 1 cut(s) | 661 |
| BanI | GGYRCC | 1 cut(s) | 506 |
| BanII | GRGCYC | 1 cut(s) | 484 |
| BauI | CACGAG | 1 cut(s) | 117 |
| BbsI | GAAGAC | 1 cut(s) | 433 |
| Bbv12I | GWGCWC | 2 cut(s) | 405, 484 |
| BbvI | GCAGC | 3 cut(s) | 569, 572, 847 |
| BccI | CCATC | 3 cut(s) | 267, 442, 625 |
| BciT130I | CCWGG | 3 cut(s) | 261, 574, 725 |
| BcoDI | GTCTC | 1 cut(s) | 71 |
| BfaI | CTAG | 3 cut(s) | 228, 597, 991 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BfoI | RGCGCY | 1 cut(s) | 841 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 274 |
| BisI | GCNGC | 3 cut(s) | 558, 561, 836 |
| BlsI | GCNGC | 3 cut(s) | 559, 562, 837 |
| Bme1390I | CCNGG | 3 cut(s) | 261, 574, 725 |
| BmgT120I | GGNCC | 1 cut(s) | 257 |
| BmiI | GGNNCC | 2 cut(s) | 508, 663 |
| BmrFI | CCNGG | 3 cut(s) | 261, 574, 725 |
| BmsI | GCATC | 1 cut(s) | 616 |
| BpiI | GAAGAC | 1 cut(s) | 433 |
| BpmI | CTGGAG | 2 cut(s) | 189, 595 |
| Bpu10I | CCTNAGC | 1 cut(s) | 672 |
| BpuEI | CTTGAG | 1 cut(s) | 367 |
| Bsa29I | ATCGAT | 1 cut(s) | 620 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaJI | CCNNGG | 3 cut(s) | 259, 368, 469 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 228 |
| Bse1I | ACTGG | 1 cut(s) | 750 |
| BseBI | CCWGG | 3 cut(s) | 261, 574, 725 |
| BseCI | ATCGAT | 1 cut(s) | 620 |
| BseDI | CCNNGG | 3 cut(s) | 259, 368, 469 |
| BseGI | GGATG | 2 cut(s) | 199, 298 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 228 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| BseNI | ACTGG | 1 cut(s) | 750 |
| BseRI | GAGGAG | 1 cut(s) | 947 |
| BseSI | GKGCMC | 1 cut(s) | 405 |
| BseX3I | CGGCCG | 1 cut(s) | 160 |
| BseXI | GCAGC | 3 cut(s) | 569, 572, 847 |
| Bsh1236I | CGCG | 1 cut(s) | 242 |
| Bsh1285I | CGRYCG | 1 cut(s) | 163 |
| BshFI | GGCC | 2 cut(s) | 162, 258 |
| BshNI | GGYRCC | 1 cut(s) | 506 |
| BshVI | ATCGAT | 1 cut(s) | 620 |
| BsiEI | CGRYCG | 1 cut(s) | 163 |
| BsiHKAI | GWGCWC | 2 cut(s) | 405, 484 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 228 |
| BsmAI | GTCTC | 1 cut(s) | 71 |
| BsmBI | CGTCTC | 1 cut(s) | 71 |
| BsmI | GAATGC | 2 cut(s) | 136, 734 |
| BsnI | GGCC | 2 cut(s) | 162, 258 |
| Bsp1286I | GDGCHC | 2 cut(s) | 405, 484 |
| BspACI | CCGC | 3 cut(s) | 146, 208, 242 |
| BspANI | GGCC | 2 cut(s) | 162, 258 |
| BspCNI | CTCAG | 1 cut(s) | 144 |
| BspDI | ATCGAT | 1 cut(s) | 620 |
| BspFNI | CGCG | 1 cut(s) | 242 |
| BspLI | GGNNCC | 2 cut(s) | 508, 663 |
| BspPI | GGATC | 8 cut(s) | 42, 656, 669, 741, 780, 796, 870, 912 |
| BspT107I | GGYRCC | 1 cut(s) | 506 |
| BsrI | ACTGG | 1 cut(s) | 750 |
| BssECI | CCNNGG | 3 cut(s) | 259, 368, 469 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| BssSI | CACGAG | 1 cut(s) | 117 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst2BI | CACGAG | 1 cut(s) | 117 |
| Bst2UI | CCWGG | 3 cut(s) | 261, 574, 725 |
| Bst4CI | ACNGT | 1 cut(s) | 296 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstC8I | GCNNGC | 3 cut(s) | 405, 651, 734 |
| BstDEI | CTNAG | 3 cut(s) | 152, 493, 672 |
| BstEII | GGTNACC | 1 cut(s) | 373 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 226 |
| BstF5I | GGATG | 2 cut(s) | 199, 298 |
| BstFNI | CGCG | 1 cut(s) | 242 |
| BstH2I | RGCGCY | 1 cut(s) | 841 |
| BstHHI | GCGC | 1 cut(s) | 840 |
| BstMAI | GTCTC | 1 cut(s) | 71 |
| BstMCI | CGRYCG | 1 cut(s) | 163 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 274 |
| BstNI | CCWGG | 3 cut(s) | 261, 574, 725 |
| BstNSI | RCATGY | 2 cut(s) | 684, 946 |
| BstPI | GGTNACC | 1 cut(s) | 373 |
| BstSCI | CCNGG | 3 cut(s) | 259, 572, 723 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstSLI | GKGCMC | 1 cut(s) | 405 |
| BstUI | CGCG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 3 cut(s) | 569, 572, 847 |
| BstV2I | GAAGAC | 1 cut(s) | 433 |
| BstX2I | RGATCY | 5 cut(s) | 34, 661, 746, 801, 904 |
| BstYI | RGATCY | 5 cut(s) | 34, 661, 746, 801, 904 |
| BstZI | CGGCCG | 1 cut(s) | 160 |
| Bsu15I | ATCGAT | 1 cut(s) | 620 |
| BsuRI | GGCC | 2 cut(s) | 162, 258 |
| BsuTUI | ATCGAT | 1 cut(s) | 620 |
| BtgZI | GCGATG | 1 cut(s) | 366 |
| BtsCI | GGATG | 2 cut(s) | 199, 298 |
| Cac8I | GCNNGC | 3 cut(s) | 405, 651, 734 |
| CfoI | GCGC | 1 cut(s) | 840 |
| Cfr13I | GGNCC | 1 cut(s) | 257 |
| ClaI | ATCGAT | 1 cut(s) | 620 |
| CseI | GACGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 1 cut(s) | 810 |
| CviAII | CATG | 5 cut(s) | 143, 327, 681, 901, 943 |
| CviQI | GTAC | 1 cut(s) | 810 |
| DdeI | CTNAG | 3 cut(s) | 152, 493, 672 |
| EaeI | YGGCCR | 1 cut(s) | 160 |
| EagI | CGGCCG | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| Ecl136II | GAGCTC | 1 cut(s) | 482 |
| EclXI | CGGCCG | 1 cut(s) | 160 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco24I | GRGCYC | 1 cut(s) | 484 |
| Eco32I | GATATC | 1 cut(s) | 898 |
| Eco47III | AGCGCT | 1 cut(s) | 839 |
| Eco52I | CGGCCG | 1 cut(s) | 160 |
| Eco53kI | GAGCTC | 1 cut(s) | 482 |
| Eco91I | GGTNACC | 1 cut(s) | 373 |
| EcoICRI | GAGCTC | 1 cut(s) | 482 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 257 |
| EcoO65I | GGTNACC | 1 cut(s) | 373 |
| EcoRII | CCWGG | 3 cut(s) | 259, 572, 723 |
| EcoRV | GATATC | 1 cut(s) | 898 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| EcoT38I | GRGCYC | 1 cut(s) | 484 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| Esp3I | CGTCTC | 1 cut(s) | 71 |
| FaeI | CATG | 5 cut(s) | 146, 330, 684, 904, 946 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 348, 380 |
| FatI | CATG | 5 cut(s) | 142, 326, 680, 900, 942 |
| FauI | CCCGC | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 3 cut(s) | 558, 561, 836 |
| FokI | GGATG | 2 cut(s) | 206, 285 |
| FriOI | GRGCYC | 1 cut(s) | 484 |
| Fsp4HI | GCNGC | 3 cut(s) | 558, 561, 836 |
| FspBI | CTAG | 3 cut(s) | 228, 597, 991 |
| GlaI | GCGC | 1 cut(s) | 839 |
| GluI | GCNGC | 3 cut(s) | 558, 561, 836 |
| GsuI | CTGGAG | 2 cut(s) | 189, 595 |
| HaeII | RGCGCY | 1 cut(s) | 841 |
| HaeIII | GGCC | 2 cut(s) | 162, 258 |
| HgaI | GACGC | 1 cut(s) | 248 |
| HhaI | GCGC | 1 cut(s) | 840 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin1II | CATG | 5 cut(s) | 146, 330, 684, 904, 946 |
| Hin6I | GCGC | 1 cut(s) | 838 |
| HinP1I | GCGC | 1 cut(s) | 838 |
| HincII | GTYRAC | 1 cut(s) | 948 |
| HindII | GTYRAC | 1 cut(s) | 948 |
| HindIII | AAGCTT | 1 cut(s) | 984 |
| HinfI | GANTC | 1 cut(s) | 49 |
| HphI | GGTGA | 3 cut(s) | 34, 275, 905 |
| Hpy166II | GTNNAC | 3 cut(s) | 403, 761, 948 |
| Hpy188I | TCNGA | 4 cut(s) | 628, 661, 720, 792 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 168, 597 |
| Hpy8I | GTNNAC | 3 cut(s) | 403, 761, 948 |
| Hpy99I | CGWCG | 1 cut(s) | 435 |
| HpyAV | CCTTC | 3 cut(s) | 25, 66, 88 |
| HpyCH4III | ACNGT | 1 cut(s) | 296 |
| HpyCH4IV | ACGT | 2 cut(s) | 198, 430 |
| HpyCH4V | TGCA | 3 cut(s) | 122, 403, 649 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 274 |
| HpyF3I | CTNAG | 3 cut(s) | 152, 493, 672 |
| HpySE526I | ACGT | 2 cut(s) | 198, 430 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| Hsp92II | CATG | 5 cut(s) | 146, 330, 684, 904, 946 |
| HspAI | GCGC | 1 cut(s) | 838 |
| LmnI | GCTCC | 1 cut(s) | 479 |
| Lsp1109I | GCAGC | 3 cut(s) | 569, 572, 847 |
| LweI | GCATC | 1 cut(s) | 616 |
| MaeI | CTAG | 3 cut(s) | 228, 597, 991 |
| MaeII | ACGT | 2 cut(s) | 198, 430 |
| MaeIII | GTNAC | 6 cut(s) | 40, 199, 341, 373, 524, 578 |
| MboII | GAAGA | 7 cut(s) | 94, 210, 356, 368, 438, 811, 949 |
| MflI | RGATCY | 5 cut(s) | 34, 661, 746, 801, 904 |
| MhlI | GDGCHC | 2 cut(s) | 405, 484 |
| MluCI | AATT | 2 cut(s) | 539, 766 |
| MmeI | TCCRAC | 3 cut(s) | 528, 734, 985 |
| MseI | TTAA | 4 cut(s) | 281, 390, 542, 786 |
| MslI | CAYNNNNRTG | 2 cut(s) | 141, 408 |
| MspR9I | CCNGG | 3 cut(s) | 261, 574, 725 |
| Mva1269I | GAATGC | 2 cut(s) | 136, 734 |
| MvaI | CCWGG | 3 cut(s) | 261, 574, 725 |
| MvnI | CGCG | 1 cut(s) | 242 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 274 |
| NlaIII | CATG | 5 cut(s) | 146, 330, 684, 904, 946 |
| NlaIV | GGNNCC | 2 cut(s) | 508, 663 |
| NmuCI | GTSAC | 3 cut(s) | 40, 341, 578 |
| NspI | RCATGY | 2 cut(s) | 684, 946 |
| PciI | ACATGT | 1 cut(s) | 942 |
| PctI | GAATGC | 2 cut(s) | 136, 734 |
| PfeI | GAWTC | 1 cut(s) | 49 |
| PkrI | GCNGC | 3 cut(s) | 559, 562, 837 |
| PscI | ACATGT | 1 cut(s) | 942 |
| Psp124BI | GAGCTC | 1 cut(s) | 484 |
| Psp6I | CCWGG | 3 cut(s) | 259, 572, 723 |
| PspEI | GGTNACC | 1 cut(s) | 373 |
| PspGI | CCWGG | 3 cut(s) | 259, 572, 723 |
| PspN4I | GGNNCC | 2 cut(s) | 508, 663 |
| PspPI | GGNCC | 1 cut(s) | 257 |
| PsuI | RGATCY | 5 cut(s) | 34, 661, 746, 801, 904 |
| RsaI | GTAC | 1 cut(s) | 811 |
| RsaNI | GTAC | 1 cut(s) | 810 |
| RseI | CAYNNNNRTG | 2 cut(s) | 141, 408 |
| SacI | GAGCTC | 1 cut(s) | 484 |
| SaqAI | TTAA | 4 cut(s) | 281, 390, 542, 786 |
| SatI | GCNGC | 3 cut(s) | 558, 561, 836 |
| Sau96I | GGNCC | 1 cut(s) | 257 |
| ScrFI | CCNGG | 3 cut(s) | 261, 574, 725 |
| SduI | GDGCHC | 2 cut(s) | 405, 484 |
| SfaNI | GCATC | 1 cut(s) | 616 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 141, 408 |
| SmlI | CTYRAG | 1 cut(s) | 346 |
| SmoI | CTYRAG | 1 cut(s) | 346 |
| Sse9I | AATT | 2 cut(s) | 539, 766 |
| SsiI | CCGC | 3 cut(s) | 146, 208, 242 |
| SspMI | CTAG | 3 cut(s) | 228, 597, 991 |
| SstI | GAGCTC | 1 cut(s) | 484 |
| StyD4I | CCNGG | 3 cut(s) | 259, 572, 723 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 1 cut(s) | 296 |
| TaiI | ACGT | 2 cut(s) | 201, 433 |
| TaqI | TCGA | 4 cut(s) | 52, 214, 433, 620 |
| TasI | AATT | 2 cut(s) | 539, 766 |
| TfiI | GAWTC | 1 cut(s) | 49 |
| Tru1I | TTAA | 4 cut(s) | 281, 390, 542, 786 |
| Tru9I | TTAA | 4 cut(s) | 281, 390, 542, 786 |
| TseFI | GTSAC | 3 cut(s) | 40, 341, 578 |
| TseI | GCWGC | 3 cut(s) | 557, 560, 835 |
| Tsp45I | GTSAC | 3 cut(s) | 40, 341, 578 |
| TspDTI | ATGAA | 2 cut(s) | 369, 426 |
| TspGWI | ACGGA | 1 cut(s) | 449 |
| VneI | GTGCAC | 1 cut(s) | 401 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 226 |
| XbaI | TCTAGA | 1 cut(s) | 596 |
| XceI | RCATGY | 2 cut(s) | 684, 946 |
| XspI | CTAG | 3 cut(s) | 228, 597, 991 |
| ZraI | GACGTC | 1 cut(s) | 431 |