ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 20 - 144 | 7.2e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 666 |
| Acc36I | ACCTGC | 1 cut(s) | 390 |
| AccI | GTMKAC | 1 cut(s) | 169 |
| AccIII | TCCGGA | 1 cut(s) | 1102 |
| AciI | CCGC | 7 cut(s) | 44, 241, 423, 449, 550, 1208, 1259 |
| AclWI | GGATC | 1 cut(s) | 1059 |
| AcoI | YGGCCR | 1 cut(s) | 196 |
| AcsI | RAATTY | 2 cut(s) | 972, 1267 |
| AfaI | GTAC | 3 cut(s) | 226, 512, 603 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 19, 316, 429, 537 |
| AgsI | TTSAA | 7 cut(s) | 292, 304, 461, 556, 646, 814, 832 |
| AhlI | ACTAGT | 1 cut(s) | 185 |
| AjiI | CACGTC | 1 cut(s) | 139 |
| AjnI | CCWGG | 1 cut(s) | 1186 |
| AleI | CACNNNNGTG | 1 cut(s) | 885 |
| AluBI | AGCT | 4 cut(s) | 298, 798, 809, 1157 |
| AluI | AGCT | 4 cut(s) | 298, 798, 809, 1157 |
| Alw26I | GTCTC | 1 cut(s) | 1209 |
| AlwI | GGATC | 1 cut(s) | 1059 |
| Aor13HI | TCCGGA | 1 cut(s) | 1102 |
| AoxI | GGCC | 5 cut(s) | 196, 383, 732, 918, 1189 |
| ApeKI | GCWGC | 3 cut(s) | 655, 694, 1256 |
| ApoI | RAATTY | 2 cut(s) | 972, 1267 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 575, 607 |
| AspA2I | CCTAGG | 1 cut(s) | 1091 |
| AspLEI | GCGC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 2 cut(s) | 383, 1190 |
| AsuC2I | CCSGG | 1 cut(s) | 387 |
| AsuHPI | GGTGA | 4 cut(s) | 296, 338, 694, 899 |
| AsuII | TTCGAA | 1 cut(s) | 116 |
| AvrII | CCTAGG | 1 cut(s) | 1091 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 975, 1008 |
| BalI | TGGCCA | 1 cut(s) | 198 |
| BbvI | GCAGC | 3 cut(s) | 667, 706, 1243 |
| BccI | CCATC | 6 cut(s) | 207, 623, 815, 878, 1042, 1190 |
| BciT130I | CCWGG | 1 cut(s) | 1188 |
| BciVI | GTATCC | 1 cut(s) | 976 |
| BcnI | CCSGG | 1 cut(s) | 387 |
| BcoDI | GTCTC | 1 cut(s) | 1209 |
| BcuI | ACTAGT | 1 cut(s) | 185 |
| BfaI | CTAG | 5 cut(s) | 186, 453, 503, 672, 1092 |
| BfmI | CTRYAG | 2 cut(s) | 947, 1041 |
| BfoI | RGCGCY | 1 cut(s) | 220 |
| BfuAI | ACCTGC | 1 cut(s) | 390 |
| BfuI | GTATCC | 1 cut(s) | 976 |
| BisI | GCNGC | 4 cut(s) | 450, 656, 695, 1257 |
| BlnI | CCTAGG | 1 cut(s) | 1091 |
| BlsI | GCNGC | 4 cut(s) | 451, 657, 696, 1258 |
| Bme1390I | CCNGG | 2 cut(s) | 387, 1188 |
| BmgBI | CACGTC | 1 cut(s) | 139 |
| BmgT120I | GGNCC | 2 cut(s) | 383, 1190 |
| BmiI | GGNNCC | 1 cut(s) | 384 |
| BmrFI | CCNGG | 2 cut(s) | 387, 1188 |
| BmrI | ACTGGG | 1 cut(s) | 1237 |
| BmuI | ACTGGG | 1 cut(s) | 1237 |
| BpmI | CTGGAG | 1 cut(s) | 38 |
| Bpu14I | TTCGAA | 1 cut(s) | 116 |
| BpuMI | CCSGG | 1 cut(s) | 387 |
| Bsa29I | ATCGAT | 1 cut(s) | 345 |
| BsaAI | YACGTR | 2 cut(s) | 605, 740 |
| BsaBI | GATNNNNATC | 2 cut(s) | 783, 888 |
| BsaJI | CCNNGG | 3 cut(s) | 269, 386, 1091 |
| BsaWI | WCCGGW | 1 cut(s) | 1102 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 248, 278, 1168, 1198 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 19, 316, 429, 537 |
| Bse1I | ACTGG | 2 cut(s) | 822, 1232 |
| Bse8I | GATNNNNATC | 2 cut(s) | 783, 888 |
| BseAI | TCCGGA | 1 cut(s) | 1102 |
| BseBI | CCWGG | 1 cut(s) | 1188 |
| BseCI | ATCGAT | 1 cut(s) | 345 |
| BseDI | CCNNGG | 3 cut(s) | 269, 386, 1091 |
| BseGI | GGATG | 8 cut(s) | 33, 106, 199, 396, 826, 994, 1002, 1171 |
| BseJI | GATNNNNATC | 2 cut(s) | 783, 888 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 19, 316, 429, 537 |
| BseMII | CTCAG | 2 cut(s) | 66, 204 |
| BseNI | ACTGG | 2 cut(s) | 822, 1232 |
| BseRI | GAGGAG | 2 cut(s) | 269, 426 |
| BseXI | GCAGC | 3 cut(s) | 667, 706, 1243 |
| BseYI | CCCAGC | 1 cut(s) | 612 |
| BsgI | GTGCAG | 2 cut(s) | 281, 674 |
| BshFI | GGCC | 5 cut(s) | 198, 385, 734, 920, 1191 |
| BshVI | ATCGAT | 1 cut(s) | 345 |
| BsiSI | CCGG | 2 cut(s) | 386, 1103 |
| BslFI | GGGAC | 1 cut(s) | 104 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 19, 316, 429, 537 |
| BsmAI | GTCTC | 1 cut(s) | 1209 |
| BsmFI | GGGAC | 1 cut(s) | 104 |
| BsmI | GAATGC | 2 cut(s) | 310, 526 |
| BsnI | GGCC | 5 cut(s) | 198, 385, 734, 920, 1191 |
| Bsp119I | TTCGAA | 1 cut(s) | 116 |
| Bsp13I | TCCGGA | 1 cut(s) | 1102 |
| Bsp143I | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| BspACI | CCGC | 7 cut(s) | 44, 241, 423, 449, 550, 1208, 1259 |
| BspANI | GGCC | 5 cut(s) | 198, 385, 734, 920, 1191 |
| BspCNI | CTCAG | 2 cut(s) | 65, 205 |
| BspDI | ATCGAT | 1 cut(s) | 345 |
| BspEI | TCCGGA | 1 cut(s) | 1102 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BspLI | GGNNCC | 1 cut(s) | 384 |
| BspMAI | CTGCAG | 1 cut(s) | 951 |
| BspMI | ACCTGC | 1 cut(s) | 390 |
| BspPI | GGATC | 1 cut(s) | 1059 |
| BspT104I | TTCGAA | 1 cut(s) | 116 |
| BsrI | ACTGG | 2 cut(s) | 822, 1232 |
| BssECI | CCNNGG | 3 cut(s) | 269, 386, 1091 |
| BssMI | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| BssNAI | GTATAC | 1 cut(s) | 170 |
| BssT1I | CCWWGG | 1 cut(s) | 1091 |
| Bst1107I | GTATAC | 1 cut(s) | 170 |
| Bst2UI | CCWGG | 1 cut(s) | 1188 |
| Bst4CI | ACNGT | 7 cut(s) | 38, 174, 224, 237, 270, 545, 652 |
| Bst6I | CTCTTC | 1 cut(s) | 925 |
| BstBAI | YACGTR | 2 cut(s) | 605, 740 |
| BstBI | TTCGAA | 1 cut(s) | 116 |
| BstDEI | CTNAG | 2 cut(s) | 52, 213 |
| BstDSI | CCRYGG | 1 cut(s) | 269 |
| BstF5I | GGATG | 8 cut(s) | 33, 106, 199, 396, 826, 994, 1002, 1171 |
| BstH2I | RGCGCY | 1 cut(s) | 220 |
| BstHHI | GCGC | 1 cut(s) | 219 |
| BstKTI | GATC | 6 cut(s) | 345, 487, 757, 892, 1054, 1081 |
| BstMAI | GTCTC | 1 cut(s) | 1209 |
| BstMBI | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 547 |
| BstNI | CCWGG | 1 cut(s) | 1188 |
| BstSCI | CCNGG | 2 cut(s) | 385, 1186 |
| BstSFI | CTRYAG | 2 cut(s) | 947, 1041 |
| BstV1I | GCAGC | 3 cut(s) | 667, 706, 1243 |
| BstZ17I | GTATAC | 1 cut(s) | 170 |
| Bsu15I | ATCGAT | 1 cut(s) | 345 |
| BsuI | GTATCC | 1 cut(s) | 976 |
| BsuRI | GGCC | 5 cut(s) | 198, 385, 734, 920, 1191 |
| BsuTUI | ATCGAT | 1 cut(s) | 345 |
| BtgI | CCRYGG | 1 cut(s) | 269 |
| BtrI | CACGTC | 1 cut(s) | 139 |
| BtsCI | GGATG | 8 cut(s) | 33, 106, 199, 396, 826, 994, 1002, 1171 |
| BtsIMutI | CAGTG | 3 cut(s) | 210, 233, 657 |
| BveI | ACCTGC | 1 cut(s) | 390 |
| CciI | TCATGA | 1 cut(s) | 148 |
| CfoI | GCGC | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 2 cut(s) | 383, 1190 |
| ClaI | ATCGAT | 1 cut(s) | 345 |
| Csp6I | GTAC | 3 cut(s) | 225, 511, 602 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 209, 244 |
| CviAII | CATG | 4 cut(s) | 149, 429, 752, 1055 |
| CviQI | GTAC | 3 cut(s) | 225, 511, 602 |
| DdeI | CTNAG | 2 cut(s) | 52, 213 |
| DpnI | GATC | 6 cut(s) | 344, 486, 756, 891, 1053, 1080 |
| DpnII | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| EaeI | YGGCCR | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 925 |
| EarI | CTCTTC | 1 cut(s) | 925 |
| Eco130I | CCWWGG | 1 cut(s) | 1091 |
| Eco147I | AGGCCT | 2 cut(s) | 734, 920 |
| Eco32I | GATATC | 1 cut(s) | 1234 |
| EcoRII | CCWGG | 1 cut(s) | 1186 |
| EcoRV | GATATC | 1 cut(s) | 1234 |
| EcoT14I | CCWWGG | 1 cut(s) | 1091 |
| ErhI | CCWWGG | 1 cut(s) | 1091 |
| FaeI | CATG | 4 cut(s) | 152, 432, 755, 1058 |
| FaqI | GGGAC | 1 cut(s) | 104 |
| FatI | CATG | 4 cut(s) | 148, 428, 751, 1054 |
| FauI | CCCGC | 1 cut(s) | 234 |
| FauNDI | CATATG | 1 cut(s) | 1062 |
| FblI | GTMKAC | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 4 cut(s) | 450, 656, 695, 1257 |
| FokI | GGATG | 8 cut(s) | 40, 113, 186, 403, 833, 1001, 1009, 1158 |
| Fsp4HI | GCNGC | 4 cut(s) | 450, 656, 695, 1257 |
| FspBI | CTAG | 5 cut(s) | 186, 453, 503, 672, 1092 |
| GlaI | GCGC | 1 cut(s) | 218 |
| GluI | GCNGC | 4 cut(s) | 450, 656, 695, 1257 |
| GsaI | CCCAGC | 1 cut(s) | 616 |
| GsuI | CTGGAG | 1 cut(s) | 38 |
| HaeII | RGCGCY | 1 cut(s) | 220 |
| HaeIII | GGCC | 5 cut(s) | 198, 385, 734, 920, 1191 |
| HapII | CCGG | 2 cut(s) | 386, 1103 |
| HhaI | GCGC | 1 cut(s) | 219 |
| Hin1II | CATG | 4 cut(s) | 152, 432, 755, 1058 |
| Hin6I | GCGC | 1 cut(s) | 217 |
| HinP1I | GCGC | 1 cut(s) | 217 |
| HincII | GTYRAC | 1 cut(s) | 1285 |
| HindII | GTYRAC | 1 cut(s) | 1285 |
| HindIII | AAGCTT | 1 cut(s) | 1155 |
| HinfI | GANTC | 1 cut(s) | 965 |
| HpaII | CCGG | 2 cut(s) | 386, 1103 |
| HphI | GGTGA | 4 cut(s) | 296, 338, 694, 899 |
| Hpy166II | GTNNAC | 3 cut(s) | 170, 511, 1285 |
| Hpy188I | TCNGA | 4 cut(s) | 628, 894, 1167, 1246 |
| Hpy188III | TCNNGA | 5 cut(s) | 17, 149, 881, 969, 1103 |
| Hpy8I | GTNNAC | 3 cut(s) | 170, 511, 1285 |
| Hpy99I | CGWCG | 1 cut(s) | 140 |
| HpyAV | CCTTC | 5 cut(s) | 310, 314, 373, 510, 910 |
| HpyCH4III | ACNGT | 7 cut(s) | 38, 174, 224, 237, 270, 545, 652 |
| HpyCH4IV | ACGT | 4 cut(s) | 138, 604, 619, 739 |
| HpyCH4V | TGCA | 7 cut(s) | 262, 526, 655, 751, 949, 1264, 1275 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 547 |
| HpyF3I | CTNAG | 2 cut(s) | 52, 213 |
| HpySE526I | ACGT | 4 cut(s) | 138, 604, 619, 739 |
| Hsp92II | CATG | 4 cut(s) | 152, 432, 755, 1058 |
| HspAI | GCGC | 1 cut(s) | 217 |
| Kpn2I | TCCGGA | 1 cut(s) | 1102 |
| Kzo9I | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| LmnI | GCTCC | 1 cut(s) | 396 |
| Lsp1109I | GCAGC | 3 cut(s) | 667, 706, 1243 |
| MaeI | CTAG | 5 cut(s) | 186, 453, 503, 672, 1092 |
| MaeII | ACGT | 4 cut(s) | 138, 604, 619, 739 |
| MaeIII | GTNAC | 3 cut(s) | 231, 264, 1096 |
| MalI | GATC | 6 cut(s) | 344, 486, 756, 891, 1053, 1080 |
| MboI | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| MboII | GAAGA | 4 cut(s) | 114, 758, 942, 949 |
| MfeI | CAATTG | 1 cut(s) | 532 |
| MlsI | TGGCCA | 1 cut(s) | 198 |
| MluCI | AATT | 8 cut(s) | 245, 532, 726, 972, 1083, 1146, 1267, 1302 |
| MluNI | TGGCCA | 1 cut(s) | 198 |
| MmeI | TCCRAC | 1 cut(s) | 384 |
| Mox20I | TGGCCA | 1 cut(s) | 198 |
| MroI | TCCGGA | 1 cut(s) | 1102 |
| MscI | TGGCCA | 1 cut(s) | 198 |
| MseI | TTAA | 2 cut(s) | 773, 783 |
| MslI | CAYNNNNRTG | 2 cut(s) | 885, 1065 |
| Msp20I | TGGCCA | 1 cut(s) | 198 |
| MspA1I | CMGCKG | 1 cut(s) | 449 |
| MspI | CCGG | 2 cut(s) | 386, 1103 |
| MspR9I | CCNGG | 2 cut(s) | 387, 1188 |
| MunI | CAATTG | 1 cut(s) | 532 |
| Mva1269I | GAATGC | 2 cut(s) | 310, 526 |
| MvaI | CCWGG | 1 cut(s) | 1188 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 547 |
| NciI | CCSGG | 1 cut(s) | 387 |
| NdeI | CATATG | 1 cut(s) | 1062 |
| NdeII | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| NlaIII | CATG | 4 cut(s) | 152, 432, 755, 1058 |
| NlaIV | GGNNCC | 1 cut(s) | 384 |
| NmuCI | GTSAC | 1 cut(s) | 231 |
| NspV | TTCGAA | 1 cut(s) | 116 |
| OliI | CACNNNNGTG | 1 cut(s) | 885 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PceI | AGGCCT | 2 cut(s) | 734, 920 |
| PctI | GAATGC | 2 cut(s) | 310, 526 |
| PfeI | GAWTC | 1 cut(s) | 965 |
| PkrI | GCNGC | 4 cut(s) | 451, 657, 696, 1258 |
| Ppu21I | YACGTR | 2 cut(s) | 605, 740 |
| PsiI | TTATAA | 1 cut(s) | 666 |
| Psp6I | CCWGG | 1 cut(s) | 1186 |
| PspFI | CCCAGC | 1 cut(s) | 612 |
| PspGI | CCWGG | 1 cut(s) | 1186 |
| PspN4I | GGNNCC | 1 cut(s) | 384 |
| PspPI | GGNCC | 2 cut(s) | 383, 1190 |
| PstI | CTGCAG | 1 cut(s) | 951 |
| RsaI | GTAC | 3 cut(s) | 226, 512, 603 |
| RsaNI | GTAC | 3 cut(s) | 225, 511, 602 |
| RseI | CAYNNNNRTG | 2 cut(s) | 885, 1065 |
| SaqAI | TTAA | 2 cut(s) | 773, 783 |
| SatI | GCNGC | 4 cut(s) | 450, 656, 695, 1257 |
| Sau3AI | GATC | 6 cut(s) | 342, 484, 754, 889, 1051, 1078 |
| Sau96I | GGNCC | 2 cut(s) | 383, 1190 |
| ScrFI | CCNGG | 2 cut(s) | 387, 1188 |
| SfcI | CTRYAG | 2 cut(s) | 947, 1041 |
| SfuI | TTCGAA | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 885, 1065 |
| SpeI | ACTAGT | 1 cut(s) | 185 |
| Sse9I | AATT | 8 cut(s) | 245, 532, 726, 972, 1083, 1146, 1267, 1302 |
| SseBI | AGGCCT | 2 cut(s) | 734, 920 |
| SsiI | CCGC | 7 cut(s) | 44, 241, 423, 449, 550, 1208, 1259 |
| SspMI | CTAG | 5 cut(s) | 186, 453, 503, 672, 1092 |
| StuI | AGGCCT | 2 cut(s) | 734, 920 |
| StyD4I | CCNGG | 2 cut(s) | 385, 1186 |
| StyI | CCWWGG | 1 cut(s) | 1091 |
| TaaI | ACNGT | 7 cut(s) | 38, 174, 224, 237, 270, 545, 652 |
| TaiI | ACGT | 4 cut(s) | 141, 607, 622, 742 |
| TaqI | TCGA | 4 cut(s) | 116, 135, 345, 1077 |
| TasI | AATT | 8 cut(s) | 245, 532, 726, 972, 1083, 1146, 1267, 1302 |
| TauI | GCSGC | 1 cut(s) | 452 |
| TfiI | GAWTC | 1 cut(s) | 965 |
| Tru1I | TTAA | 2 cut(s) | 773, 783 |
| Tru9I | TTAA | 2 cut(s) | 773, 783 |
| TscAI | CASTG | 3 cut(s) | 217, 240, 657 |
| TseFI | GTSAC | 1 cut(s) | 231 |
| TseI | GCWGC | 3 cut(s) | 655, 694, 1256 |
| Tsp45I | GTSAC | 1 cut(s) | 231 |
| TspDTI | ATGAA | 7 cut(s) | 17, 47, 137, 165, 417, 1013, 1124 |
| TspGWI | ACGGA | 1 cut(s) | 1001 |
| TspRI | CASTG | 3 cut(s) | 217, 240, 657 |
| XapI | RAATTY | 2 cut(s) | 972, 1267 |
| XmaJI | CCTAGG | 1 cut(s) | 1091 |
| XmiI | GTMKAC | 1 cut(s) | 169 |
| XspI | CTAG | 5 cut(s) | 186, 453, 503, 672, 1092 |