ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 135 |
| AccII | CGCG | 2 cut(s) | 127, 771 |
| AclWI | GGATC | 3 cut(s) | 117, 148, 503 |
| AcsI | RAATTY | 3 cut(s) | 43, 473, 1165 |
| AdeI | CACNNNGTG | 1 cut(s) | 395 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1257, 1346 |
| AgsI | TTSAA | 9 cut(s) | 247, 472, 479, 611, 670, 952, 1024, 1094, 1363 |
| AjiI | CACGTC | 1 cut(s) | 106 |
| AjnI | CCWGG | 1 cut(s) | 166 |
| AluBI | AGCT | 2 cut(s) | 176, 1388 |
| AluI | AGCT | 2 cut(s) | 176, 1388 |
| Alw21I | GWGCWC | 1 cut(s) | 1150 |
| Alw26I | GTCTC | 2 cut(s) | 445, 637 |
| AlwI | GGATC | 3 cut(s) | 117, 148, 503 |
| Ama87I | CYCGRG | 1 cut(s) | 30 |
| ApeKI | GCWGC | 1 cut(s) | 710 |
| ApoI | RAATTY | 3 cut(s) | 43, 473, 1165 |
| AseI | ATTAAT | 1 cut(s) | 548 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 9 |
| AspLEI | GCGC | 2 cut(s) | 136, 771 |
| AspS9I | GGNCC | 1 cut(s) | 164 |
| AsuHPI | GGTGA | 3 cut(s) | 269, 1244, 1442 |
| AsuII | TTCGAA | 3 cut(s) | 41, 121, 529 |
| AvaI | CYCGRG | 1 cut(s) | 30 |
| AvaII | GGWCC | 1 cut(s) | 164 |
| BanII | GRGCYC | 1 cut(s) | 284 |
| BbsI | GAAGAC | 2 cut(s) | 12, 1223 |
| Bbv12I | GWGCWC | 1 cut(s) | 1150 |
| BbvI | GCAGC | 1 cut(s) | 697 |
| BccI | CCATC | 5 cut(s) | 59, 352, 562, 952, 1364 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 11, 45, 861, 895 |
| BciT130I | CCWGG | 1 cut(s) | 168 |
| BcoDI | GTCTC | 2 cut(s) | 445, 637 |
| BfaI | CTAG | 5 cut(s) | 285, 393, 1086, 1184, 1257 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BisI | GCNGC | 1 cut(s) | 711 |
| BlsI | GCNGC | 1 cut(s) | 712 |
| Bme1390I | CCNGG | 1 cut(s) | 168 |
| Bme18I | GGWCC | 1 cut(s) | 164 |
| BmeT110I | CYCGRG | 1 cut(s) | 30 |
| BmgBI | CACGTC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 1 cut(s) | 164 |
| BmiI | GGNNCC | 3 cut(s) | 165, 1141, 1262 |
| BmrFI | CCNGG | 1 cut(s) | 168 |
| BmsI | GCATC | 6 cut(s) | 31, 136, 145, 247, 507, 1117 |
| BpiI | GAAGAC | 2 cut(s) | 12, 1223 |
| BpmI | CTGGAG | 3 cut(s) | 115, 189, 560 |
| Bpu14I | TTCGAA | 3 cut(s) | 41, 121, 529 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaI | GGTCTC | 1 cut(s) | 445 |
| BsaJI | CCNNGG | 4 cut(s) | 157, 275, 739, 1426 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 817, 847 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1257, 1346 |
| Bse118I | RCCGGY | 1 cut(s) | 892 |
| Bse1I | ACTGG | 2 cut(s) | 543, 1402 |
| Bse3DI | GCAATG | 1 cut(s) | 903 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseBI | CCWGG | 1 cut(s) | 168 |
| BseDI | CCNNGG | 4 cut(s) | 157, 275, 739, 1426 |
| BseGI | GGATG | 4 cut(s) | 496, 781, 853, 1000 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1257, 1346 |
| BseMI | GCAATG | 1 cut(s) | 903 |
| BseMII | CTCAG | 1 cut(s) | 104 |
| BseNI | ACTGG | 2 cut(s) | 543, 1402 |
| BseXI | GCAGC | 1 cut(s) | 697 |
| BseYI | CCCAGC | 1 cut(s) | 74 |
| BsgI | GTGCAG | 1 cut(s) | 453 |
| Bsh1236I | CGCG | 2 cut(s) | 127, 771 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1150 |
| BsiHKCI | CYCGRG | 1 cut(s) | 30 |
| BsiSI | CCGG | 1 cut(s) | 893 |
| BslFI | GGGAC | 5 cut(s) | 99, 177, 422, 607, 951 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1257, 1346 |
| BsmAI | GTCTC | 2 cut(s) | 445, 637 |
| BsmFI | GGGAC | 5 cut(s) | 99, 177, 422, 607, 951 |
| BsmI | GAATGC | 2 cut(s) | 907, 1055 |
| Bso31I | GGTCTC | 1 cut(s) | 445 |
| BsoBI | CYCGRG | 1 cut(s) | 30 |
| Bsp119I | TTCGAA | 3 cut(s) | 41, 121, 529 |
| Bsp1286I | GDGCHC | 2 cut(s) | 284, 1150 |
| Bsp143I | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| Bsp19I | CCATGG | 3 cut(s) | 157, 275, 739 |
| BspCNI | CTCAG | 1 cut(s) | 105 |
| BspFNI | CGCG | 2 cut(s) | 127, 771 |
| BspHI | TCATGA | 1 cut(s) | 1457 |
| BspLI | GGNNCC | 3 cut(s) | 165, 1141, 1262 |
| BspPI | GGATC | 3 cut(s) | 117, 148, 503 |
| BspT104I | TTCGAA | 3 cut(s) | 41, 121, 529 |
| BspTNI | GGTCTC | 1 cut(s) | 445 |
| BsrDI | GCAATG | 1 cut(s) | 903 |
| BsrFI | RCCGGY | 1 cut(s) | 892 |
| BsrI | ACTGG | 2 cut(s) | 543, 1402 |
| BssAI | RCCGGY | 1 cut(s) | 892 |
| BssECI | CCNNGG | 4 cut(s) | 157, 275, 739, 1426 |
| BssMI | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| BssT1I | CCWWGG | 3 cut(s) | 157, 275, 739 |
| Bst2UI | CCWGG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 1 cut(s) | 217 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 902 |
| BstBI | TTCGAA | 3 cut(s) | 41, 121, 529 |
| BstC8I | GCNNGC | 2 cut(s) | 178, 182 |
| BstDEI | CTNAG | 5 cut(s) | 59, 113, 317, 1221, 1295 |
| BstDSI | CCRYGG | 3 cut(s) | 157, 275, 739 |
| BstF5I | GGATG | 4 cut(s) | 496, 781, 853, 1000 |
| BstFNI | CGCG | 2 cut(s) | 127, 771 |
| BstHHI | GCGC | 2 cut(s) | 136, 771 |
| BstKTI | GATC | 7 cut(s) | 112, 131, 156, 223, 229, 328, 511 |
| BstMAI | GTCTC | 2 cut(s) | 445, 637 |
| BstMBI | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 133, 902 |
| BstNI | CCWGG | 1 cut(s) | 168 |
| BstSCI | CCNGG | 1 cut(s) | 166 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstUI | CGCG | 2 cut(s) | 127, 771 |
| BstV1I | GCAGC | 1 cut(s) | 697 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 1223 |
| BstX2I | RGATCY | 2 cut(s) | 109, 153 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1161 |
| BstYI | RGATCY | 2 cut(s) | 109, 153 |
| BtgI | CCRYGG | 3 cut(s) | 157, 275, 739 |
| BtrI | CACGTC | 1 cut(s) | 106 |
| BtsCI | GGATG | 4 cut(s) | 496, 781, 853, 1000 |
| Cac8I | GCNNGC | 2 cut(s) | 178, 182 |
| CciI | TCATGA | 1 cut(s) | 1457 |
| CfoI | GCGC | 2 cut(s) | 136, 771 |
| Cfr10I | RCCGGY | 1 cut(s) | 892 |
| Cfr13I | GGNCC | 1 cut(s) | 164 |
| CviAII | CATG | 9 cut(s) | 158, 234, 276, 294, 407, 740, 844, 1309, 1458 |
| DdeI | CTNAG | 5 cut(s) | 59, 113, 317, 1221, 1295 |
| DpnI | GATC | 7 cut(s) | 111, 130, 155, 222, 228, 327, 510 |
| DpnII | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| DraIII | CACNNNGTG | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 3 cut(s) | 157, 275, 739 |
| Eco24I | GRGCYC | 1 cut(s) | 284 |
| Eco31I | GGTCTC | 1 cut(s) | 445 |
| Eco47I | GGWCC | 1 cut(s) | 164 |
| Eco88I | CYCGRG | 1 cut(s) | 30 |
| EcoO109I | RGGNCCY | 1 cut(s) | 164 |
| EcoRI | GAATTC | 2 cut(s) | 43, 1165 |
| EcoRII | CCWGG | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 3 cut(s) | 157, 275, 739 |
| EcoT38I | GRGCYC | 1 cut(s) | 284 |
| ErhI | CCWWGG | 3 cut(s) | 157, 275, 739 |
| FaeI | CATG | 9 cut(s) | 161, 237, 279, 297, 410, 743, 847, 1312, 1461 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 971, 1003 |
| FaqI | GGGAC | 5 cut(s) | 99, 177, 422, 607, 951 |
| FatI | CATG | 9 cut(s) | 157, 233, 275, 293, 406, 739, 843, 1308, 1457 |
| Fnu4HI | GCNGC | 1 cut(s) | 711 |
| FokI | GGATG | 4 cut(s) | 483, 788, 860, 1007 |
| FriOI | GRGCYC | 1 cut(s) | 284 |
| Fsp4HI | GCNGC | 1 cut(s) | 711 |
| FspBI | CTAG | 5 cut(s) | 285, 393, 1086, 1184, 1257 |
| FspI | TGCGCA | 1 cut(s) | 135 |
| GlaI | GCGC | 2 cut(s) | 135, 770 |
| GluI | GCNGC | 1 cut(s) | 711 |
| GsaI | CCCAGC | 1 cut(s) | 78 |
| GsuI | CTGGAG | 3 cut(s) | 115, 189, 560 |
| HapII | CCGG | 1 cut(s) | 893 |
| HhaI | GCGC | 2 cut(s) | 136, 771 |
| Hin1II | CATG | 9 cut(s) | 161, 237, 279, 297, 410, 743, 847, 1312, 1461 |
| Hin6I | GCGC | 2 cut(s) | 134, 769 |
| HinP1I | GCGC | 2 cut(s) | 134, 769 |
| HinfI | GANTC | 8 cut(s) | 266, 398, 479, 554, 632, 856, 862, 1452 |
| HpaII | CCGG | 1 cut(s) | 893 |
| HphI | GGTGA | 3 cut(s) | 269, 1244, 1442 |
| Hpy166II | GTNNAC | 1 cut(s) | 825 |
| Hpy188I | TCNGA | 8 cut(s) | 114, 307, 403, 759, 837, 861, 928, 1061 |
| Hpy188III | TCNNGA | 6 cut(s) | 94, 224, 578, 1021, 1392, 1458 |
| Hpy8I | GTNNAC | 1 cut(s) | 825 |
| HpyAV | CCTTC | 2 cut(s) | 241, 668 |
| HpyCH4III | ACNGT | 1 cut(s) | 217 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 7 cut(s) | 22, 149, 371, 434, 713, 872, 1055 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 133, 902 |
| HpyF3I | CTNAG | 5 cut(s) | 59, 113, 317, 1221, 1295 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92II | CATG | 9 cut(s) | 161, 237, 279, 297, 410, 743, 847, 1312, 1461 |
| HspAI | GCGC | 2 cut(s) | 134, 769 |
| Kzo9I | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| LmnI | GCTCC | 2 cut(s) | 426, 1266 |
| Lsp1109I | GCAGC | 1 cut(s) | 697 |
| LweI | GCATC | 6 cut(s) | 31, 136, 145, 247, 507, 1117 |
| MaeI | CTAG | 5 cut(s) | 285, 393, 1086, 1184, 1257 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MaeIII | GTNAC | 7 cut(s) | 270, 376, 395, 489, 799, 886, 983 |
| MalI | GATC | 7 cut(s) | 111, 130, 155, 222, 228, 327, 510 |
| MboI | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| MboII | GAAGA | 4 cut(s) | 17, 1016, 1228, 1267 |
| MflI | RGATCY | 2 cut(s) | 109, 153 |
| MhlI | GDGCHC | 2 cut(s) | 284, 1150 |
| MluCI | AATT | 7 cut(s) | 43, 473, 545, 611, 873, 1165, 1444 |
| MlyI | GAGTC | 2 cut(s) | 392, 641 |
| MmeI | TCCRAC | 3 cut(s) | 763, 1178, 1310 |
| MroXI | GAANNNNTTC | 1 cut(s) | 9 |
| MseI | TTAA | 6 cut(s) | 188, 548, 867, 939, 1175, 1356 |
| MslI | CAYNNNNRTG | 2 cut(s) | 144, 349 |
| MspI | CCGG | 1 cut(s) | 893 |
| MspR9I | CCNGG | 1 cut(s) | 168 |
| Mva1269I | GAATGC | 2 cut(s) | 907, 1055 |
| MvaI | CCWGG | 1 cut(s) | 168 |
| MvnI | CGCG | 2 cut(s) | 127, 771 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 133, 902 |
| NcoI | CCATGG | 3 cut(s) | 157, 275, 739 |
| NdeII | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| NlaIII | CATG | 9 cut(s) | 161, 237, 279, 297, 410, 743, 847, 1312, 1461 |
| NlaIV | GGNNCC | 3 cut(s) | 165, 1141, 1262 |
| NmuCI | GTSAC | 3 cut(s) | 395, 799, 886 |
| NsbI | TGCGCA | 1 cut(s) | 135 |
| NspV | TTCGAA | 3 cut(s) | 41, 121, 529 |
| PaeR7I | CTCGAG | 1 cut(s) | 30 |
| PagI | TCATGA | 1 cut(s) | 1457 |
| PctI | GAATGC | 2 cut(s) | 907, 1055 |
| PdmI | GAANNNNTTC | 1 cut(s) | 9 |
| PfeI | GAWTC | 6 cut(s) | 266, 479, 554, 856, 862, 1452 |
| PkrI | GCNGC | 1 cut(s) | 712 |
| PleI | GAGTC | 2 cut(s) | 392, 640 |
| PpsI | GAGTC | 2 cut(s) | 392, 640 |
| PpuMI | RGGWCCY | 1 cut(s) | 164 |
| PshBI | ATTAAT | 1 cut(s) | 548 |
| Psp5II | RGGWCCY | 1 cut(s) | 164 |
| Psp6I | CCWGG | 1 cut(s) | 166 |
| PspFI | CCCAGC | 1 cut(s) | 74 |
| PspGI | CCWGG | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 3 cut(s) | 165, 1141, 1262 |
| PspPI | GGNCC | 1 cut(s) | 164 |
| PspPPI | RGGWCCY | 1 cut(s) | 164 |
| PspXI | VCTCGAGB | 1 cut(s) | 30 |
| PsuI | RGATCY | 2 cut(s) | 109, 153 |
| RseI | CAYNNNNRTG | 2 cut(s) | 144, 349 |
| SaqAI | TTAA | 6 cut(s) | 188, 548, 867, 939, 1175, 1356 |
| SatI | GCNGC | 1 cut(s) | 711 |
| Sau3AI | GATC | 7 cut(s) | 109, 128, 153, 220, 226, 325, 508 |
| Sau96I | GGNCC | 1 cut(s) | 164 |
| SchI | GAGTC | 2 cut(s) | 392, 641 |
| ScrFI | CCNGG | 1 cut(s) | 168 |
| SduI | GDGCHC | 2 cut(s) | 284, 1150 |
| SfaNI | GCATC | 6 cut(s) | 31, 136, 145, 247, 507, 1117 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| Sfr274I | CTCGAG | 1 cut(s) | 30 |
| SfuI | TTCGAA | 3 cut(s) | 41, 121, 529 |
| SinI | GGWCC | 1 cut(s) | 164 |
| SlaI | CTCGAG | 1 cut(s) | 30 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 144, 349 |
| SmlI | CTYRAG | 1 cut(s) | 30 |
| SmoI | CTYRAG | 1 cut(s) | 30 |
| Sse9I | AATT | 7 cut(s) | 43, 473, 545, 611, 873, 1165, 1444 |
| SspI | AATATT | 1 cut(s) | 688 |
| SspMI | CTAG | 5 cut(s) | 285, 393, 1086, 1184, 1257 |
| StyD4I | CCNGG | 1 cut(s) | 166 |
| StyI | CCWWGG | 3 cut(s) | 157, 275, 739 |
| TaaI | ACNGT | 1 cut(s) | 217 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqI | TCGA | 6 cut(s) | 31, 41, 121, 529, 703, 1300 |
| TasI | AATT | 7 cut(s) | 43, 473, 545, 611, 873, 1165, 1444 |
| TfiI | GAWTC | 6 cut(s) | 266, 479, 554, 856, 862, 1452 |
| Tru1I | TTAA | 6 cut(s) | 188, 548, 867, 939, 1175, 1356 |
| Tru9I | TTAA | 6 cut(s) | 188, 548, 867, 939, 1175, 1356 |
| TseFI | GTSAC | 3 cut(s) | 395, 799, 886 |
| TseI | GCWGC | 1 cut(s) | 710 |
| Tsp45I | GTSAC | 3 cut(s) | 395, 799, 886 |
| TspDTI | ATGAA | 7 cut(s) | 689, 869, 909, 914, 948, 1017, 1325 |
| VpaK11BI | GGWCC | 1 cut(s) | 164 |
| VspI | ATTAAT | 1 cut(s) | 548 |
| XapI | RAATTY | 3 cut(s) | 43, 473, 1165 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 164, 565 |
| XhoI | CTCGAG | 1 cut(s) | 30 |
| XmnI | GAANNNNTTC | 1 cut(s) | 9 |
| XspI | CTAG | 5 cut(s) | 285, 393, 1086, 1184, 1257 |