ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 1 cut(s) | 194 |
| AclWI | GGATC | 5 cut(s) | 296, 387, 691, 764, 996 |
| AcsI | RAATTY | 1 cut(s) | 562 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AfaI | GTAC | 3 cut(s) | 642, 694, 946 |
| AfeI | AGCGCT | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 469, 589, 1029 |
| AgsI | TTSAA | 8 cut(s) | 51, 67, 427, 567, 733, 886, 929, 965 |
| AjnI | CCWGG | 2 cut(s) | 295, 1011 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 2 cut(s) | 710, 788 |
| AluI | AGCT | 2 cut(s) | 710, 788 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwI | GGATC | 5 cut(s) | 296, 387, 691, 764, 996 |
| Aor51HI | AGCGCT | 1 cut(s) | 159 |
| AoxI | GGCC | 2 cut(s) | 89, 460 |
| ApoI | RAATTY | 1 cut(s) | 562 |
| AspA2I | CCTAGG | 1 cut(s) | 529 |
| AspLEI | GCGC | 1 cut(s) | 160 |
| AspS9I | GGNCC | 4 cut(s) | 90, 293, 461, 664 |
| AsuHPI | GGTGA | 2 cut(s) | 311, 431 |
| AvaII | GGWCC | 2 cut(s) | 293, 664 |
| AvrII | CCTAGG | 1 cut(s) | 529 |
| BccI | CCATC | 7 cut(s) | 188, 241, 303, 452, 683, 901, 979 |
| BciT130I | CCWGG | 2 cut(s) | 297, 1013 |
| BciVI | GTATCC | 1 cut(s) | 906 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 5 cut(s) | 530, 690, 707, 849, 921 |
| BfoI | RGCGCY | 1 cut(s) | 161 |
| BfuAI | ACCTGC | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 906 |
| BglII | AGATCT | 1 cut(s) | 432 |
| BlnI | CCTAGG | 1 cut(s) | 529 |
| Bme1390I | CCNGG | 2 cut(s) | 297, 1013 |
| Bme18I | GGWCC | 2 cut(s) | 293, 664 |
| BmgT120I | GGNCC | 4 cut(s) | 90, 293, 461, 664 |
| BmiI | GGNNCC | 2 cut(s) | 92, 752 |
| BmrFI | CCNGG | 2 cut(s) | 297, 1013 |
| BmsI | GCATC | 2 cut(s) | 274, 490 |
| BoxI | GACNNNNGTC | 1 cut(s) | 800 |
| Bpu10I | CCTNAGC | 1 cut(s) | 633 |
| Bsa29I | ATCGAT | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 3 cut(s) | 404, 529, 1011 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 469, 589, 1029 |
| Bse1I | ACTGG | 2 cut(s) | 811, 1054 |
| BseBI | CCWGG | 2 cut(s) | 297, 1013 |
| BseCI | ATCGAT | 1 cut(s) | 273 |
| BseDI | CCNNGG | 3 cut(s) | 404, 529, 1011 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 469, 589, 1029 |
| BseMII | CTCAG | 1 cut(s) | 179 |
| BseNI | ACTGG | 2 cut(s) | 811, 1054 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| BsgI | GTGCAG | 1 cut(s) | 263 |
| BshFI | GGCC | 2 cut(s) | 91, 462 |
| BshVI | ATCGAT | 1 cut(s) | 273 |
| BslFI | GGGAC | 1 cut(s) | 265 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 469, 589, 1029 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmFI | GGGAC | 1 cut(s) | 265 |
| BsnI | GGCC | 2 cut(s) | 91, 462 |
| Bsp1407I | TGTACA | 1 cut(s) | 944 |
| BspANI | GGCC | 2 cut(s) | 91, 462 |
| BspCNI | CTCAG | 1 cut(s) | 180 |
| BspDI | ATCGAT | 1 cut(s) | 273 |
| BspLI | GGNNCC | 2 cut(s) | 92, 752 |
| BspMI | ACCTGC | 1 cut(s) | 194 |
| BspPI | GGATC | 5 cut(s) | 296, 387, 691, 764, 996 |
| BsrGI | TGTACA | 1 cut(s) | 944 |
| BsrI | ACTGG | 2 cut(s) | 811, 1054 |
| BssECI | CCNNGG | 3 cut(s) | 404, 529, 1011 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 529 |
| Bst2UI | CCWGG | 2 cut(s) | 297, 1013 |
| Bst4CI | ACNGT | 4 cut(s) | 55, 256, 515, 955 |
| Bst6I | CTCTTC | 3 cut(s) | 405, 924, 963 |
| BstAUI | TGTACA | 1 cut(s) | 944 |
| BstC8I | GCNNGC | 3 cut(s) | 156, 687, 999 |
| BstDEI | CTNAG | 4 cut(s) | 17, 188, 259, 633 |
| BstEII | GGTNACC | 1 cut(s) | 809 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1027 |
| BstH2I | RGCGCY | 1 cut(s) | 161 |
| BstHHI | GCGC | 1 cut(s) | 160 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 898 |
| BstNI | CCWGG | 2 cut(s) | 297, 1013 |
| BstNSI | RCATGY | 3 cut(s) | 324, 761, 1001 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 800 |
| BstPI | GGTNACC | 1 cut(s) | 809 |
| BstSCI | CCNGG | 2 cut(s) | 295, 1011 |
| BstX2I | RGATCY | 2 cut(s) | 379, 432 |
| BstYI | RGATCY | 2 cut(s) | 379, 432 |
| Bsu15I | ATCGAT | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 906 |
| BsuRI | GGCC | 2 cut(s) | 91, 462 |
| BsuTUI | ATCGAT | 1 cut(s) | 273 |
| BtsIMutI | CAGTG | 2 cut(s) | 146, 804 |
| BveI | ACCTGC | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 3 cut(s) | 156, 687, 999 |
| CfoI | GCGC | 1 cut(s) | 160 |
| Cfr13I | GGNCC | 4 cut(s) | 90, 293, 461, 664 |
| ClaI | ATCGAT | 1 cut(s) | 273 |
| CseI | GACGC | 1 cut(s) | 881 |
| Csp6I | GTAC | 3 cut(s) | 641, 693, 945 |
| CviAII | CATG | 3 cut(s) | 321, 758, 998 |
| CviQI | GTAC | 3 cut(s) | 641, 693, 945 |
| DdeI | CTNAG | 4 cut(s) | 17, 188, 259, 633 |
| Eam1104I | CTCTTC | 3 cut(s) | 405, 924, 963 |
| EarI | CTCTTC | 3 cut(s) | 405, 924, 963 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 529 |
| Eco47I | GGWCC | 2 cut(s) | 293, 664 |
| Eco47III | AGCGCT | 1 cut(s) | 159 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| Eco91I | GGTNACC | 1 cut(s) | 809 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1027 |
| EcoO109I | RGGNCCY | 2 cut(s) | 90, 293 |
| EcoO65I | GGTNACC | 1 cut(s) | 809 |
| EcoRI | GAATTC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 2 cut(s) | 295, 1011 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 529 |
| ErhI | CCWWGG | 2 cut(s) | 404, 529 |
| FaeI | CATG | 3 cut(s) | 324, 761, 1001 |
| FaqI | GGGAC | 1 cut(s) | 265 |
| FatI | CATG | 3 cut(s) | 320, 757, 997 |
| FauNDI | CATATG | 1 cut(s) | 172 |
| FspBI | CTAG | 5 cut(s) | 530, 690, 707, 849, 921 |
| GlaI | GCGC | 1 cut(s) | 159 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| HaeII | RGCGCY | 1 cut(s) | 161 |
| HaeIII | GGCC | 2 cut(s) | 91, 462 |
| HgaI | GACGC | 1 cut(s) | 881 |
| HhaI | GCGC | 1 cut(s) | 160 |
| Hin1II | CATG | 3 cut(s) | 324, 761, 1001 |
| Hin6I | GCGC | 1 cut(s) | 158 |
| HinP1I | GCGC | 1 cut(s) | 158 |
| HincII | GTYRAC | 1 cut(s) | 896 |
| HindII | GTYRAC | 1 cut(s) | 896 |
| HindIII | AAGCTT | 1 cut(s) | 786 |
| HinfI | GANTC | 6 cut(s) | 47, 395, 492, 571, 659, 729 |
| HphI | GGTGA | 2 cut(s) | 311, 431 |
| Hpy166II | GTNNAC | 2 cut(s) | 643, 896 |
| Hpy188I | TCNGA | 7 cut(s) | 189, 239, 306, 349, 497, 549, 664 |
| Hpy188III | TCNNGA | 3 cut(s) | 223, 524, 965 |
| Hpy8I | GTNNAC | 2 cut(s) | 643, 896 |
| HpyAV | CCTTC | 2 cut(s) | 61, 615 |
| HpyCH4III | ACNGT | 4 cut(s) | 55, 256, 515, 955 |
| HpyCH4IV | ACGT | 2 cut(s) | 344, 352 |
| HpyCH4V | TGCA | 7 cut(s) | 30, 42, 176, 244, 376, 600, 997 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 898 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 188, 259, 633 |
| HpySE526I | ACGT | 2 cut(s) | 344, 352 |
| Hsp92II | CATG | 3 cut(s) | 324, 761, 1001 |
| HspAI | GCGC | 1 cut(s) | 158 |
| LmnI | GCTCC | 1 cut(s) | 756 |
| LweI | GCATC | 2 cut(s) | 274, 490 |
| MaeI | CTAG | 5 cut(s) | 530, 690, 707, 849, 921 |
| MaeII | ACGT | 2 cut(s) | 344, 352 |
| MaeIII | GTNAC | 6 cut(s) | 353, 386, 419, 802, 809, 826 |
| MboII | GAAGA | 6 cut(s) | 392, 463, 512, 941, 980, 985 |
| MflI | RGATCY | 2 cut(s) | 379, 432 |
| MluCI | AATT | 4 cut(s) | 25, 282, 562, 837 |
| MlyI | GAGTC | 1 cut(s) | 565 |
| MmeI | TCCRAC | 1 cut(s) | 778 |
| MseI | TTAA | 3 cut(s) | 437, 935, 1054 |
| MspR9I | CCNGG | 2 cut(s) | 297, 1013 |
| MvaI | CCWGG | 2 cut(s) | 297, 1013 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 898 |
| NdeI | CATATG | 1 cut(s) | 172 |
| NlaIII | CATG | 3 cut(s) | 324, 761, 1001 |
| NlaIV | GGNNCC | 2 cut(s) | 92, 752 |
| NmuCI | GTSAC | 4 cut(s) | 353, 386, 419, 802 |
| NspI | RCATGY | 3 cut(s) | 324, 761, 1001 |
| PaeI | GCATGC | 1 cut(s) | 1001 |
| PaqCI | CACCTGC | 1 cut(s) | 194 |
| PfeI | GAWTC | 5 cut(s) | 47, 395, 492, 659, 729 |
| PleI | GAGTC | 1 cut(s) | 565 |
| PpsI | GAGTC | 1 cut(s) | 565 |
| PpuMI | RGGWCCY | 1 cut(s) | 293 |
| PshAI | GACNNNNGTC | 1 cut(s) | 800 |
| Psp5II | RGGWCCY | 1 cut(s) | 293 |
| Psp6I | CCWGG | 2 cut(s) | 295, 1011 |
| PspEI | GGTNACC | 1 cut(s) | 809 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 2 cut(s) | 295, 1011 |
| PspN4I | GGNNCC | 2 cut(s) | 92, 752 |
| PspPI | GGNCC | 4 cut(s) | 90, 293, 461, 664 |
| PspPPI | RGGWCCY | 1 cut(s) | 293 |
| PsuI | RGATCY | 2 cut(s) | 379, 432 |
| RsaI | GTAC | 3 cut(s) | 642, 694, 946 |
| RsaNI | GTAC | 3 cut(s) | 641, 693, 945 |
| SaqAI | TTAA | 3 cut(s) | 437, 935, 1054 |
| Sau96I | GGNCC | 4 cut(s) | 90, 293, 461, 664 |
| SchI | GAGTC | 1 cut(s) | 565 |
| ScrFI | CCNGG | 2 cut(s) | 297, 1013 |
| SfaNI | GCATC | 2 cut(s) | 274, 490 |
| SinI | GGWCC | 2 cut(s) | 293, 664 |
| SphI | GCATGC | 1 cut(s) | 1001 |
| Sse9I | AATT | 4 cut(s) | 25, 282, 562, 837 |
| SspMI | CTAG | 5 cut(s) | 530, 690, 707, 849, 921 |
| StyD4I | CCNGG | 2 cut(s) | 295, 1011 |
| StyI | CCWWGG | 2 cut(s) | 404, 529 |
| TaaI | ACNGT | 4 cut(s) | 55, 256, 515, 955 |
| TaiI | ACGT | 2 cut(s) | 347, 355 |
| TaqI | TCGA | 2 cut(s) | 273, 738 |
| TasI | AATT | 4 cut(s) | 25, 282, 562, 837 |
| TatI | WGTACW | 1 cut(s) | 944 |
| TfiI | GAWTC | 5 cut(s) | 47, 395, 492, 659, 729 |
| Tru1I | TTAA | 3 cut(s) | 437, 935, 1054 |
| Tru9I | TTAA | 3 cut(s) | 437, 935, 1054 |
| TscAI | CASTG | 2 cut(s) | 153, 811 |
| TseFI | GTSAC | 4 cut(s) | 353, 386, 419, 802 |
| Tsp45I | GTSAC | 4 cut(s) | 353, 386, 419, 802 |
| TspDTI | ATGAA | 2 cut(s) | 159, 246 |
| TspRI | CASTG | 2 cut(s) | 153, 811 |
| VpaK11BI | GGWCC | 2 cut(s) | 293, 664 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1027 |
| XapI | RAATTY | 1 cut(s) | 562 |
| XceI | RCATGY | 3 cut(s) | 324, 761, 1001 |
| XmaJI | CCTAGG | 1 cut(s) | 529 |
| XspI | CTAG | 5 cut(s) | 530, 690, 707, 849, 921 |