ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 356 |
| Acc16I | TGCGCA | 1 cut(s) | 543 |
| Acc36I | ACCTGC | 1 cut(s) | 356 |
| AccB1I | GGYRCC | 1 cut(s) | 238 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 204 |
| AccBSI | CCGCTC | 1 cut(s) | 965 |
| AccII | CGCG | 2 cut(s) | 259, 475 |
| AciI | CCGC | 6 cut(s) | 224, 413, 440, 473, 677, 965 |
| AclWI | GGATC | 4 cut(s) | 169, 424, 966, 1136 |
| AcoI | YGGCCR | 2 cut(s) | 209, 270 |
| AcsI | RAATTY | 4 cut(s) | 200, 804, 1106, 1301 |
| AcuI | CTGAAG | 1 cut(s) | 1240 |
| AcyI | GRCGYC | 3 cut(s) | 130, 239, 491 |
| AfaI | GTAC | 4 cut(s) | 325, 621, 625, 1219 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 106, 126, 204, 461, 1132 |
| AflIII | ACRYGT | 1 cut(s) | 181 |
| AgsI | TTSAA | 8 cut(s) | 286, 811, 1058, 1105, 1112, 1178, 1283, 1289 |
| AjiI | CACGTC | 1 cut(s) | 124 |
| AjnI | CCWGG | 3 cut(s) | 667, 734, 1230 |
| AleI | CACNNNNGTG | 1 cut(s) | 186 |
| AluBI | AGCT | 4 cut(s) | 80, 86, 152, 1061 |
| AluI | AGCT | 4 cut(s) | 80, 86, 152, 1061 |
| Alw26I | GTCTC | 1 cut(s) | 935 |
| AlwI | GGATC | 4 cut(s) | 169, 424, 966, 1136 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 382 |
| Ama87I | CYCGRG | 2 cut(s) | 81, 316 |
| AoxI | GGCC | 5 cut(s) | 62, 209, 270, 516, 873 |
| ApeKI | GCWGC | 5 cut(s) | 56, 194, 382, 1243, 1267 |
| ApoI | RAATTY | 4 cut(s) | 200, 804, 1106, 1301 |
| AspLEI | GCGC | 5 cut(s) | 56, 241, 259, 477, 544 |
| AspS9I | GGNCC | 5 cut(s) | 305, 517, 556, 665, 833 |
| AsuHPI | GGTGA | 4 cut(s) | 44, 96, 301, 683 |
| AsuNHI | GCTAGC | 1 cut(s) | 1061 |
| AvaI | CYCGRG | 2 cut(s) | 81, 316 |
| AvaII | GGWCC | 4 cut(s) | 305, 556, 665, 833 |
| BaeGI | GKGCMC | 1 cut(s) | 1231 |
| BalI | TGGCCA | 1 cut(s) | 211 |
| BanI | GGYRCC | 1 cut(s) | 238 |
| BbsI | GAAGAC | 2 cut(s) | 29, 1099 |
| BbvI | GCAGC | 5 cut(s) | 43, 181, 369, 1255, 1279 |
| BccI | CCATC | 2 cut(s) | 223, 560 |
| BceAI | ACGGC | 2 cut(s) | 285, 1057 |
| BciT130I | CCWGG | 3 cut(s) | 669, 736, 1232 |
| BclI | TGATCA | 1 cut(s) | 1036 |
| BcoDI | GTCTC | 1 cut(s) | 935 |
| BfaI | CTAG | 8 cut(s) | 354, 479, 1005, 1026, 1062, 1154, 1203, 1384 |
| BfoI | RGCGCY | 2 cut(s) | 57, 242 |
| BfuAI | ACCTGC | 1 cut(s) | 356 |
| BglII | AGATCT | 1 cut(s) | 751 |
| BisI | GCNGC | 6 cut(s) | 57, 195, 225, 383, 1244, 1268 |
| BlsI | GCNGC | 6 cut(s) | 58, 196, 226, 384, 1245, 1269 |
| Bme1390I | CCNGG | 3 cut(s) | 669, 736, 1232 |
| Bme18I | GGWCC | 4 cut(s) | 305, 556, 665, 833 |
| BmeT110I | CYCGRG | 2 cut(s) | 81, 316 |
| BmgBI | CACGTC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 5 cut(s) | 305, 517, 556, 665, 833 |
| BmiI | GGNNCC | 4 cut(s) | 240, 306, 908, 1124 |
| BmrFI | CCNGG | 3 cut(s) | 669, 736, 1232 |
| BmsI | GCATC | 1 cut(s) | 1024 |
| BmtI | GCTAGC | 1 cut(s) | 1065 |
| BpiI | GAAGAC | 2 cut(s) | 29, 1099 |
| BpmI | CTGGAG | 2 cut(s) | 849, 1109 |
| BpuEI | CTTGAG | 2 cut(s) | 464, 898 |
| Bsa29I | ATCGAT | 1 cut(s) | 138 |
| BsaAI | YACGTR | 1 cut(s) | 623 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1035 |
| BsaHI | GRCGYC | 3 cut(s) | 130, 239, 491 |
| BsaJI | CCNNGG | 4 cut(s) | 700, 776, 910, 1230 |
| BsaWI | WCCGGW | 2 cut(s) | 106, 951 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 106, 126, 204, 461, 1132 |
| Bse1I | ACTGG | 3 cut(s) | 273, 376, 832 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1035 |
| BseBI | CCWGG | 3 cut(s) | 669, 736, 1232 |
| BseCI | ATCGAT | 1 cut(s) | 138 |
| BseDI | CCNNGG | 4 cut(s) | 700, 776, 910, 1230 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseJI | GATNNNNATC | 1 cut(s) | 1035 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 106, 126, 204, 461, 1132 |
| BseMII | CTCAG | 3 cut(s) | 32, 551, 930 |
| BseNI | ACTGG | 3 cut(s) | 273, 376, 832 |
| BseRI | GAGGAG | 2 cut(s) | 359, 1148 |
| BseSI | GKGCMC | 1 cut(s) | 1231 |
| BseXI | GCAGC | 5 cut(s) | 43, 181, 369, 1255, 1279 |
| BseYI | CCCAGC | 1 cut(s) | 152 |
| BsgI | GTGCAG | 1 cut(s) | 334 |
| Bsh1236I | CGCG | 2 cut(s) | 259, 475 |
| BshFI | GGCC | 5 cut(s) | 64, 211, 272, 518, 875 |
| BshNI | GGYRCC | 1 cut(s) | 238 |
| BshVI | ATCGAT | 1 cut(s) | 138 |
| BsiHKCI | CYCGRG | 2 cut(s) | 81, 316 |
| BsiSI | CCGG | 2 cut(s) | 107, 952 |
| BslFI | GGGAC | 2 cut(s) | 313, 1169 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 106, 126, 204, 461, 1132 |
| BsmAI | GTCTC | 1 cut(s) | 935 |
| BsmFI | GGGAC | 2 cut(s) | 313, 1169 |
| BsnI | GGCC | 5 cut(s) | 64, 211, 272, 518, 875 |
| BsoBI | CYCGRG | 2 cut(s) | 81, 316 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1231 |
| Bsp1407I | TGTACA | 1 cut(s) | 1217 |
| Bsp143I | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| Bsp19I | CCATGG | 2 cut(s) | 700, 910 |
| BspACI | CCGC | 6 cut(s) | 224, 413, 440, 473, 677, 965 |
| BspANI | GGCC | 5 cut(s) | 64, 211, 272, 518, 875 |
| BspCNI | CTCAG | 3 cut(s) | 31, 552, 931 |
| BspDI | ATCGAT | 1 cut(s) | 138 |
| BspFNI | CGCG | 2 cut(s) | 259, 475 |
| BspHI | TCATGA | 1 cut(s) | 1335 |
| BspLI | GGNNCC | 4 cut(s) | 240, 306, 908, 1124 |
| BspMI | ACCTGC | 1 cut(s) | 356 |
| BspOI | GCTAGC | 1 cut(s) | 1065 |
| BspPI | GGATC | 4 cut(s) | 169, 424, 966, 1136 |
| BspT107I | GGYRCC | 1 cut(s) | 238 |
| BsrBI | CCGCTC | 1 cut(s) | 965 |
| BsrGI | TGTACA | 1 cut(s) | 1217 |
| BsrI | ACTGG | 3 cut(s) | 273, 376, 832 |
| BssECI | CCNNGG | 4 cut(s) | 700, 776, 910, 1230 |
| BssMI | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| BssNI | GRCGYC | 3 cut(s) | 130, 239, 491 |
| BssT1I | CCWWGG | 3 cut(s) | 700, 776, 910 |
| Bst2UI | CCWGG | 3 cut(s) | 669, 736, 1232 |
| Bst4CI | ACNGT | 3 cut(s) | 573, 613, 1327 |
| Bst6I | CTCTTC | 2 cut(s) | 777, 813 |
| BstACI | GRCGYC | 3 cut(s) | 130, 239, 491 |
| BstAUI | TGTACA | 1 cut(s) | 1217 |
| BstBAI | YACGTR | 1 cut(s) | 623 |
| BstC8I | GCNNGC | 2 cut(s) | 1063, 1227 |
| BstDEI | CTNAG | 3 cut(s) | 18, 560, 939 |
| BstDSI | CCRYGG | 2 cut(s) | 700, 910 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstFNI | CGCG | 2 cut(s) | 259, 475 |
| BstH2I | RGCGCY | 2 cut(s) | 57, 242 |
| BstHHI | GCGC | 5 cut(s) | 56, 241, 259, 477, 544 |
| BstKTI | GATC | 8 cut(s) | 164, 359, 432, 754, 961, 1039, 1144, 1212 |
| BstMAI | GTCTC | 1 cut(s) | 935 |
| BstMBI | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 163, 448, 685, 702 |
| BstNI | CCWGG | 3 cut(s) | 669, 736, 1232 |
| BstSCI | CCNGG | 3 cut(s) | 667, 734, 1230 |
| BstSLI | GKGCMC | 1 cut(s) | 1231 |
| BstSNI | TACGTA | 1 cut(s) | 623 |
| BstUI | CGCG | 2 cut(s) | 259, 475 |
| BstV1I | GCAGC | 5 cut(s) | 43, 181, 369, 1255, 1279 |
| BstV2I | GAAGAC | 2 cut(s) | 29, 1099 |
| BstX2I | RGATCY | 1 cut(s) | 751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 249 |
| BstYI | RGATCY | 1 cut(s) | 751 |
| Bsu15I | ATCGAT | 1 cut(s) | 138 |
| BsuRI | GGCC | 5 cut(s) | 64, 211, 272, 518, 875 |
| BsuTUI | ATCGAT | 1 cut(s) | 138 |
| BtgI | CCRYGG | 2 cut(s) | 700, 910 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtrI | CACGTC | 1 cut(s) | 124 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| BtsI | GCAGTG | 2 cut(s) | 1072, 1363 |
| BtsIMutI | CAGTG | 2 cut(s) | 1072, 1363 |
| BveI | ACCTGC | 1 cut(s) | 356 |
| Cac8I | GCNNGC | 2 cut(s) | 1063, 1227 |
| CaiI | CAGNNNCTG | 1 cut(s) | 382 |
| CciI | TCATGA | 1 cut(s) | 1335 |
| CfoI | GCGC | 5 cut(s) | 56, 241, 259, 477, 544 |
| Cfr13I | GGNCC | 5 cut(s) | 305, 517, 556, 665, 833 |
| ClaI | ATCGAT | 1 cut(s) | 138 |
| CseI | GACGC | 2 cut(s) | 119, 499 |
| CsiI | ACCWGGT | 1 cut(s) | 667 |
| Csp6I | GTAC | 4 cut(s) | 324, 620, 624, 1218 |
| CviAII | CATG | 5 cut(s) | 701, 911, 1130, 1213, 1336 |
| CviQI | GTAC | 4 cut(s) | 324, 620, 624, 1218 |
| DdeI | CTNAG | 3 cut(s) | 18, 560, 939 |
| DinI | GGCGCC | 1 cut(s) | 240 |
| DpnI | GATC | 8 cut(s) | 163, 358, 431, 753, 960, 1038, 1143, 1211 |
| DpnII | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| EaeI | YGGCCR | 2 cut(s) | 209, 270 |
| Eam1104I | CTCTTC | 2 cut(s) | 777, 813 |
| EarI | CTCTTC | 2 cut(s) | 777, 813 |
| Eco105I | TACGTA | 1 cut(s) | 623 |
| Eco130I | CCWWGG | 3 cut(s) | 700, 776, 910 |
| Eco147I | AGGCCT | 1 cut(s) | 875 |
| Eco32I | GATATC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 4 cut(s) | 305, 556, 665, 833 |
| Eco57I | CTGAAG | 1 cut(s) | 1240 |
| Eco88I | CYCGRG | 2 cut(s) | 81, 316 |
| EcoO109I | RGGNCCY | 3 cut(s) | 305, 517, 556 |
| EcoRI | GAATTC | 1 cut(s) | 1301 |
| EcoRII | CCWGG | 3 cut(s) | 667, 734, 1230 |
| EcoRV | GATATC | 1 cut(s) | 115 |
| EcoT14I | CCWWGG | 3 cut(s) | 700, 776, 910 |
| EgeI | GGCGCC | 1 cut(s) | 240 |
| EheI | GGCGCC | 1 cut(s) | 240 |
| ErhI | CCWWGG | 3 cut(s) | 700, 776, 910 |
| FaeI | CATG | 5 cut(s) | 704, 914, 1133, 1216, 1339 |
| FaqI | GGGAC | 2 cut(s) | 313, 1169 |
| FatI | CATG | 5 cut(s) | 700, 910, 1129, 1212, 1335 |
| FbaI | TGATCA | 1 cut(s) | 1036 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 195, 225, 383, 1244, 1268 |
| FokI | GGATG | 1 cut(s) | 122 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 195, 225, 383, 1244, 1268 |
| FspBI | CTAG | 8 cut(s) | 354, 479, 1005, 1026, 1062, 1154, 1203, 1384 |
| FspI | TGCGCA | 1 cut(s) | 543 |
| GlaI | GCGC | 5 cut(s) | 55, 240, 258, 476, 543 |
| GluI | GCNGC | 6 cut(s) | 57, 195, 225, 383, 1244, 1268 |
| GsaI | CCCAGC | 1 cut(s) | 156 |
| GsuI | CTGGAG | 2 cut(s) | 849, 1109 |
| HaeII | RGCGCY | 2 cut(s) | 57, 242 |
| HaeIII | GGCC | 5 cut(s) | 64, 211, 272, 518, 875 |
| HapII | CCGG | 2 cut(s) | 107, 952 |
| HgaI | GACGC | 2 cut(s) | 119, 499 |
| HhaI | GCGC | 5 cut(s) | 56, 241, 259, 477, 544 |
| Hin1I | GRCGYC | 3 cut(s) | 130, 239, 491 |
| Hin1II | CATG | 5 cut(s) | 704, 914, 1133, 1216, 1339 |
| Hin6I | GCGC | 5 cut(s) | 54, 239, 257, 475, 542 |
| HinP1I | GCGC | 5 cut(s) | 54, 239, 257, 475, 542 |
| HinfI | GANTC | 8 cut(s) | 145, 767, 943, 1031, 1101, 1112, 1182, 1235 |
| HpaII | CCGG | 2 cut(s) | 107, 952 |
| HphI | GGTGA | 4 cut(s) | 44, 96, 301, 683 |
| Hpy166II | GTNNAC | 3 cut(s) | 674, 1218, 1330 |
| Hpy188I | TCNGA | 5 cut(s) | 21, 749, 940, 1036, 1259 |
| Hpy188III | TCNNGA | 6 cut(s) | 316, 559, 663, 845, 1306, 1336 |
| Hpy8I | GTNNAC | 3 cut(s) | 674, 1218, 1330 |
| HpyAV | CCTTC | 7 cut(s) | 111, 182, 446, 530, 637, 1172, 1264 |
| HpyCH4III | ACNGT | 3 cut(s) | 573, 613, 1327 |
| HpyCH4IV | ACGT | 4 cut(s) | 123, 183, 334, 622 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 351, 616, 1368 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 163, 448, 685, 702 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 560, 939 |
| HpySE526I | ACGT | 4 cut(s) | 123, 183, 334, 622 |
| Hsp92I | GRCGYC | 3 cut(s) | 130, 239, 491 |
| Hsp92II | CATG | 5 cut(s) | 704, 914, 1133, 1216, 1339 |
| HspAI | GCGC | 5 cut(s) | 54, 239, 257, 475, 542 |
| KasI | GGCGCC | 1 cut(s) | 238 |
| Ksp22I | TGATCA | 1 cut(s) | 1036 |
| Kzo9I | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| LmnI | GCTCC | 1 cut(s) | 1128 |
| Lsp1109I | GCAGC | 5 cut(s) | 43, 181, 369, 1255, 1279 |
| LweI | GCATC | 1 cut(s) | 1024 |
| MabI | ACCWGGT | 1 cut(s) | 667 |
| MaeI | CTAG | 8 cut(s) | 354, 479, 1005, 1026, 1062, 1154, 1203, 1384 |
| MaeII | ACGT | 4 cut(s) | 123, 183, 334, 622 |
| MaeIII | GTNAC | 3 cut(s) | 335, 633, 725 |
| MalI | GATC | 8 cut(s) | 163, 358, 431, 753, 960, 1038, 1143, 1211 |
| MbiI | CCGCTC | 1 cut(s) | 965 |
| MboI | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| MboII | GAAGA | 5 cut(s) | 34, 764, 830, 1104, 1351 |
| MfeI | CAATTG | 1 cut(s) | 1319 |
| MflI | RGATCY | 1 cut(s) | 751 |
| MhlI | GDGCHC | 1 cut(s) | 1231 |
| MlsI | TGGCCA | 1 cut(s) | 211 |
| MluCI | AATT | 7 cut(s) | 42, 200, 530, 804, 1106, 1301, 1319 |
| MluNI | TGGCCA | 1 cut(s) | 211 |
| Mly113I | GGCGCC | 1 cut(s) | 239 |
| MlyI | GAGTC | 2 cut(s) | 937, 1191 |
| MmeI | TCCRAC | 2 cut(s) | 936, 962 |
| Mox20I | TGGCCA | 1 cut(s) | 211 |
| MscI | TGGCCA | 1 cut(s) | 211 |
| MseI | TTAA | 3 cut(s) | 513, 798, 1011 |
| MslI | CAYNNNNRTG | 3 cut(s) | 186, 247, 705 |
| Msp20I | TGGCCA | 1 cut(s) | 211 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MspI | CCGG | 2 cut(s) | 107, 952 |
| MspR9I | CCNGG | 3 cut(s) | 669, 736, 1232 |
| MunI | CAATTG | 1 cut(s) | 1319 |
| MvaI | CCWGG | 3 cut(s) | 669, 736, 1232 |
| MvnI | CGCG | 2 cut(s) | 259, 475 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 163, 448, 685, 702 |
| NarI | GGCGCC | 1 cut(s) | 239 |
| NcoI | CCATGG | 2 cut(s) | 700, 910 |
| NdeII | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| NheI | GCTAGC | 1 cut(s) | 1061 |
| NlaIII | CATG | 5 cut(s) | 704, 914, 1133, 1216, 1339 |
| NlaIV | GGNNCC | 4 cut(s) | 240, 306, 908, 1124 |
| NmeAIII | GCCGAG | 1 cut(s) | 90 |
| NmuCI | GTSAC | 2 cut(s) | 633, 725 |
| NsbI | TGCGCA | 1 cut(s) | 543 |
| OliI | CACNNNNGTG | 1 cut(s) | 186 |
| PaeR7I | CTCGAG | 2 cut(s) | 81, 316 |
| PagI | TCATGA | 1 cut(s) | 1335 |
| PaqCI | CACCTGC | 1 cut(s) | 356 |
| PceI | AGGCCT | 1 cut(s) | 875 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 497 |
| PfeI | GAWTC | 6 cut(s) | 145, 767, 1031, 1101, 1112, 1235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 204 |
| PkrI | GCNGC | 6 cut(s) | 58, 196, 226, 384, 1245, 1269 |
| PleI | GAGTC | 2 cut(s) | 937, 1190 |
| PluTI | GGCGCC | 1 cut(s) | 242 |
| PpsI | GAGTC | 2 cut(s) | 937, 1190 |
| Ppu21I | YACGTR | 1 cut(s) | 623 |
| PpuMI | RGGWCCY | 2 cut(s) | 305, 556 |
| Psp5II | RGGWCCY | 2 cut(s) | 305, 556 |
| Psp6I | CCWGG | 3 cut(s) | 667, 734, 1230 |
| PspFI | CCCAGC | 1 cut(s) | 152 |
| PspGI | CCWGG | 3 cut(s) | 667, 734, 1230 |
| PspN4I | GGNNCC | 4 cut(s) | 240, 306, 908, 1124 |
| PspPI | GGNCC | 5 cut(s) | 305, 517, 556, 665, 833 |
| PspPPI | RGGWCCY | 2 cut(s) | 305, 556 |
| PspXI | VCTCGAGB | 1 cut(s) | 81 |
| PstNI | CAGNNNCTG | 1 cut(s) | 382 |
| PsuI | RGATCY | 1 cut(s) | 751 |
| PvuII | CAGCTG | 1 cut(s) | 152 |
| RsaI | GTAC | 4 cut(s) | 325, 621, 625, 1219 |
| RsaNI | GTAC | 4 cut(s) | 324, 620, 624, 1218 |
| RseI | CAYNNNNRTG | 3 cut(s) | 186, 247, 705 |
| SaqAI | TTAA | 3 cut(s) | 513, 798, 1011 |
| SatI | GCNGC | 6 cut(s) | 57, 195, 225, 383, 1244, 1268 |
| Sau3AI | GATC | 8 cut(s) | 161, 356, 429, 751, 958, 1036, 1141, 1209 |
| Sau96I | GGNCC | 5 cut(s) | 305, 517, 556, 665, 833 |
| SchI | GAGTC | 2 cut(s) | 937, 1191 |
| ScrFI | CCNGG | 3 cut(s) | 669, 736, 1232 |
| SduI | GDGCHC | 1 cut(s) | 1231 |
| SexAI | ACCWGGT | 1 cut(s) | 667 |
| SfaNI | GCATC | 1 cut(s) | 1024 |
| SfoI | GGCGCC | 1 cut(s) | 240 |
| Sfr274I | CTCGAG | 2 cut(s) | 81, 316 |
| SinI | GGWCC | 4 cut(s) | 305, 556, 665, 833 |
| SlaI | CTCGAG | 2 cut(s) | 81, 316 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 186, 247, 705 |
| SmlI | CTYRAG | 4 cut(s) | 81, 316, 443, 877 |
| SmoI | CTYRAG | 4 cut(s) | 81, 316, 443, 877 |
| SnaBI | TACGTA | 1 cut(s) | 623 |
| Sse9I | AATT | 7 cut(s) | 42, 200, 530, 804, 1106, 1301, 1319 |
| SseBI | AGGCCT | 1 cut(s) | 875 |
| SsiI | CCGC | 6 cut(s) | 224, 413, 440, 473, 677, 965 |
| SspDI | GGCGCC | 1 cut(s) | 238 |
| SspMI | CTAG | 8 cut(s) | 354, 479, 1005, 1026, 1062, 1154, 1203, 1384 |
| StuI | AGGCCT | 1 cut(s) | 875 |
| StyD4I | CCNGG | 3 cut(s) | 667, 734, 1230 |
| StyI | CCWWGG | 3 cut(s) | 700, 776, 910 |
| TaaI | ACNGT | 3 cut(s) | 573, 613, 1327 |
| TaiI | ACGT | 4 cut(s) | 126, 186, 337, 625 |
| TaqI | TCGA | 4 cut(s) | 82, 138, 317, 961 |
| TasI | AATT | 7 cut(s) | 42, 200, 530, 804, 1106, 1301, 1319 |
| TatI | WGTACW | 1 cut(s) | 1217 |
| TauI | GCSGC | 1 cut(s) | 227 |
| TfiI | GAWTC | 6 cut(s) | 145, 767, 1031, 1101, 1112, 1235 |
| Tru1I | TTAA | 3 cut(s) | 513, 798, 1011 |
| Tru9I | TTAA | 3 cut(s) | 513, 798, 1011 |
| TscAI | CASTG | 2 cut(s) | 1072, 1370 |
| TseFI | GTSAC | 2 cut(s) | 633, 725 |
| TseI | GCWGC | 5 cut(s) | 56, 194, 382, 1243, 1267 |
| Tsp45I | GTSAC | 2 cut(s) | 633, 725 |
| TspDTI | ATGAA | 5 cut(s) | 512, 816, 831, 1324, 1352 |
| TspGWI | ACGGA | 1 cut(s) | 830 |
| TspRI | CASTG | 2 cut(s) | 1072, 1370 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 204 |
| VpaK11BI | GGWCC | 4 cut(s) | 305, 556, 665, 833 |
| XapI | RAATTY | 4 cut(s) | 200, 804, 1106, 1301 |
| XhoI | CTCGAG | 2 cut(s) | 81, 316 |
| XspI | CTAG | 8 cut(s) | 354, 479, 1005, 1026, 1062, 1154, 1203, 1384 |