ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 171 |
| AccI | GTMKAC | 1 cut(s) | 551 |
| AciI | CCGC | 1 cut(s) | 545 |
| AclWI | GGATC | 1 cut(s) | 363 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcyI | GRCGYC | 1 cut(s) | 313 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 469 |
| AgsI | TTSAA | 2 cut(s) | 67, 287 |
| AjnI | CCWGG | 1 cut(s) | 554 |
| AluBI | AGCT | 3 cut(s) | 21, 129, 593 |
| AluI | AGCT | 3 cut(s) | 21, 129, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 602 |
| Alw26I | GTCTC | 1 cut(s) | 82 |
| Alw44I | GTGCAC | 1 cut(s) | 598 |
| AlwI | GGATC | 1 cut(s) | 363 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| AoxI | GGCC | 2 cut(s) | 89, 460 |
| ApaLI | GTGCAC | 1 cut(s) | 598 |
| ApeKI | GCWGC | 1 cut(s) | 42 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| AspLEI | GCGC | 1 cut(s) | 172 |
| AspS9I | GGNCC | 4 cut(s) | 70, 293, 461, 542 |
| AsuHPI | GGTGA | 2 cut(s) | 257, 398 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| AvaII | GGWCC | 3 cut(s) | 70, 293, 542 |
| BaeGI | GKGCMC | 1 cut(s) | 602 |
| Bbv12I | GWGCWC | 1 cut(s) | 602 |
| BbvI | GCAGC | 1 cut(s) | 54 |
| BccI | CCATC | 3 cut(s) | 188, 303, 452 |
| BciT130I | CCWGG | 1 cut(s) | 556 |
| BcoDI | GTCTC | 1 cut(s) | 82 |
| BfaI | CTAG | 4 cut(s) | 297, 306, 383, 468 |
| BfmI | CTRYAG | 2 cut(s) | 28, 40 |
| BisI | GCNGC | 1 cut(s) | 43 |
| BlsI | GCNGC | 1 cut(s) | 44 |
| Bme1390I | CCNGG | 1 cut(s) | 556 |
| Bme18I | GGWCC | 3 cut(s) | 70, 293, 542 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BmgT120I | GGNCC | 4 cut(s) | 70, 293, 461, 542 |
| BmrFI | CCNGG | 1 cut(s) | 556 |
| BmrI | ACTGGG | 1 cut(s) | 221 |
| BmuI | ACTGGG | 1 cut(s) | 221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 547 |
| BpmI | CTGGAG | 1 cut(s) | 134 |
| Bsa29I | ATCGAT | 1 cut(s) | 358 |
| BsaAI | YACGTR | 1 cut(s) | 377 |
| BsaHI | GRCGYC | 1 cut(s) | 313 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 538 |
| BsaWI | WCCGGW | 1 cut(s) | 203 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 244, 274 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 469 |
| Bse1I | ACTGG | 2 cut(s) | 151, 216 |
| BseBI | CCWGG | 1 cut(s) | 556 |
| BseCI | ATCGAT | 1 cut(s) | 358 |
| BseDI | CCNNGG | 2 cut(s) | 404, 538 |
| BseGI | GGATG | 2 cut(s) | 222, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 469 |
| BseMII | CTCAG | 1 cut(s) | 107 |
| BseNI | ACTGG | 2 cut(s) | 151, 216 |
| BseRI | GAGGAG | 1 cut(s) | 252 |
| BseSI | GKGCMC | 1 cut(s) | 602 |
| BseXI | GCAGC | 1 cut(s) | 54 |
| BshFI | GGCC | 2 cut(s) | 91, 462 |
| BshVI | ATCGAT | 1 cut(s) | 358 |
| BsiHKAI | GWGCWC | 1 cut(s) | 602 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiSI | CCGG | 1 cut(s) | 204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 469 |
| BsmAI | GTCTC | 1 cut(s) | 82 |
| BsnI | GGCC | 2 cut(s) | 91, 462 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| Bsp1286I | GDGCHC | 1 cut(s) | 602 |
| Bsp143I | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| BspACI | CCGC | 1 cut(s) | 545 |
| BspANI | GGCC | 2 cut(s) | 91, 462 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspDI | ATCGAT | 1 cut(s) | 358 |
| BspMAI | CTGCAG | 2 cut(s) | 32, 44 |
| BspPI | GGATC | 1 cut(s) | 363 |
| BsrI | ACTGG | 2 cut(s) | 151, 216 |
| BssECI | CCNNGG | 2 cut(s) | 404, 538 |
| BssMI | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| BssNI | GRCGYC | 1 cut(s) | 313 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 538 |
| Bst2UI | CCWGG | 1 cut(s) | 556 |
| Bst4CI | ACNGT | 1 cut(s) | 515 |
| BstACI | GRCGYC | 1 cut(s) | 313 |
| BstBAI | YACGTR | 1 cut(s) | 377 |
| BstDEI | CTNAG | 2 cut(s) | 17, 93 |
| BstEII | GGTNACC | 1 cut(s) | 386 |
| BstF5I | GGATG | 2 cut(s) | 222, 238 |
| BstHHI | GCGC | 1 cut(s) | 172 |
| BstKTI | GATC | 6 cut(s) | 99, 123, 358, 362, 382, 529 |
| BstMAI | GTCTC | 1 cut(s) | 82 |
| BstMBI | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 27, 330 |
| BstNI | CCWGG | 1 cut(s) | 556 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 547 |
| BstPI | GGTNACC | 1 cut(s) | 386 |
| BstSCI | CCNGG | 1 cut(s) | 554 |
| BstSFI | CTRYAG | 2 cut(s) | 28, 40 |
| BstSLI | GKGCMC | 1 cut(s) | 602 |
| BstV1I | GCAGC | 1 cut(s) | 54 |
| Bsu15I | ATCGAT | 1 cut(s) | 358 |
| BsuRI | GGCC | 2 cut(s) | 91, 462 |
| BsuTUI | ATCGAT | 1 cut(s) | 358 |
| BtsCI | GGATG | 2 cut(s) | 222, 238 |
| CfoI | GCGC | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 4 cut(s) | 70, 293, 461, 542 |
| ClaI | ATCGAT | 1 cut(s) | 358 |
| CseI | GACGC | 1 cut(s) | 302 |
| CsiI | ACCWGGT | 1 cut(s) | 554 |
| CviAII | CATG | 2 cut(s) | 363, 609 |
| CviJI | RGCY | 9 cut(s) | 21, 62, 91, 129, 324, 333, 462, 593, 636 |
| CviKI_1 | RGCY | 9 cut(s) | 21, 62, 91, 129, 324, 333, 462, 593, 636 |
| DdeI | CTNAG | 2 cut(s) | 17, 93 |
| DpnI | GATC | 6 cut(s) | 98, 122, 357, 361, 381, 528 |
| DpnII | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| DraI | TTTAAA | 1 cut(s) | 142 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 538 |
| Eco147I | AGGCCT | 1 cut(s) | 91 |
| Eco47I | GGWCC | 3 cut(s) | 70, 293, 542 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| Eco91I | GGTNACC | 1 cut(s) | 386 |
| EcoO109I | RGGNCCY | 2 cut(s) | 70, 293 |
| EcoO65I | GGTNACC | 1 cut(s) | 386 |
| EcoRII | CCWGG | 1 cut(s) | 554 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 538 |
| ErhI | CCWWGG | 2 cut(s) | 404, 538 |
| FaeI | CATG | 2 cut(s) | 366, 612 |
| FaiI | YATR | 6 cut(s) | 8, 270, 278, 330, 364, 610 |
| FatI | CATG | 2 cut(s) | 362, 608 |
| FblI | GTMKAC | 1 cut(s) | 551 |
| Fnu4HI | GCNGC | 1 cut(s) | 43 |
| FokI | GGATG | 2 cut(s) | 229, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 43 |
| FspBI | CTAG | 4 cut(s) | 297, 306, 383, 468 |
| FspI | TGCGCA | 1 cut(s) | 171 |
| GlaI | GCGC | 1 cut(s) | 171 |
| GluI | GCNGC | 1 cut(s) | 43 |
| GsuI | CTGGAG | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 91, 462 |
| HapII | CCGG | 1 cut(s) | 204 |
| HgaI | GACGC | 1 cut(s) | 302 |
| HhaI | GCGC | 1 cut(s) | 172 |
| Hin1I | GRCGYC | 1 cut(s) | 313 |
| Hin1II | CATG | 2 cut(s) | 366, 612 |
| Hin6I | GCGC | 1 cut(s) | 170 |
| HinP1I | GCGC | 1 cut(s) | 170 |
| HincII | GTYRAC | 1 cut(s) | 552 |
| HindII | GTYRAC | 1 cut(s) | 552 |
| HindIII | AAGCTT | 1 cut(s) | 127 |
| HinfI | GANTC | 3 cut(s) | 36, 395, 605 |
| HpaII | CCGG | 1 cut(s) | 204 |
| HphI | GGTGA | 2 cut(s) | 257, 398 |
| Hpy166II | GTNNAC | 4 cut(s) | 209, 518, 552, 600 |
| Hpy188I | TCNGA | 4 cut(s) | 96, 125, 349, 438 |
| Hpy188III | TCNNGA | 1 cut(s) | 339 |
| Hpy8I | GTNNAC | 4 cut(s) | 209, 518, 552, 600 |
| HpyAV | CCTTC | 3 cut(s) | 61, 232, 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 515 |
| HpyCH4IV | ACGT | 2 cut(s) | 344, 376 |
| HpyCH4V | TGCA | 4 cut(s) | 30, 42, 600, 631 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 27, 330 |
| HpyF3I | CTNAG | 2 cut(s) | 17, 93 |
| HpySE526I | ACGT | 2 cut(s) | 344, 376 |
| Hsp92I | GRCGYC | 1 cut(s) | 313 |
| Hsp92II | CATG | 2 cut(s) | 366, 612 |
| HspAI | GCGC | 1 cut(s) | 170 |
| Kzo9I | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| Lsp1109I | GCAGC | 1 cut(s) | 54 |
| MabI | ACCWGGT | 1 cut(s) | 554 |
| MaeI | CTAG | 4 cut(s) | 297, 306, 383, 468 |
| MaeII | ACGT | 2 cut(s) | 344, 376 |
| MaeIII | GTNAC | 5 cut(s) | 299, 386, 509, 568, 614 |
| MalI | GATC | 6 cut(s) | 98, 122, 357, 361, 381, 528 |
| MboI | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| MhlI | GDGCHC | 1 cut(s) | 602 |
| MluCI | AATT | 1 cut(s) | 432 |
| MmeI | TCCRAC | 1 cut(s) | 604 |
| MnlI | CCTC | 6 cut(s) | 102, 175, 223, 273, 284, 482 |
| MseI | TTAA | 3 cut(s) | 131, 141, 426 |
| MspI | CCGG | 1 cut(s) | 204 |
| MspR9I | CCNGG | 1 cut(s) | 556 |
| MvaI | CCWGG | 1 cut(s) | 556 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 27, 330 |
| NdeII | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| NlaIII | CATG | 2 cut(s) | 366, 612 |
| NmuCI | GTSAC | 2 cut(s) | 386, 614 |
| NsbI | TGCGCA | 1 cut(s) | 171 |
| PceI | AGGCCT | 1 cut(s) | 91 |
| PfeI | GAWTC | 3 cut(s) | 36, 395, 605 |
| PflFI | GACNNNGTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 1 cut(s) | 44 |
| Ppu21I | YACGTR | 1 cut(s) | 377 |
| PpuMI | RGGWCCY | 2 cut(s) | 70, 293 |
| PshAI | GACNNNNGTC | 1 cut(s) | 547 |
| Psp5II | RGGWCCY | 2 cut(s) | 70, 293 |
| Psp6I | CCWGG | 1 cut(s) | 554 |
| PspEI | GGTNACC | 1 cut(s) | 386 |
| PspGI | CCWGG | 1 cut(s) | 554 |
| PspPI | GGNCC | 4 cut(s) | 70, 293, 461, 542 |
| PspPPI | RGGWCCY | 2 cut(s) | 70, 293 |
| PstI | CTGCAG | 2 cut(s) | 32, 44 |
| PsyI | GACNNNGTC | 1 cut(s) | 74 |
| SalI | GTCGAC | 1 cut(s) | 550 |
| SaqAI | TTAA | 3 cut(s) | 131, 141, 426 |
| SatI | GCNGC | 1 cut(s) | 43 |
| Sau3AI | GATC | 6 cut(s) | 96, 120, 355, 359, 379, 526 |
| Sau96I | GGNCC | 4 cut(s) | 70, 293, 461, 542 |
| ScrFI | CCNGG | 1 cut(s) | 556 |
| SduI | GDGCHC | 1 cut(s) | 602 |
| SexAI | ACCWGGT | 1 cut(s) | 554 |
| SfcI | CTRYAG | 2 cut(s) | 28, 40 |
| SinI | GGWCC | 3 cut(s) | 70, 293, 542 |
| Sse9I | AATT | 1 cut(s) | 432 |
| SseBI | AGGCCT | 1 cut(s) | 91 |
| SsiI | CCGC | 1 cut(s) | 545 |
| SspMI | CTAG | 4 cut(s) | 297, 306, 383, 468 |
| StuI | AGGCCT | 1 cut(s) | 91 |
| StyD4I | CCNGG | 1 cut(s) | 554 |
| StyI | CCWWGG | 2 cut(s) | 404, 538 |
| TaaI | ACNGT | 1 cut(s) | 515 |
| TaiI | ACGT | 2 cut(s) | 347, 379 |
| TaqI | TCGA | 3 cut(s) | 273, 358, 551 |
| TasI | AATT | 1 cut(s) | 432 |
| TfiI | GAWTC | 3 cut(s) | 36, 395, 605 |
| Tru1I | TTAA | 3 cut(s) | 131, 141, 426 |
| Tru9I | TTAA | 3 cut(s) | 131, 141, 426 |
| TseFI | GTSAC | 2 cut(s) | 386, 614 |
| TseI | GCWGC | 1 cut(s) | 42 |
| Tsp45I | GTSAC | 2 cut(s) | 386, 614 |
| TspGWI | ACGGA | 2 cut(s) | 242, 617 |
| Tth111I | GACNNNGTC | 1 cut(s) | 74 |
| VneI | GTGCAC | 1 cut(s) | 598 |
| VpaK11BI | GGWCC | 3 cut(s) | 70, 293, 542 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XmiI | GTMKAC | 1 cut(s) | 551 |
| XspI | CTAG | 4 cut(s) | 297, 306, 383, 468 |