ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 147 | 8.1e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 849 |
| AccB1I | GGYRCC | 1 cut(s) | 565 |
| AcuI | CTGAAG | 2 cut(s) | 830, 842 |
| AcyI | GRCGYC | 1 cut(s) | 310 |
| AfaI | GTAC | 2 cut(s) | 644, 732 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 124, 575 |
| AflIII | ACRYGT | 1 cut(s) | 892 |
| AgsI | TTSAA | 6 cut(s) | 53, 151, 424, 515, 550, 781 |
| AjnI | CCWGG | 1 cut(s) | 618 |
| AleI | CACNNNNGTG | 1 cut(s) | 492 |
| AluBI | AGCT | 3 cut(s) | 379, 862, 901 |
| AluI | AGCT | 3 cut(s) | 379, 862, 901 |
| Alw21I | GWGCWC | 1 cut(s) | 544 |
| Alw26I | GTCTC | 1 cut(s) | 911 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 67, 344, 853 |
| AoxI | GGCC | 2 cut(s) | 45, 190 |
| AspLEI | GCGC | 1 cut(s) | 502 |
| AspS9I | GGNCC | 2 cut(s) | 45, 115 |
| AsuHPI | GGTGA | 2 cut(s) | 482, 590 |
| AvaII | GGWCC | 1 cut(s) | 115 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 99, 132 |
| BanI | GGYRCC | 1 cut(s) | 565 |
| BanII | GRGCYC | 1 cut(s) | 841 |
| BbsI | GAAGAC | 2 cut(s) | 621, 654 |
| Bbv12I | GWGCWC | 1 cut(s) | 544 |
| BccI | CCATC | 7 cut(s) | 116, 218, 284, 300, 343, 345, 698 |
| BciT130I | CCWGG | 1 cut(s) | 620 |
| BclI | TGATCA | 1 cut(s) | 580 |
| BcoDI | GTCTC | 1 cut(s) | 911 |
| BfaI | CTAG | 3 cut(s) | 206, 380, 503 |
| BfmI | CTRYAG | 1 cut(s) | 59 |
| BfoI | RGCGCY | 1 cut(s) | 503 |
| Bme1390I | CCNGG | 1 cut(s) | 620 |
| Bme18I | GGWCC | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 2 cut(s) | 45, 115 |
| BmiI | GGNNCC | 1 cut(s) | 567 |
| BmrFI | CCNGG | 1 cut(s) | 620 |
| BmsI | GCATC | 2 cut(s) | 350, 471 |
| BpiI | GAAGAC | 2 cut(s) | 621, 654 |
| BpmI | CTGGAG | 1 cut(s) | 947 |
| BsaBI | GATNNNNATC | 1 cut(s) | 355 |
| BsaHI | GRCGYC | 1 cut(s) | 310 |
| BsaJI | CCNNGG | 2 cut(s) | 401, 574 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 526, 556, 812, 842 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 124, 575 |
| Bse1I | ACTGG | 2 cut(s) | 322, 541 |
| Bse3DI | GCAATG | 1 cut(s) | 797 |
| Bse8I | GATNNNNATC | 1 cut(s) | 355 |
| BseBI | CCWGG | 1 cut(s) | 620 |
| BseDI | CCNNGG | 2 cut(s) | 401, 574 |
| BseGI | GGATG | 2 cut(s) | 238, 331 |
| BseJI | GATNNNNATC | 1 cut(s) | 355 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 124, 575 |
| BseMI | GCAATG | 1 cut(s) | 797 |
| BseMII | CTCAG | 3 cut(s) | 117, 157, 336 |
| BseNI | ACTGG | 2 cut(s) | 322, 541 |
| BseRI | GAGGAG | 2 cut(s) | 944, 947 |
| Bsh1285I | CGRYCG | 1 cut(s) | 43 |
| BshFI | GGCC | 2 cut(s) | 47, 192 |
| BshNI | GGYRCC | 1 cut(s) | 565 |
| BsiEI | CGRYCG | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 1 cut(s) | 544 |
| BsiSI | CCGG | 1 cut(s) | 198 |
| BslFI | GGGAC | 1 cut(s) | 572 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 124, 575 |
| BsmAI | GTCTC | 1 cut(s) | 911 |
| BsmBI | CGTCTC | 1 cut(s) | 911 |
| BsmFI | GGGAC | 1 cut(s) | 572 |
| BsmI | GAATGC | 1 cut(s) | 689 |
| BsnI | GGCC | 2 cut(s) | 47, 192 |
| Bsp1286I | GDGCHC | 2 cut(s) | 544, 841 |
| Bsp143I | GATC | 3 cut(s) | 40, 356, 580 |
| Bsp19I | CCATGG | 2 cut(s) | 401, 574 |
| BspANI | GGCC | 2 cut(s) | 47, 192 |
| BspCNI | CTCAG | 3 cut(s) | 116, 156, 337 |
| BspLI | GGNNCC | 1 cut(s) | 567 |
| BspMAI | CTGCAG | 1 cut(s) | 63 |
| BspT107I | GGYRCC | 1 cut(s) | 565 |
| BsrDI | GCAATG | 1 cut(s) | 797 |
| BsrI | ACTGG | 2 cut(s) | 322, 541 |
| BssECI | CCNNGG | 2 cut(s) | 401, 574 |
| BssMI | GATC | 3 cut(s) | 40, 356, 580 |
| BssNI | GRCGYC | 1 cut(s) | 310 |
| BssT1I | CCWWGG | 2 cut(s) | 401, 574 |
| Bst2UI | CCWGG | 1 cut(s) | 620 |
| Bst4CI | ACNGT | 1 cut(s) | 23 |
| Bst6I | CTCTTC | 1 cut(s) | 809 |
| BstACI | GRCGYC | 1 cut(s) | 310 |
| BstC8I | GCNNGC | 1 cut(s) | 678 |
| BstDEI | CTNAG | 3 cut(s) | 103, 143, 345 |
| BstDSI | CCRYGG | 2 cut(s) | 401, 574 |
| BstF5I | GGATG | 2 cut(s) | 238, 331 |
| BstH2I | RGCGCY | 1 cut(s) | 503 |
| BstHHI | GCGC | 1 cut(s) | 502 |
| BstKTI | GATC | 3 cut(s) | 43, 359, 583 |
| BstMAI | GTCTC | 1 cut(s) | 911 |
| BstMBI | GATC | 3 cut(s) | 40, 356, 580 |
| BstMCI | CGRYCG | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNI | CCWGG | 1 cut(s) | 620 |
| BstNSI | RCATGY | 3 cut(s) | 680, 896, 941 |
| BstSCI | CCNGG | 1 cut(s) | 618 |
| BstSFI | CTRYAG | 1 cut(s) | 59 |
| BstV2I | GAAGAC | 2 cut(s) | 621, 654 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 200, 913 |
| BsuRI | GGCC | 2 cut(s) | 47, 192 |
| BtgI | CCRYGG | 2 cut(s) | 401, 574 |
| BtgZI | GCGATG | 1 cut(s) | 319 |
| BtsCI | GGATG | 2 cut(s) | 238, 331 |
| BtsI | GCAGTG | 2 cut(s) | 56, 694 |
| BtsIMutI | CAGTG | 3 cut(s) | 56, 534, 694 |
| Cac8I | GCNNGC | 1 cut(s) | 678 |
| CaiI | CAGNNNCTG | 3 cut(s) | 67, 344, 853 |
| CfoI | GCGC | 1 cut(s) | 502 |
| Cfr13I | GGNCC | 2 cut(s) | 45, 115 |
| CseI | GACGC | 2 cut(s) | 299, 928 |
| CsiI | ACCWGGT | 1 cut(s) | 618 |
| Csp6I | GTAC | 2 cut(s) | 643, 731 |
| CviQI | GTAC | 2 cut(s) | 643, 731 |
| DdeI | CTNAG | 3 cut(s) | 103, 143, 345 |
| DpnI | GATC | 3 cut(s) | 42, 358, 582 |
| DpnII | GATC | 3 cut(s) | 40, 356, 580 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 849 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 849 |
| Eam1104I | CTCTTC | 1 cut(s) | 809 |
| EarI | CTCTTC | 1 cut(s) | 809 |
| Eco130I | CCWWGG | 2 cut(s) | 401, 574 |
| Eco24I | GRGCYC | 1 cut(s) | 841 |
| Eco47I | GGWCC | 1 cut(s) | 115 |
| Eco57I | CTGAAG | 2 cut(s) | 830, 842 |
| EcoRII | CCWGG | 1 cut(s) | 618 |
| EcoT14I | CCWWGG | 2 cut(s) | 401, 574 |
| EcoT38I | GRGCYC | 1 cut(s) | 841 |
| ErhI | CCWWGG | 2 cut(s) | 401, 574 |
| Esp3I | CGTCTC | 1 cut(s) | 911 |
| FaqI | GGGAC | 1 cut(s) | 572 |
| FbaI | TGATCA | 1 cut(s) | 580 |
| FokI | GGATG | 2 cut(s) | 245, 318 |
| FriOI | GRGCYC | 1 cut(s) | 841 |
| FspBI | CTAG | 3 cut(s) | 206, 380, 503 |
| GlaI | GCGC | 1 cut(s) | 501 |
| GsuI | CTGGAG | 1 cut(s) | 947 |
| HaeII | RGCGCY | 1 cut(s) | 503 |
| HaeIII | GGCC | 2 cut(s) | 47, 192 |
| HapII | CCGG | 1 cut(s) | 198 |
| HgaI | GACGC | 2 cut(s) | 299, 928 |
| HhaI | GCGC | 1 cut(s) | 502 |
| Hin1I | GRCGYC | 1 cut(s) | 310 |
| Hin6I | GCGC | 1 cut(s) | 500 |
| HinP1I | GCGC | 1 cut(s) | 500 |
| HinfI | GANTC | 7 cut(s) | 64, 70, 370, 648, 659, 850, 880 |
| HpaII | CCGG | 1 cut(s) | 198 |
| HphI | GGTGA | 2 cut(s) | 482, 590 |
| Hpy166II | GTNNAC | 1 cut(s) | 669 |
| Hpy188III | TCNNGA | 3 cut(s) | 374, 722, 926 |
| Hpy8I | GTNNAC | 1 cut(s) | 669 |
| Hpy99I | CGWCG | 1 cut(s) | 91 |
| HpyAV | CCTTC | 4 cut(s) | 106, 182, 446, 556 |
| HpyCH4III | ACNGT | 1 cut(s) | 23 |
| HpyCH4IV | ACGT | 3 cut(s) | 89, 525, 671 |
| HpyCH4V | TGCA | 7 cut(s) | 61, 284, 559, 676, 680, 687, 701 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 3 cut(s) | 103, 143, 345 |
| HpySE526I | ACGT | 3 cut(s) | 89, 525, 671 |
| Hsp92I | GRCGYC | 1 cut(s) | 310 |
| HspAI | GCGC | 1 cut(s) | 500 |
| Ksp22I | TGATCA | 1 cut(s) | 580 |
| Kzo9I | GATC | 3 cut(s) | 40, 356, 580 |
| LmnI | GCTCC | 2 cut(s) | 547, 934 |
| LpnPI | CCDG | 7 cut(s) | 211, 282, 303, 522, 605, 632, 911 |
| LweI | GCATC | 2 cut(s) | 350, 471 |
| MabI | ACCWGGT | 1 cut(s) | 618 |
| MaeI | CTAG | 3 cut(s) | 206, 380, 503 |
| MaeII | ACGT | 3 cut(s) | 89, 525, 671 |
| MaeIII | GTNAC | 1 cut(s) | 530 |
| MalI | GATC | 3 cut(s) | 42, 358, 582 |
| MboI | GATC | 3 cut(s) | 40, 356, 580 |
| MboII | GAAGA | 7 cut(s) | 91, 163, 384, 626, 654, 766, 826 |
| MhlI | GDGCHC | 2 cut(s) | 544, 841 |
| MluCI | AATT | 3 cut(s) | 166, 515, 911 |
| MlyI | GAGTC | 3 cut(s) | 58, 668, 859 |
| MmeI | TCCRAC | 1 cut(s) | 852 |
| MseI | TTAA | 1 cut(s) | 639 |
| MslI | CAYNNNNRTG | 4 cut(s) | 267, 492, 770, 790 |
| MspI | CCGG | 1 cut(s) | 198 |
| MspR9I | CCNGG | 1 cut(s) | 620 |
| Mva1269I | GAATGC | 1 cut(s) | 689 |
| MvaI | CCWGG | 1 cut(s) | 620 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NcoI | CCATGG | 2 cut(s) | 401, 574 |
| NdeII | GATC | 3 cut(s) | 40, 356, 580 |
| NlaIV | GGNNCC | 1 cut(s) | 567 |
| NspI | RCATGY | 3 cut(s) | 680, 896, 941 |
| OliI | CACNNNNGTG | 1 cut(s) | 492 |
| PaeI | GCATGC | 1 cut(s) | 680 |
| PciI | ACATGT | 1 cut(s) | 892 |
| PctI | GAATGC | 1 cut(s) | 689 |
| PfeI | GAWTC | 4 cut(s) | 70, 370, 648, 880 |
| Ple19I | CGATCG | 1 cut(s) | 43 |
| PleI | GAGTC | 3 cut(s) | 58, 667, 858 |
| PpsI | GAGTC | 3 cut(s) | 58, 667, 858 |
| PscI | ACATGT | 1 cut(s) | 892 |
| Psp6I | CCWGG | 1 cut(s) | 618 |
| PspGI | CCWGG | 1 cut(s) | 618 |
| PspN4I | GGNNCC | 1 cut(s) | 567 |
| PspPI | GGNCC | 2 cut(s) | 45, 115 |
| PstI | CTGCAG | 1 cut(s) | 63 |
| PstNI | CAGNNNCTG | 3 cut(s) | 67, 344, 853 |
| PvuI | CGATCG | 1 cut(s) | 43 |
| RsaI | GTAC | 2 cut(s) | 644, 732 |
| RsaNI | GTAC | 2 cut(s) | 643, 731 |
| RseI | CAYNNNNRTG | 4 cut(s) | 267, 492, 770, 790 |
| SaqAI | TTAA | 1 cut(s) | 639 |
| Sau3AI | GATC | 3 cut(s) | 40, 356, 580 |
| Sau96I | GGNCC | 2 cut(s) | 45, 115 |
| SchI | GAGTC | 3 cut(s) | 58, 668, 859 |
| ScrFI | CCNGG | 1 cut(s) | 620 |
| SduI | GDGCHC | 2 cut(s) | 544, 841 |
| SexAI | ACCWGGT | 1 cut(s) | 618 |
| SfaNI | GCATC | 2 cut(s) | 350, 471 |
| SfcI | CTRYAG | 1 cut(s) | 59 |
| SinI | GGWCC | 1 cut(s) | 115 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 267, 492, 770, 790 |
| SphI | GCATGC | 1 cut(s) | 680 |
| Sse9I | AATT | 3 cut(s) | 166, 515, 911 |
| SspMI | CTAG | 3 cut(s) | 206, 380, 503 |
| StyD4I | CCNGG | 1 cut(s) | 618 |
| StyI | CCWWGG | 2 cut(s) | 401, 574 |
| TaaI | ACNGT | 1 cut(s) | 23 |
| TaiI | ACGT | 3 cut(s) | 92, 528, 674 |
| TaqI | TCGA | 4 cut(s) | 248, 254, 373, 657 |
| TasI | AATT | 3 cut(s) | 166, 515, 911 |
| TfiI | GAWTC | 4 cut(s) | 70, 370, 648, 880 |
| Tru1I | TTAA | 1 cut(s) | 639 |
| Tru9I | TTAA | 1 cut(s) | 639 |
| TscAI | CASTG | 3 cut(s) | 63, 541, 694 |
| TspDTI | ATGAA | 3 cut(s) | 441, 776, 923 |
| TspRI | CASTG | 3 cut(s) | 63, 541, 694 |
| VpaK11BI | GGWCC | 1 cut(s) | 115 |
| XceI | RCATGY | 3 cut(s) | 680, 896, 941 |
| XspI | CTAG | 3 cut(s) | 206, 380, 503 |