ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 354 |
| AccBSI | CCGCTC | 1 cut(s) | 198 |
| AccI | GTMKAC | 1 cut(s) | 301 |
| AciI | CCGC | 3 cut(s) | 176, 198, 342 |
| AclWI | GGATC | 1 cut(s) | 456 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AcsI | RAATTY | 1 cut(s) | 534 |
| AfaI | GTAC | 4 cut(s) | 423, 476, 541, 779 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 151, 443, 801 |
| AgsI | TTSAA | 4 cut(s) | 249, 520, 688, 706 |
| AjnI | CCWGG | 1 cut(s) | 442 |
| AluBI | AGCT | 5 cut(s) | 672, 683, 965, 992, 1031 |
| AluI | AGCT | 5 cut(s) | 672, 683, 965, 992, 1031 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwI | GGATC | 1 cut(s) | 456 |
| AoxI | GGCC | 4 cut(s) | 61, 328, 606, 792 |
| ApeKI | GCWGC | 3 cut(s) | 44, 529, 989 |
| ApoI | RAATTY | 1 cut(s) | 534 |
| AspS9I | GGNCC | 4 cut(s) | 7, 61, 115, 607 |
| AsuHPI | GGTGA | 1 cut(s) | 773 |
| AvaII | GGWCC | 2 cut(s) | 7, 115 |
| BalI | TGGCCA | 1 cut(s) | 330 |
| BbvI | GCAGC | 3 cut(s) | 56, 541, 1001 |
| BccI | CCATC | 6 cut(s) | 218, 300, 339, 497, 752, 865 |
| BceAI | ACGGC | 2 cut(s) | 9, 48 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 518, 552 |
| BciT130I | CCWGG | 1 cut(s) | 444 |
| BclI | TGATCA | 1 cut(s) | 925 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 410, 417, 467 |
| BfmI | CTRYAG | 1 cut(s) | 915 |
| BfuAI | ACCTGC | 1 cut(s) | 354 |
| BisI | GCNGC | 3 cut(s) | 45, 530, 990 |
| BlsI | GCNGC | 3 cut(s) | 46, 531, 991 |
| BmcAI | AGTACT | 1 cut(s) | 779 |
| Bme1390I | CCNGG | 1 cut(s) | 444 |
| Bme18I | GGWCC | 2 cut(s) | 7, 115 |
| BmgT120I | GGNCC | 4 cut(s) | 7, 61, 115, 607 |
| BmiI | GGNNCC | 1 cut(s) | 9 |
| BmrFI | CCNGG | 1 cut(s) | 444 |
| BmsI | GCATC | 2 cut(s) | 31, 39 |
| BoxI | GACNNNNGTC | 1 cut(s) | 113 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 1 cut(s) | 170 |
| Bpu10I | CCTNAGC | 1 cut(s) | 966 |
| BpuEI | CTTGAG | 1 cut(s) | 998 |
| BsaBI | GATNNNNATC | 2 cut(s) | 657, 762 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 442, 443 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 151, 443, 801 |
| Bse1I | ACTGG | 1 cut(s) | 322 |
| Bse8I | GATNNNNATC | 2 cut(s) | 657, 762 |
| BseBI | CCWGG | 1 cut(s) | 444 |
| BseDI | CCNNGG | 3 cut(s) | 25, 442, 443 |
| BseGI | GGATG | 6 cut(s) | 165, 229, 238, 331, 868, 876 |
| BseJI | GATNNNNATC | 2 cut(s) | 657, 762 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 151, 443, 801 |
| BseMII | CTCAG | 2 cut(s) | 198, 560 |
| BseNI | ACTGG | 1 cut(s) | 322 |
| BseRI | GAGGAG | 1 cut(s) | 390 |
| BseXI | GCAGC | 3 cut(s) | 56, 541, 1001 |
| BsgI | GTGCAG | 1 cut(s) | 548 |
| BshFI | GGCC | 4 cut(s) | 63, 330, 608, 794 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 151, 443, 801 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| BsmI | GAATGC | 1 cut(s) | 991 |
| BsnI | GGCC | 4 cut(s) | 63, 330, 608, 794 |
| Bsp143I | GATC | 4 cut(s) | 448, 628, 763, 925 |
| BspACI | CCGC | 3 cut(s) | 176, 198, 342 |
| BspANI | GGCC | 4 cut(s) | 63, 330, 608, 794 |
| BspCNI | CTCAG | 2 cut(s) | 197, 559 |
| BspHI | TCATGA | 1 cut(s) | 280 |
| BspLI | GGNNCC | 1 cut(s) | 9 |
| BspMI | ACCTGC | 1 cut(s) | 354 |
| BspPI | GGATC | 1 cut(s) | 456 |
| BsrBI | CCGCTC | 1 cut(s) | 198 |
| BsrI | ACTGG | 1 cut(s) | 322 |
| BssECI | CCNNGG | 3 cut(s) | 25, 442, 443 |
| BssMI | GATC | 4 cut(s) | 448, 628, 763, 925 |
| BssNAI | GTATAC | 1 cut(s) | 302 |
| Bst1107I | GTATAC | 1 cut(s) | 302 |
| Bst2UI | CCWGG | 1 cut(s) | 444 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 494 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 717 |
| BstDEI | CTNAG | 4 cut(s) | 111, 184, 546, 966 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 799 |
| BstF5I | GGATG | 6 cut(s) | 165, 229, 238, 331, 868, 876 |
| BstKTI | GATC | 4 cut(s) | 451, 631, 766, 928 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 4 cut(s) | 448, 628, 763, 925 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 998 |
| BstNI | CCWGG | 1 cut(s) | 444 |
| BstNSI | RCATGY | 1 cut(s) | 719 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 113 |
| BstSCI | CCNGG | 1 cut(s) | 442 |
| BstSFI | CTRYAG | 1 cut(s) | 915 |
| BstV1I | GCAGC | 3 cut(s) | 56, 541, 1001 |
| BstZ17I | GTATAC | 1 cut(s) | 302 |
| BsuRI | GGCC | 4 cut(s) | 63, 330, 608, 794 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtsCI | GGATG | 6 cut(s) | 165, 229, 238, 331, 868, 876 |
| BtsI | GCAGTG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| BveI | ACCTGC | 1 cut(s) | 354 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 717 |
| CciI | TCATGA | 1 cut(s) | 280 |
| Cfr13I | GGNCC | 4 cut(s) | 7, 61, 115, 607 |
| Csp6I | GTAC | 4 cut(s) | 422, 475, 540, 778 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 341, 376 |
| CviAII | CATG | 8 cut(s) | 15, 133, 281, 393, 626, 716, 929, 941 |
| CviQI | GTAC | 4 cut(s) | 422, 475, 540, 778 |
| DdeI | CTNAG | 4 cut(s) | 111, 184, 546, 966 |
| DpnI | GATC | 4 cut(s) | 450, 630, 765, 927 |
| DpnII | GATC | 4 cut(s) | 448, 628, 763, 925 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| Eco147I | AGGCCT | 1 cut(s) | 794 |
| Eco47I | GGWCC | 2 cut(s) | 7, 115 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 799 |
| EcoO109I | RGGNCCY | 2 cut(s) | 7, 607 |
| EcoRII | CCWGG | 1 cut(s) | 442 |
| EcoT22I | ATGCAT | 1 cut(s) | 942 |
| FaeI | CATG | 8 cut(s) | 18, 136, 284, 396, 629, 719, 932, 944 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 74, 106 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| FatI | CATG | 8 cut(s) | 14, 132, 280, 392, 625, 715, 928, 940 |
| FauNDI | CATATG | 1 cut(s) | 936 |
| FbaI | TGATCA | 1 cut(s) | 925 |
| FblI | GTMKAC | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 3 cut(s) | 45, 530, 990 |
| FokI | GGATG | 6 cut(s) | 172, 236, 245, 318, 875, 883 |
| Fsp4HI | GCNGC | 3 cut(s) | 45, 530, 990 |
| FspBI | CTAG | 3 cut(s) | 410, 417, 467 |
| GluI | GCNGC | 3 cut(s) | 45, 530, 990 |
| GsuI | CTGGAG | 1 cut(s) | 170 |
| HaeIII | GGCC | 4 cut(s) | 63, 330, 608, 794 |
| HapII | CCGG | 1 cut(s) | 86 |
| Hin1II | CATG | 8 cut(s) | 18, 136, 284, 396, 629, 719, 932, 944 |
| HincII | GTYRAC | 1 cut(s) | 952 |
| HindII | GTYRAC | 1 cut(s) | 952 |
| HindIII | AAGCTT | 1 cut(s) | 1029 |
| HinfI | GANTC | 1 cut(s) | 839 |
| HpaII | CCGG | 1 cut(s) | 86 |
| HphI | GGTGA | 1 cut(s) | 773 |
| Hpy166II | GTNNAC | 3 cut(s) | 302, 475, 952 |
| Hpy188I | TCNGA | 4 cut(s) | 119, 502, 652, 768 |
| Hpy188III | TCNNGA | 5 cut(s) | 149, 281, 410, 755, 977 |
| Hpy8I | GTNNAC | 3 cut(s) | 302, 475, 952 |
| HpyAV | CCTTC | 3 cut(s) | 474, 733, 784 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 494 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 998 |
| HpyF3I | CTNAG | 4 cut(s) | 111, 184, 546, 966 |
| Hsp92II | CATG | 8 cut(s) | 18, 136, 284, 396, 629, 719, 932, 944 |
| Ksp22I | TGATCA | 1 cut(s) | 925 |
| Kzo9I | GATC | 4 cut(s) | 448, 628, 763, 925 |
| Lsp1109I | GCAGC | 3 cut(s) | 56, 541, 1001 |
| LweI | GCATC | 2 cut(s) | 31, 39 |
| MaeI | CTAG | 3 cut(s) | 410, 417, 467 |
| MaeIII | GTNAC | 1 cut(s) | 970 |
| MalI | GATC | 4 cut(s) | 450, 630, 765, 927 |
| MbiI | CCGCTC | 1 cut(s) | 198 |
| MboI | GATC | 4 cut(s) | 448, 628, 763, 925 |
| MboII | GAAGA | 1 cut(s) | 246 |
| MlsI | TGGCCA | 1 cut(s) | 330 |
| MluCI | AATT | 5 cut(s) | 19, 358, 534, 600, 957 |
| MluNI | TGGCCA | 1 cut(s) | 330 |
| MmeI | TCCRAC | 1 cut(s) | 348 |
| Mox20I | TGGCCA | 1 cut(s) | 330 |
| Mph1103I | ATGCAT | 1 cut(s) | 942 |
| MscI | TGGCCA | 1 cut(s) | 330 |
| MseI | TTAA | 1 cut(s) | 657 |
| MslI | CAYNNNNRTG | 2 cut(s) | 267, 939 |
| Msp20I | TGGCCA | 1 cut(s) | 330 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 1 cut(s) | 444 |
| Mva1269I | GAATGC | 1 cut(s) | 991 |
| MvaI | CCWGG | 1 cut(s) | 444 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 998 |
| NdeI | CATATG | 1 cut(s) | 936 |
| NdeII | GATC | 4 cut(s) | 448, 628, 763, 925 |
| NlaIII | CATG | 8 cut(s) | 18, 136, 284, 396, 629, 719, 932, 944 |
| NlaIV | GGNNCC | 1 cut(s) | 9 |
| NmuCI | GTSAC | 1 cut(s) | 970 |
| NsiI | ATGCAT | 1 cut(s) | 942 |
| NspI | RCATGY | 1 cut(s) | 719 |
| PaeI | GCATGC | 1 cut(s) | 719 |
| PagI | TCATGA | 1 cut(s) | 280 |
| PasI | CCCWGGG | 1 cut(s) | 443 |
| PceI | AGGCCT | 1 cut(s) | 794 |
| PctI | GAATGC | 1 cut(s) | 991 |
| PfeI | GAWTC | 1 cut(s) | 839 |
| PkrI | GCNGC | 3 cut(s) | 46, 531, 991 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| PshAI | GACNNNNGTC | 1 cut(s) | 113 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| Psp6I | CCWGG | 1 cut(s) | 442 |
| PspGI | CCWGG | 1 cut(s) | 442 |
| PspN4I | GGNNCC | 1 cut(s) | 9 |
| PspPI | GGNCC | 4 cut(s) | 7, 61, 115, 607 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| RsaI | GTAC | 4 cut(s) | 423, 476, 541, 779 |
| RsaNI | GTAC | 4 cut(s) | 422, 475, 540, 778 |
| RseI | CAYNNNNRTG | 2 cut(s) | 267, 939 |
| SaqAI | TTAA | 1 cut(s) | 657 |
| SatI | GCNGC | 3 cut(s) | 45, 530, 990 |
| Sau3AI | GATC | 4 cut(s) | 448, 628, 763, 925 |
| Sau96I | GGNCC | 4 cut(s) | 7, 61, 115, 607 |
| ScaI | AGTACT | 1 cut(s) | 779 |
| ScrFI | CCNGG | 1 cut(s) | 444 |
| SfaNI | GCATC | 2 cut(s) | 31, 39 |
| SfcI | CTRYAG | 1 cut(s) | 915 |
| SinI | GGWCC | 2 cut(s) | 7, 115 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 267, 939 |
| SmlI | CTYRAG | 1 cut(s) | 977 |
| SmoI | CTYRAG | 1 cut(s) | 977 |
| SphI | GCATGC | 1 cut(s) | 719 |
| Sse9I | AATT | 5 cut(s) | 19, 358, 534, 600, 957 |
| SseBI | AGGCCT | 1 cut(s) | 794 |
| SsiI | CCGC | 3 cut(s) | 176, 198, 342 |
| SspMI | CTAG | 3 cut(s) | 410, 417, 467 |
| StuI | AGGCCT | 1 cut(s) | 794 |
| StyD4I | CCNGG | 1 cut(s) | 442 |
| TaaI | ACNGT | 2 cut(s) | 170, 494 |
| TaqI | TCGA | 2 cut(s) | 189, 754 |
| TasI | AATT | 5 cut(s) | 19, 358, 534, 600, 957 |
| TatI | WGTACW | 1 cut(s) | 777 |
| TfiI | GAWTC | 1 cut(s) | 839 |
| Tru1I | TTAA | 1 cut(s) | 657 |
| Tru9I | TTAA | 1 cut(s) | 657 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseFI | GTSAC | 1 cut(s) | 970 |
| TseI | GCWGC | 3 cut(s) | 44, 529, 989 |
| Tsp45I | GTSAC | 1 cut(s) | 970 |
| TspDTI | ATGAA | 6 cut(s) | 149, 179, 269, 297, 381, 998 |
| TspGWI | ACGGA | 3 cut(s) | 134, 426, 875 |
| TspRI | CASTG | 1 cut(s) | 54 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 115 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 799 |
| XapI | RAATTY | 1 cut(s) | 534 |
| XbaI | TCTAGA | 1 cut(s) | 409 |
| XceI | RCATGY | 1 cut(s) | 719 |
| XmiI | GTMKAC | 1 cut(s) | 301 |
| XspI | CTAG | 3 cut(s) | 410, 417, 467 |
| ZrmI | AGTACT | 1 cut(s) | 779 |
| Zsp2I | ATGCAT | 1 cut(s) | 942 |