Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 372 |
| AclWI | GGATC | 1 cut(s) | 270 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 48 |
| AflIII | ACRYGT | 1 cut(s) | 6 |
| AjnI | CCWGG | 2 cut(s) | 232, 257 |
| AluBI | AGCT | 1 cut(s) | 349 |
| AluI | AGCT | 1 cut(s) | 349 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| Alw26I | GTCTC | 1 cut(s) | 183 |
| AlwI | GGATC | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 336 |
| ApeKI | GCWGC | 2 cut(s) | 145, 239 |
| AspLEI | GCGC | 1 cut(s) | 400 |
| AspS9I | GGNCC | 1 cut(s) | 421 |
| AsuC2I | CCSGG | 1 cut(s) | 272 |
| AvaII | GGWCC | 1 cut(s) | 421 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BbvI | GCAGC | 2 cut(s) | 157, 251 |
| BccI | CCATC | 1 cut(s) | 347 |
| BceAI | ACGGC | 3 cut(s) | 158, 208, 241 |
| BciT130I | CCWGG | 2 cut(s) | 234, 259 |
| BcnI | CCSGG | 1 cut(s) | 272 |
| BcoDI | GTCTC | 1 cut(s) | 183 |
| BfaI | CTAG | 2 cut(s) | 48, 104 |
| BfoI | RGCGCY | 1 cut(s) | 401 |
| BisI | GCNGC | 2 cut(s) | 146, 240 |
| BlsI | GCNGC | 2 cut(s) | 147, 241 |
| Bme1390I | CCNGG | 3 cut(s) | 234, 259, 272 |
| Bme18I | GGWCC | 1 cut(s) | 421 |
| BmgT120I | GGNCC | 1 cut(s) | 421 |
| BmrFI | CCNGG | 3 cut(s) | 234, 259, 272 |
| BmsI | GCATC | 2 cut(s) | 160, 428 |
| BpuMI | CCSGG | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 4 cut(s) | 258, 299, 339, 424 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 48 |
| Bse1I | ACTGG | 2 cut(s) | 220, 420 |
| BseBI | CCWGG | 2 cut(s) | 234, 259 |
| BseDI | CCNNGG | 4 cut(s) | 258, 299, 339, 424 |
| BseGI | GGATG | 2 cut(s) | 358, 443 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 48 |
| BseNI | ACTGG | 2 cut(s) | 220, 420 |
| BseXI | GCAGC | 2 cut(s) | 157, 251 |
| BseYI | CCCAGC | 3 cut(s) | 95, 310, 400 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BshFI | GGCC | 1 cut(s) | 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BsiSI | CCGG | 1 cut(s) | 271 |
| BslFI | GGGAC | 1 cut(s) | 114 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 48 |
| BsmAI | GTCTC | 1 cut(s) | 183 |
| BsmBI | CGTCTC | 1 cut(s) | 183 |
| BsmFI | GGGAC | 1 cut(s) | 114 |
| BsnI | GGCC | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 2 cut(s) | 132, 262 |
| BspANI | GGCC | 1 cut(s) | 338 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BsrI | ACTGG | 2 cut(s) | 220, 420 |
| BssECI | CCNNGG | 4 cut(s) | 258, 299, 339, 424 |
| BssMI | GATC | 2 cut(s) | 132, 262 |
| BssT1I | CCWWGG | 2 cut(s) | 339, 424 |
| Bst2UI | CCWGG | 2 cut(s) | 234, 259 |
| Bst4CI | ACNGT | 2 cut(s) | 293, 300 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDEI | CTNAG | 1 cut(s) | 450 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 46 |
| BstF5I | GGATG | 2 cut(s) | 358, 443 |
| BstH2I | RGCGCY | 1 cut(s) | 401 |
| BstHHI | GCGC | 1 cut(s) | 400 |
| BstKTI | GATC | 2 cut(s) | 135, 265 |
| BstMAI | GTCTC | 1 cut(s) | 183 |
| BstMBI | GATC | 2 cut(s) | 132, 262 |
| BstNI | CCWGG | 2 cut(s) | 234, 259 |
| BstSCI | CCNGG | 3 cut(s) | 232, 257, 270 |
| BstV1I | GCAGC | 2 cut(s) | 157, 251 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 338 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 358, 443 |
| BtsI | GCAGTG | 1 cut(s) | 180 |
| BtsIMutI | CAGTG | 2 cut(s) | 180, 213 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CfoI | GCGC | 1 cut(s) | 400 |
| Cfr13I | GGNCC | 1 cut(s) | 421 |
| CviAII | CATG | 1 cut(s) | 368 |
| CviJI | RGCY | 6 cut(s) | 85, 95, 148, 195, 338, 349 |
| CviKI_1 | RGCY | 6 cut(s) | 85, 95, 148, 195, 338, 349 |
| DdeI | CTNAG | 1 cut(s) | 450 |
| DpnI | GATC | 2 cut(s) | 134, 264 |
| DpnII | GATC | 2 cut(s) | 132, 262 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 372 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 372 |
| Eco130I | CCWWGG | 2 cut(s) | 339, 424 |
| Eco47I | GGWCC | 1 cut(s) | 421 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 46 |
| EcoRII | CCWGG | 2 cut(s) | 232, 257 |
| EcoT14I | CCWWGG | 2 cut(s) | 339, 424 |
| ErhI | CCWWGG | 2 cut(s) | 339, 424 |
| Esp3I | CGTCTC | 1 cut(s) | 183 |
| FaeI | CATG | 1 cut(s) | 371 |
| FaiI | YATR | 8 cut(s) | 81, 115, 244, 308, 359, 369, 408, 435 |
| FaqI | GGGAC | 1 cut(s) | 114 |
| FatI | CATG | 1 cut(s) | 367 |
| Fnu4HI | GCNGC | 2 cut(s) | 146, 240 |
| FokI | GGATG | 1 cut(s) | 365 |
| Fsp4HI | GCNGC | 2 cut(s) | 146, 240 |
| FspBI | CTAG | 2 cut(s) | 48, 104 |
| GlaI | GCGC | 1 cut(s) | 399 |
| GluI | GCNGC | 2 cut(s) | 146, 240 |
| GsaI | CCCAGC | 3 cut(s) | 99, 314, 404 |
| HaeII | RGCGCY | 1 cut(s) | 401 |
| HaeIII | GGCC | 1 cut(s) | 338 |
| HapII | CCGG | 1 cut(s) | 271 |
| HhaI | GCGC | 1 cut(s) | 400 |
| Hin1II | CATG | 1 cut(s) | 371 |
| Hin6I | GCGC | 1 cut(s) | 398 |
| HinP1I | GCGC | 1 cut(s) | 398 |
| HpaII | CCGG | 1 cut(s) | 271 |
| Hpy166II | GTNNAC | 3 cut(s) | 296, 421, 447 |
| Hpy188I | TCNGA | 2 cut(s) | 60, 392 |
| Hpy188III | TCNNGA | 1 cut(s) | 16 |
| Hpy8I | GTNNAC | 3 cut(s) | 296, 421, 447 |
| HpyAV | CCTTC | 2 cut(s) | 159, 179 |
| HpyCH4III | ACNGT | 2 cut(s) | 293, 300 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 2 cut(s) | 173, 239 |
| HpyF3I | CTNAG | 1 cut(s) | 450 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 1 cut(s) | 371 |
| HspAI | GCGC | 1 cut(s) | 398 |
| Kzo9I | GATC | 2 cut(s) | 132, 262 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 251 |
| LweI | GCATC | 2 cut(s) | 160, 428 |
| MaeI | CTAG | 2 cut(s) | 48, 104 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MalI | GATC | 2 cut(s) | 134, 264 |
| MboI | GATC | 2 cut(s) | 132, 262 |
| MboII | GAAGA | 1 cut(s) | 257 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MluCI | AATT | 2 cut(s) | 19, 89 |
| MnlI | CCTC | 4 cut(s) | 52, 377, 388, 403 |
| MseI | TTAA | 3 cut(s) | 68, 129, 321 |
| MspI | CCGG | 1 cut(s) | 271 |
| MspR9I | CCNGG | 3 cut(s) | 234, 259, 272 |
| MvaI | CCWGG | 2 cut(s) | 234, 259 |
| NciI | CCSGG | 1 cut(s) | 272 |
| NdeII | GATC | 2 cut(s) | 132, 262 |
| NlaIII | CATG | 1 cut(s) | 371 |
| PkrI | GCNGC | 2 cut(s) | 147, 241 |
| Psp6I | CCWGG | 2 cut(s) | 232, 257 |
| PspFI | CCCAGC | 3 cut(s) | 95, 310, 400 |
| PspGI | CCWGG | 2 cut(s) | 232, 257 |
| PspPI | GGNCC | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| SaqAI | TTAA | 3 cut(s) | 68, 129, 321 |
| SatI | GCNGC | 2 cut(s) | 146, 240 |
| Sau3AI | GATC | 2 cut(s) | 132, 262 |
| Sau96I | GGNCC | 1 cut(s) | 421 |
| ScrFI | CCNGG | 3 cut(s) | 234, 259, 272 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SetI | ASST | 7 cut(s) | 9, 109, 161, 238, 351, 388, 426 |
| SfaNI | GCATC | 2 cut(s) | 160, 428 |
| SinI | GGWCC | 1 cut(s) | 421 |
| Sse9I | AATT | 2 cut(s) | 19, 89 |
| SspI | AATATT | 1 cut(s) | 64 |
| SspMI | CTAG | 2 cut(s) | 48, 104 |
| StyD4I | CCNGG | 3 cut(s) | 232, 257, 270 |
| StyI | CCWWGG | 2 cut(s) | 339, 424 |
| TaaI | ACNGT | 2 cut(s) | 293, 300 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TasI | AATT | 2 cut(s) | 19, 89 |
| Tru1I | TTAA | 3 cut(s) | 68, 129, 321 |
| Tru9I | TTAA | 3 cut(s) | 68, 129, 321 |
| TscAI | CASTG | 2 cut(s) | 180, 220 |
| TseI | GCWGC | 2 cut(s) | 145, 239 |
| TspDTI | ATGAA | 4 cut(s) | 17, 198, 339, 384 |
| TspRI | CASTG | 2 cut(s) | 180, 220 |
| VpaK11BI | GGWCC | 1 cut(s) | 421 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 46 |
| XspI | CTAG | 2 cut(s) | 48, 104 |