ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 203 | 1e-14 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 292 |
| AatII | GACGTC | 1 cut(s) | 618 |
| Acc36I | ACCTGC | 1 cut(s) | 789 |
| AccB1I | GGYRCC | 2 cut(s) | 258, 717 |
| AciI | CCGC | 1 cut(s) | 45 |
| AcoI | YGGCCR | 1 cut(s) | 186 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcyI | GRCGYC | 2 cut(s) | 615, 718 |
| AfaI | GTAC | 2 cut(s) | 358, 803 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 656 |
| AgsI | TTSAA | 2 cut(s) | 166, 424 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 3 cut(s) | 359, 551, 629 |
| AluBI | AGCT | 4 cut(s) | 56, 397, 430, 487 |
| AluI | AGCT | 4 cut(s) | 56, 397, 430, 487 |
| Alw21I | GWGCWC | 1 cut(s) | 544 |
| Alw26I | GTCTC | 3 cut(s) | 278, 304, 651 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 804 |
| AoxI | GGCC | 1 cut(s) | 186 |
| ApeKI | GCWGC | 4 cut(s) | 397, 484, 626, 691 |
| AseI | ATTAAT | 1 cut(s) | 33 |
| AspLEI | GCGC | 2 cut(s) | 720, 814 |
| AspS9I | GGNCC | 2 cut(s) | 294, 560 |
| AsuC2I | CCSGG | 1 cut(s) | 190 |
| AsuHPI | GGTGA | 2 cut(s) | 323, 470 |
| AvaII | GGWCC | 2 cut(s) | 294, 560 |
| BanI | GGYRCC | 2 cut(s) | 258, 717 |
| BbsI | GAAGAC | 1 cut(s) | 730 |
| Bbv12I | GWGCWC | 1 cut(s) | 544 |
| BbvI | GCAGC | 4 cut(s) | 384, 496, 638, 703 |
| BccI | CCATC | 3 cut(s) | 218, 449, 783 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 165, 199 |
| BciT130I | CCWGG | 3 cut(s) | 361, 553, 631 |
| BclI | TGATCA | 1 cut(s) | 637 |
| BcnI | CCSGG | 1 cut(s) | 190 |
| BcoDI | GTCTC | 3 cut(s) | 278, 304, 651 |
| BfaI | CTAG | 2 cut(s) | 272, 714 |
| BfoI | RGCGCY | 1 cut(s) | 721 |
| BfuAI | ACCTGC | 1 cut(s) | 789 |
| BisI | GCNGC | 4 cut(s) | 398, 485, 627, 692 |
| BlsI | GCNGC | 4 cut(s) | 399, 486, 628, 693 |
| Bme1390I | CCNGG | 4 cut(s) | 190, 361, 553, 631 |
| Bme18I | GGWCC | 2 cut(s) | 294, 560 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 2 cut(s) | 294, 560 |
| BmiI | GGNNCC | 3 cut(s) | 260, 295, 719 |
| BmrFI | CCNGG | 4 cut(s) | 190, 361, 553, 631 |
| BmsI | GCATC | 4 cut(s) | 471, 487, 558, 799 |
| BpiI | GAAGAC | 1 cut(s) | 730 |
| BpmI | CTGGAG | 1 cut(s) | 170 |
| Bpu10I | CCTNAGC | 1 cut(s) | 441 |
| BpuMI | CCSGG | 1 cut(s) | 190 |
| BsaBI | GATNNNNATC | 1 cut(s) | 250 |
| BsaHI | GRCGYC | 2 cut(s) | 615, 718 |
| BsaJI | CCNNGG | 2 cut(s) | 401, 630 |
| BsaWI | WCCGGW | 1 cut(s) | 296 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 785, 815 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 656 |
| Bse118I | RCCGGY | 2 cut(s) | 85, 576 |
| Bse1I | ACTGG | 3 cut(s) | 210, 698, 752 |
| Bse8I | GATNNNNATC | 1 cut(s) | 250 |
| BseBI | CCWGG | 3 cut(s) | 361, 553, 631 |
| BseDI | CCNNGG | 2 cut(s) | 401, 630 |
| BseGI | GGATG | 4 cut(s) | 460, 502, 666, 794 |
| BseJI | GATNNNNATC | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BseMII | CTCAG | 2 cut(s) | 407, 455 |
| BseNI | ACTGG | 3 cut(s) | 210, 698, 752 |
| BseX3I | CGGCCG | 1 cut(s) | 186 |
| BseXI | GCAGC | 4 cut(s) | 384, 496, 638, 703 |
| BsgI | GTGCAG | 1 cut(s) | 817 |
| Bsh1285I | CGRYCG | 2 cut(s) | 189, 248 |
| BshFI | GGCC | 1 cut(s) | 188 |
| BshNI | GGYRCC | 2 cut(s) | 258, 717 |
| BsiEI | CGRYCG | 2 cut(s) | 189, 248 |
| BsiHKAI | GWGCWC | 1 cut(s) | 544 |
| BsiSI | CCGG | 6 cut(s) | 86, 189, 297, 563, 577, 623 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BsmAI | GTCTC | 3 cut(s) | 278, 304, 651 |
| BsnI | GGCC | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 1 cut(s) | 544 |
| Bsp143I | GATC | 4 cut(s) | 245, 268, 637, 661 |
| BspACI | CCGC | 1 cut(s) | 45 |
| BspANI | GGCC | 1 cut(s) | 188 |
| BspCNI | CTCAG | 2 cut(s) | 406, 454 |
| BspLI | GGNNCC | 3 cut(s) | 260, 295, 719 |
| BspMI | ACCTGC | 1 cut(s) | 789 |
| BspQI | GCTCTTC | 1 cut(s) | 494 |
| BspT107I | GGYRCC | 2 cut(s) | 258, 717 |
| BsrFI | RCCGGY | 2 cut(s) | 85, 576 |
| BsrI | ACTGG | 3 cut(s) | 210, 698, 752 |
| BssAI | RCCGGY | 2 cut(s) | 85, 576 |
| BssECI | CCNNGG | 2 cut(s) | 401, 630 |
| BssMI | GATC | 4 cut(s) | 245, 268, 637, 661 |
| BssNI | GRCGYC | 2 cut(s) | 615, 718 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst2UI | CCWGG | 3 cut(s) | 361, 553, 631 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 335 |
| Bst6I | CTCTTC | 1 cut(s) | 494 |
| BstACI | GRCGYC | 2 cut(s) | 615, 718 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 804 |
| BstC8I | GCNNGC | 3 cut(s) | 54, 87, 705 |
| BstDEI | CTNAG | 3 cut(s) | 101, 393, 441 |
| BstEII | GGTNACC | 1 cut(s) | 329 |
| BstF5I | GGATG | 4 cut(s) | 460, 502, 666, 794 |
| BstH2I | RGCGCY | 1 cut(s) | 721 |
| BstHHI | GCGC | 2 cut(s) | 720, 814 |
| BstKTI | GATC | 4 cut(s) | 248, 271, 640, 664 |
| BstMAI | GTCTC | 3 cut(s) | 278, 304, 651 |
| BstMBI | GATC | 4 cut(s) | 245, 268, 637, 661 |
| BstMCI | CGRYCG | 2 cut(s) | 189, 248 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 53, 700, 782, 804, 820 |
| BstNI | CCWGG | 3 cut(s) | 361, 553, 631 |
| BstPI | GGTNACC | 1 cut(s) | 329 |
| BstSCI | CCNGG | 4 cut(s) | 188, 359, 551, 629 |
| BstV1I | GCAGC | 4 cut(s) | 384, 496, 638, 703 |
| BstV2I | GAAGAC | 1 cut(s) | 730 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 552 |
| BstZI | CGGCCG | 1 cut(s) | 186 |
| BsuRI | GGCC | 1 cut(s) | 188 |
| BtgZI | GCGATG | 2 cut(s) | 581, 822 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsCI | GGATG | 4 cut(s) | 460, 502, 666, 794 |
| BtsI | GCAGTG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 3 cut(s) | 54, 705, 745 |
| BveI | ACCTGC | 1 cut(s) | 789 |
| Cac8I | GCNNGC | 3 cut(s) | 54, 87, 705 |
| CaiI | CAGNNNCTG | 1 cut(s) | 804 |
| CfoI | GCGC | 2 cut(s) | 720, 814 |
| Cfr10I | RCCGGY | 2 cut(s) | 85, 576 |
| Cfr13I | GGNCC | 2 cut(s) | 294, 560 |
| CseI | GACGC | 1 cut(s) | 683 |
| CsiI | ACCWGGT | 1 cut(s) | 359 |
| Csp6I | GTAC | 2 cut(s) | 357, 802 |
| CviAII | CATG | 3 cut(s) | 133, 606, 656 |
| CviJI | RGCY | 9 cut(s) | 56, 85, 188, 209, 397, 430, 487, 629, 785 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 85, 188, 209, 397, 430, 487, 629, 785 |
| CviQI | GTAC | 2 cut(s) | 357, 802 |
| DdeI | CTNAG | 3 cut(s) | 101, 393, 441 |
| DinI | GGCGCC | 1 cut(s) | 719 |
| DpnI | GATC | 4 cut(s) | 247, 270, 639, 663 |
| DpnII | GATC | 4 cut(s) | 245, 268, 637, 661 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 292 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 292 |
| EaeI | YGGCCR | 1 cut(s) | 186 |
| EagI | CGGCCG | 1 cut(s) | 186 |
| Eam1104I | CTCTTC | 1 cut(s) | 494 |
| EarI | CTCTTC | 1 cut(s) | 494 |
| EclXI | CGGCCG | 1 cut(s) | 186 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco47I | GGWCC | 2 cut(s) | 294, 560 |
| Eco52I | CGGCCG | 1 cut(s) | 186 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| Eco91I | GGTNACC | 1 cut(s) | 329 |
| EcoO65I | GGTNACC | 1 cut(s) | 329 |
| EcoRII | CCWGG | 3 cut(s) | 359, 551, 629 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| EgeI | GGCGCC | 1 cut(s) | 719 |
| EheI | GGCGCC | 1 cut(s) | 719 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| FaeI | CATG | 3 cut(s) | 136, 609, 659 |
| FaiI | YATR | 9 cut(s) | 134, 198, 212, 327, 338, 607, 653, 657, 770 |
| FatI | CATG | 3 cut(s) | 132, 605, 655 |
| FbaI | TGATCA | 1 cut(s) | 637 |
| Fnu4HI | GCNGC | 4 cut(s) | 398, 485, 627, 692 |
| FokI | GGATG | 4 cut(s) | 467, 509, 653, 801 |
| Fsp4HI | GCNGC | 4 cut(s) | 398, 485, 627, 692 |
| FspBI | CTAG | 2 cut(s) | 272, 714 |
| GlaI | GCGC | 2 cut(s) | 719, 813 |
| GluI | GCNGC | 4 cut(s) | 398, 485, 627, 692 |
| GsuI | CTGGAG | 1 cut(s) | 170 |
| HaeII | RGCGCY | 1 cut(s) | 721 |
| HaeIII | GGCC | 1 cut(s) | 188 |
| HapII | CCGG | 6 cut(s) | 86, 189, 297, 563, 577, 623 |
| HgaI | GACGC | 1 cut(s) | 683 |
| HhaI | GCGC | 2 cut(s) | 720, 814 |
| Hin1I | GRCGYC | 2 cut(s) | 615, 718 |
| Hin1II | CATG | 3 cut(s) | 136, 609, 659 |
| Hin6I | GCGC | 2 cut(s) | 718, 812 |
| HinP1I | GCGC | 2 cut(s) | 718, 812 |
| HinfI | GANTC | 6 cut(s) | 41, 70, 389, 531, 742, 751 |
| HpaII | CCGG | 6 cut(s) | 86, 189, 297, 563, 577, 623 |
| HphI | GGTGA | 2 cut(s) | 323, 470 |
| Hpy166II | GTNNAC | 2 cut(s) | 203, 302 |
| Hpy188I | TCNGA | 2 cut(s) | 69, 514 |
| Hpy188III | TCNNGA | 3 cut(s) | 149, 272, 443 |
| Hpy8I | GTNNAC | 2 cut(s) | 203, 302 |
| Hpy99I | CGWCG | 2 cut(s) | 66, 601 |
| HpyAV | CCTTC | 4 cut(s) | 106, 442, 467, 755 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 335 |
| HpyCH4IV | ACGT | 5 cut(s) | 61, 234, 304, 349, 615 |
| HpyCH4V | TGCA | 6 cut(s) | 52, 484, 500, 703, 798, 823 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 53, 700, 782, 804, 820 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 393, 441 |
| HpySE526I | ACGT | 5 cut(s) | 61, 234, 304, 349, 615 |
| Hsp92I | GRCGYC | 2 cut(s) | 615, 718 |
| Hsp92II | CATG | 3 cut(s) | 136, 609, 659 |
| HspAI | GCGC | 2 cut(s) | 718, 812 |
| KasI | GGCGCC | 1 cut(s) | 717 |
| KroI | GCCGGC | 1 cut(s) | 85 |
| KroNI | GCCGGC | 1 cut(s) | 87 |
| Ksp22I | TGATCA | 1 cut(s) | 637 |
| Kzo9I | GATC | 4 cut(s) | 245, 268, 637, 661 |
| LguI | GCTCTTC | 1 cut(s) | 494 |
| LmnI | GCTCC | 1 cut(s) | 539 |
| Lsp1109I | GCAGC | 4 cut(s) | 384, 496, 638, 703 |
| LweI | GCATC | 4 cut(s) | 471, 487, 558, 799 |
| MabI | ACCWGGT | 1 cut(s) | 359 |
| MaeI | CTAG | 2 cut(s) | 272, 714 |
| MaeII | ACGT | 5 cut(s) | 61, 234, 304, 349, 615 |
| MaeIII | GTNAC | 2 cut(s) | 329, 743 |
| MalI | GATC | 4 cut(s) | 247, 270, 639, 663 |
| MboI | GATC | 4 cut(s) | 245, 268, 637, 661 |
| MboII | GAAGA | 3 cut(s) | 134, 481, 735 |
| MhlI | GDGCHC | 1 cut(s) | 544 |
| MluCI | AATT | 3 cut(s) | 19, 515, 672 |
| Mly113I | GGCGCC | 1 cut(s) | 718 |
| MlyI | GAGTC | 2 cut(s) | 745, 751 |
| MmeI | TCCRAC | 2 cut(s) | 287, 591 |
| MnlI | CCTC | 6 cut(s) | 231, 249, 379, 445, 459, 581 |
| MroNI | GCCGGC | 1 cut(s) | 85 |
| MseI | TTAA | 1 cut(s) | 33 |
| MspA1I | CMGCKG | 1 cut(s) | 397 |
| MspI | CCGG | 6 cut(s) | 86, 189, 297, 563, 577, 623 |
| MspR9I | CCNGG | 4 cut(s) | 190, 361, 553, 631 |
| MvaI | CCWGG | 3 cut(s) | 361, 553, 631 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 53, 700, 782, 804, 820 |
| NaeI | GCCGGC | 1 cut(s) | 87 |
| NarI | GGCGCC | 1 cut(s) | 718 |
| NciI | CCSGG | 1 cut(s) | 190 |
| NdeII | GATC | 4 cut(s) | 245, 268, 637, 661 |
| NgoMIV | GCCGGC | 1 cut(s) | 85 |
| NlaIII | CATG | 3 cut(s) | 136, 609, 659 |
| NlaIV | GGNNCC | 3 cut(s) | 260, 295, 719 |
| NmeAIII | GCCGAG | 1 cut(s) | 164 |
| NmuCI | GTSAC | 2 cut(s) | 329, 743 |
| PciSI | GCTCTTC | 1 cut(s) | 494 |
| PdiI | GCCGGC | 1 cut(s) | 87 |
| PfeI | GAWTC | 4 cut(s) | 41, 70, 389, 531 |
| PkrI | GCNGC | 4 cut(s) | 399, 486, 628, 693 |
| Ple19I | CGATCG | 1 cut(s) | 248 |
| PleI | GAGTC | 2 cut(s) | 745, 750 |
| PluTI | GGCGCC | 1 cut(s) | 721 |
| PpsI | GAGTC | 2 cut(s) | 745, 750 |
| PshBI | ATTAAT | 1 cut(s) | 33 |
| Psp6I | CCWGG | 3 cut(s) | 359, 551, 629 |
| PspEI | GGTNACC | 1 cut(s) | 329 |
| PspGI | CCWGG | 3 cut(s) | 359, 551, 629 |
| PspN4I | GGNNCC | 3 cut(s) | 260, 295, 719 |
| PspPI | GGNCC | 2 cut(s) | 294, 560 |
| PstNI | CAGNNNCTG | 1 cut(s) | 804 |
| PvuI | CGATCG | 1 cut(s) | 248 |
| PvuII | CAGCTG | 1 cut(s) | 397 |
| RsaI | GTAC | 2 cut(s) | 358, 803 |
| RsaNI | GTAC | 2 cut(s) | 357, 802 |
| SapI | GCTCTTC | 1 cut(s) | 494 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| SatI | GCNGC | 4 cut(s) | 398, 485, 627, 692 |
| Sau3AI | GATC | 4 cut(s) | 245, 268, 637, 661 |
| Sau96I | GGNCC | 2 cut(s) | 294, 560 |
| SchI | GAGTC | 2 cut(s) | 745, 751 |
| ScrFI | CCNGG | 4 cut(s) | 190, 361, 553, 631 |
| SduI | GDGCHC | 1 cut(s) | 544 |
| SexAI | ACCWGGT | 1 cut(s) | 359 |
| SfaNI | GCATC | 4 cut(s) | 471, 487, 558, 799 |
| SfoI | GGCGCC | 1 cut(s) | 719 |
| SinI | GGWCC | 2 cut(s) | 294, 560 |
| Sse9I | AATT | 3 cut(s) | 19, 515, 672 |
| SsiI | CCGC | 1 cut(s) | 45 |
| SspDI | GGCGCC | 1 cut(s) | 717 |
| SspMI | CTAG | 2 cut(s) | 272, 714 |
| StyD4I | CCNGG | 4 cut(s) | 188, 359, 551, 629 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 2 cut(s) | 170, 335 |
| TaiI | ACGT | 5 cut(s) | 64, 237, 307, 352, 618 |
| TaqI | TCGA | 4 cut(s) | 244, 248, 254, 522 |
| TasI | AATT | 3 cut(s) | 19, 515, 672 |
| TfiI | GAWTC | 4 cut(s) | 41, 70, 389, 531 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TscAI | CASTG | 3 cut(s) | 54, 705, 752 |
| TseFI | GTSAC | 2 cut(s) | 329, 743 |
| TseI | GCWGC | 4 cut(s) | 397, 484, 626, 691 |
| Tsp45I | GTSAC | 2 cut(s) | 329, 743 |
| TspDTI | ATGAA | 3 cut(s) | 62, 149, 774 |
| TspGWI | ACGGA | 1 cut(s) | 296 |
| TspRI | CASTG | 3 cut(s) | 54, 705, 752 |
| VpaK11BI | GGWCC | 2 cut(s) | 294, 560 |
| VspI | ATTAAT | 1 cut(s) | 33 |
| XbaI | TCTAGA | 1 cut(s) | 271 |
| XspI | CTAG | 2 cut(s) | 272, 714 |
| ZraI | GACGTC | 1 cut(s) | 616 |