Rorug05G0515800

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
70053038 .. 70055829
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0515800.1

Sequence Viewer

Length: 1449 bp
ATGCCACCGAATCTCTCCCTCCTCATTTTCCTCTTGGCCACAATGGCTTACAGGTCCCTAGCCGTTGGCGTGAATTGGGGCACGACGGCCTCCCACCCATTGCCGCCGGCCAAGGTCGTCGAGCTCTTGAAATCAAACAACATTACCAGAGTGAAGCTGTTGGACGCAGACCCACTTGTTCTTGAAGCGCTTTCTGGGTCCAATCTGGGCGTCACTGTTGGGATTCCTAATGGGTTGCTTAGAAGCTTGAACTCGTCCAAGAAGGCTGCACAGAGTTGGGTCCATGACAATGTCACTCGCTATGTTTCTAGTGGTGACAGCCGCGTCAAAATCGAGTATGTTGCTGTGGGAGATGAACCATTTCTCCAGAGTTATGGTGAGCAATTTCACCCCTTTGTGCTTGGAGCAGCAATCAATATCCAAACAGCTTTGACCCAAGCAAACTTGGACAGCAAGGTGAAAGTAGTGGTTCCCTGCAGTTTTGATTCCTATTTGTCAGAGACTAGCCTTCCTTCAAAAGGACATTTCCGAGCCGATGTCAACAGGACCATGATTCAACTGCTGACGTTTCTCAGCAAGCACAACTCACCATTTTTTGCAACCATTTCCCCGTTCCTAGCTTTCCAACAGAACAAGAACATTTCCCTTGACTTTACTCTCTTCAAAATATACACCAAAGCTCATAACGACAGTCGTAGAATGTACAAAAACAGCTTTGACTTGAACTATGACATCTTGGTTAATGCATTGTCAACAGTAGGGTTTCCTAAGATTGAAATTGTTGTGTCACAGATTGGTTGGCCTACAGATGGAGGACCAAATGCTACTTCATATGCTGCAGAGACCTTCATGAAAGGCCTGATGAACCGCCTTCGTAGCAAATTGGGGACCCCACTTAGACCTCGAGATCCTCCAGTTGAAACATACATTTTTAGCCTCTTAGATGAAGATCAAAGAAGCATAAGCACTGGAAATTTTGAGAGACATTGGGGCATTTTCACTTTTGATGGTCAAGCCAAGTACCGTTTTGATTTTACCCAAGGTTCAAACAGCCTTGTGAATGCACAGAATGTTGAGTACCTTCCTTCCAAGTGGTGTGTGGTGAACAATAACAGGGACTTATCTAACGCAACTGCGAGTGCATTAAATGCATGTTCCCTTGCTGATTGTAGTGCACTGTCTCCTGGTGGATCTTGTTCCAACATCAGTTGGCCTGGGAATATCTCGTATGCGTTTAATAGCTACTATCAGCGGCGTAATCAGAGTGCAGACAGCTGCGACTTTGGTGGCCTTGGTTTGATCACAACTGTTAATCCGTCAGTGGATAACTGCAGGTTTTTGGTTCAACTGAACACTTCCCTTTCAGATACTCTTCATCCGGCCTCTGTTTCCCAGTGGATTACCTTGCTAGTGACAGCCATTTTATTACTTTTACCACGATTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

53.03

Weight (kDa)

8.56

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 22 - 345 3.1e-64 Glycosyl hydrolases family 17
X8 PF07983 364 - 432 4.2e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 1323
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 104, 322, 868, 1252
AclWI GGATC 2 cut(s) 902, 1198
AcoI YGGCCR 2 cut(s) 36, 108
AcsI RAATTY 1 cut(s) 973
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 704, 1022, 1079
AfeI AGCGCT 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 518, 809
AjnI CCWGG 2 cut(s) 1183, 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 811, 843
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 9 cut(s) 124, 157, 246, 428, 620, 680, 714, 1242, 1275
AluI AGCT 9 cut(s) 124, 157, 246, 428, 620, 680, 714, 1242, 1275
Alw21I GWGCWC 2 cut(s) 126, 1177
Alw26I GTCTC 4 cut(s) 494, 836, 976, 1185
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 2 cut(s) 902, 1198
Ama87I CYCGRG 1 cut(s) 903
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 8 cut(s) 36, 87, 108, 800, 856, 1211, 1288, 1380
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 4 cut(s) 266, 407, 836, 1275
ApoI RAATTY 1 cut(s) 973
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 6 cut(s) 54, 198, 280, 546, 815, 888
AsuHPI GGTGA 6 cut(s) 326, 380, 389, 469, 579, 1114
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 6 cut(s) 54, 198, 280, 546, 815, 888
BaeGI GKGCMC 2 cut(s) 83, 1177
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 126, 1177
BbvI GCAGC 4 cut(s) 253, 419, 823, 1262
BccI CCATC 2 cut(s) 803, 1001
BceAI ACGGC 2 cut(s) 47, 102
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 2 cut(s) 1185, 1215
BclI TGATCA 1 cut(s) 1299
BcoDI GTCTC 4 cut(s) 494, 836, 976, 1185
BfaI CTAG 6 cut(s) 59, 309, 504, 617, 1409, 1447
BfmI CTRYAG 4 cut(s) 475, 804, 837, 1330
BfoI RGCGCY 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 1323
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 7 cut(s) 104, 267, 322, 408, 837, 1253, 1276
BlsI GCNGC 7 cut(s) 105, 268, 323, 409, 838, 1254, 1277
Bme1390I CCNGG 2 cut(s) 1185, 1215
Bme18I GGWCC 6 cut(s) 54, 198, 280, 546, 815, 888
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 6 cut(s) 54, 198, 280, 546, 815, 888
BmiI GGNNCC 6 cut(s) 56, 199, 281, 471, 889, 890
BmrFI CCNGG 2 cut(s) 1185, 1215
BmrI ACTGGG 1 cut(s) 1387
BmuI ACTGGG 1 cut(s) 1387
BpmI CTGGAG 2 cut(s) 350, 897
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 4 cut(s) 111, 1039, 1214, 1291
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 809
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 3 cut(s) 914, 973, 1393
Bse3DI GCAATG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 2 cut(s) 1185, 1215
BseDI CCNNGG 4 cut(s) 111, 1039, 1214, 1291
BseGI GGATG 1 cut(s) 1375
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 2 cut(s) 518, 809
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 586
BseNI ACTGG 3 cut(s) 914, 973, 1393
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 2 cut(s) 83, 1177
BseXI GCAGC 4 cut(s) 253, 419, 823, 1262
BsgI GTGCAG 2 cut(s) 252, 1287
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 8 cut(s) 38, 89, 110, 802, 858, 1213, 1290, 1382
BsiHKAI GWGCWC 2 cut(s) 126, 1177
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 2 cut(s) 107, 1379
BslFI GGGAC 3 cut(s) 40, 901, 1130
BslI CCNNNNNNNGG 2 cut(s) 518, 809
BsmAI GTCTC 4 cut(s) 494, 836, 976, 1185
BsmFI GGGAC 3 cut(s) 40, 901, 1130
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 8 cut(s) 38, 89, 110, 802, 858, 1213, 1290, 1382
Bso31I GGTCTC 1 cut(s) 836
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 3 cut(s) 83, 126, 1177
Bsp1407I TGTACA 1 cut(s) 702
Bsp143I GATC 4 cut(s) 907, 949, 1190, 1299
BspACI CCGC 4 cut(s) 104, 322, 868, 1252
BspANI GGCC 8 cut(s) 38, 89, 110, 802, 858, 1213, 1290, 1382
BspCNI CTCAG 1 cut(s) 585
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 6 cut(s) 56, 199, 281, 471, 889, 890
BspMAI CTGCAG 3 cut(s) 479, 841, 1334
BspMI ACCTGC 1 cut(s) 1323
BspPI GGATC 2 cut(s) 902, 1198
BspTNI GGTCTC 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 106
BsrGI TGTACA 1 cut(s) 702
BsrI ACTGG 3 cut(s) 914, 973, 1393
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 4 cut(s) 111, 1039, 1214, 1291
BssMI GATC 4 cut(s) 907, 949, 1190, 1299
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 111, 1039, 1291
Bst2UI CCWGG 2 cut(s) 1185, 1215
Bst4CI ACNGT 6 cut(s) 217, 692, 757, 1025, 1179, 1309
Bst6I CTCTTC 2 cut(s) 665, 1377
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstAUI TGTACA 1 cut(s) 702
BstC8I GCNNGC 2 cut(s) 108, 578
BstDEI CTNAG 5 cut(s) 239, 572, 768, 896, 940
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 1375
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 4 cut(s) 910, 952, 1193, 1302
BstMAI GTCTC 4 cut(s) 494, 836, 976, 1185
BstMBI GATC 4 cut(s) 907, 949, 1190, 1299
BstMWI GCNNNNNNNGC 3 cut(s) 44, 876, 1148
BstNI CCWGG 2 cut(s) 1185, 1215
BstNSI RCATGY 1 cut(s) 1155
BstSCI CCNGG 2 cut(s) 1183, 1213
BstSFI CTRYAG 4 cut(s) 475, 804, 837, 1330
BstSLI GKGCMC 2 cut(s) 83, 1177
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 253, 419, 823, 1262
BstX2I RGATCY 2 cut(s) 907, 1190
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 2 cut(s) 907, 1190
BsuRI GGCC 8 cut(s) 38, 89, 110, 802, 858, 1213, 1290, 1382
BtsCI GGATG 1 cut(s) 1375
BtsIMutI CAGTG 5 cut(s) 213, 966, 1175, 1326, 1400
BveI ACCTGC 1 cut(s) 1323
Cac8I GCNNGC 2 cut(s) 108, 578
CciI TCATGA 1 cut(s) 849
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 6 cut(s) 54, 198, 280, 546, 815, 888
CseI GACGC 3 cut(s) 173, 199, 313
Csp6I GTAC 3 cut(s) 703, 1021, 1078
CviAII CATG 4 cut(s) 284, 550, 850, 1152
CviQI GTAC 3 cut(s) 703, 1021, 1078
DdeI CTNAG 5 cut(s) 239, 572, 768, 896, 940
DpnI GATC 4 cut(s) 909, 951, 1192, 1301
DpnII GATC 4 cut(s) 907, 949, 1190, 1299
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 2 cut(s) 36, 108
Eam1104I CTCTTC 2 cut(s) 665, 1377
EarI CTCTTC 2 cut(s) 665, 1377
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 111, 1039, 1291
Eco147I AGGCCT 1 cut(s) 858
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 836
Eco47I GGWCC 6 cut(s) 54, 198, 280, 546, 815, 888
Eco47III AGCGCT 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoO109I RGGNCCY 2 cut(s) 54, 888
EcoRII CCWGG 2 cut(s) 1183, 1213
EcoT14I CCWWGG 3 cut(s) 111, 1039, 1291
EcoT22I ATGCAT 2 cut(s) 748, 1153
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 3 cut(s) 111, 1039, 1291
FaeI CATG 4 cut(s) 287, 553, 853, 1155
FaqI GGGAC 3 cut(s) 40, 901, 1130
FatI CATG 4 cut(s) 283, 549, 849, 1151
FauNDI CATATG 1 cut(s) 832
FbaI TGATCA 1 cut(s) 1299
Fnu4HI GCNGC 7 cut(s) 104, 267, 322, 408, 837, 1253, 1276
FokI GGATG 1 cut(s) 1362
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 7 cut(s) 104, 267, 322, 408, 837, 1253, 1276
FspBI CTAG 6 cut(s) 59, 309, 504, 617, 1409, 1447
GlaI GCGC 1 cut(s) 189
GluI GCNGC 7 cut(s) 104, 267, 322, 408, 837, 1253, 1276
GsuI CTGGAG 2 cut(s) 350, 897
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 8 cut(s) 38, 89, 110, 802, 858, 1213, 1290, 1382
HapII CCGG 2 cut(s) 107, 1379
HgaI GACGC 3 cut(s) 173, 199, 313
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 287, 553, 853, 1155
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 2 cut(s) 541, 753
HindII GTYRAC 2 cut(s) 541, 753
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 4 cut(s) 10, 223, 485, 553
HpaII CCGG 2 cut(s) 107, 1379
HphI GGTGA 6 cut(s) 326, 380, 389, 469, 579, 1114
Hpy166II GTNNAC 4 cut(s) 541, 753, 1105, 1175
Hpy188I TCNGA 4 cut(s) 499, 530, 1263, 1366
Hpy188III TCNNGA 5 cut(s) 127, 182, 367, 850, 905
Hpy8I GTNNAC 4 cut(s) 541, 753, 1105, 1175
Hpy99I CGWCG 2 cut(s) 88, 122
HpyAV CCTTC 7 cut(s) 256, 518, 522, 856, 881, 1091, 1095
HpyCH4III ACNGT 6 cut(s) 217, 692, 757, 1025, 1179, 1309
HpyCH4IV ACGT 1 cut(s) 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 876, 1148
HpyF3I CTNAG 5 cut(s) 239, 572, 768, 896, 940
HpySE526I ACGT 1 cut(s) 566
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 287, 553, 853, 1155
HspAI GCGC 1 cut(s) 188
KflI GGGWCCC 1 cut(s) 888
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 1299
Kzo9I GATC 4 cut(s) 907, 949, 1190, 1299
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 4 cut(s) 253, 419, 823, 1262
MaeI CTAG 6 cut(s) 59, 309, 504, 617, 1409, 1447
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 5 cut(s) 211, 292, 314, 786, 1411
MalI GATC 4 cut(s) 909, 951, 1192, 1301
MboI GATC 4 cut(s) 907, 949, 1190, 1299
MboII GAAGA 3 cut(s) 652, 959, 1364
MflI RGATCY 2 cut(s) 907, 1190
MhlI GDGCHC 3 cut(s) 83, 126, 1177
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 5 cut(s) 73, 383, 777, 881, 973
MluNI TGGCCA 1 cut(s) 38
MmeI TCCRAC 3 cut(s) 141, 649, 1224
MnlI CCTC 9 cut(s) 29, 32, 41, 100, 806, 912, 921, 947, 1393
Mox20I TGGCCA 1 cut(s) 38
Mph1103I ATGCAT 2 cut(s) 748, 1153
MroNI GCCGGC 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 38
MseI TTAA 4 cut(s) 741, 1145, 1236, 1311
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 2 cut(s) 1252, 1275
MspI CCGG 2 cut(s) 107, 1379
MspR9I CCNGG 2 cut(s) 1185, 1215
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 2 cut(s) 1185, 1215
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 44, 876, 1148
NaeI GCCGGC 1 cut(s) 108
NdeI CATATG 1 cut(s) 832
NdeII GATC 4 cut(s) 907, 949, 1190, 1299
NgoMIV GCCGGC 1 cut(s) 106
NlaIII CATG 4 cut(s) 287, 553, 853, 1155
NlaIV GGNNCC 6 cut(s) 56, 199, 281, 471, 889, 890
NmuCI GTSAC 5 cut(s) 211, 292, 314, 786, 1411
NsiI ATGCAT 2 cut(s) 748, 1153
NspI RCATGY 1 cut(s) 1155
PaeR7I CTCGAG 1 cut(s) 903
PagI TCATGA 1 cut(s) 849
PceI AGGCCT 1 cut(s) 858
PctI GAATGC 1 cut(s) 1066
PdiI GCCGGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 4 cut(s) 10, 223, 485, 553
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 7 cut(s) 105, 268, 323, 409, 838, 1254, 1277
PpuMI RGGWCCY 2 cut(s) 54, 888
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 2 cut(s) 54, 888
Psp6I CCWGG 2 cut(s) 1183, 1213
PspGI CCWGG 2 cut(s) 1183, 1213
PspN4I GGNNCC 6 cut(s) 56, 199, 281, 471, 889, 890
PspPI GGNCC 6 cut(s) 54, 198, 280, 546, 815, 888
PspPPI RGGWCCY 2 cut(s) 54, 888
PstI CTGCAG 3 cut(s) 479, 841, 1334
PsuI RGATCY 2 cut(s) 907, 1190
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 1275
RsaI GTAC 3 cut(s) 704, 1022, 1079
RsaNI GTAC 3 cut(s) 703, 1021, 1078
RseI CAYNNNNRTG 1 cut(s) 288
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 741, 1145, 1236, 1311
SatI GCNGC 7 cut(s) 104, 267, 322, 408, 837, 1253, 1276
Sau3AI GATC 4 cut(s) 907, 949, 1190, 1299
Sau96I GGNCC 6 cut(s) 54, 198, 280, 546, 815, 888
ScrFI CCNGG 2 cut(s) 1185, 1215
SduI GDGCHC 3 cut(s) 83, 126, 1177
SfcI CTRYAG 4 cut(s) 475, 804, 837, 1330
Sfr274I CTCGAG 1 cut(s) 903
SinI GGWCC 6 cut(s) 54, 198, 280, 546, 815, 888
SlaI CTCGAG 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 903
SmoI CTYRAG 1 cut(s) 903
Sse9I AATT 5 cut(s) 73, 383, 777, 881, 973
SseBI AGGCCT 1 cut(s) 858
SsiI CCGC 4 cut(s) 104, 322, 868, 1252
SspMI CTAG 6 cut(s) 59, 309, 504, 617, 1409, 1447
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 858
StyD4I CCNGG 2 cut(s) 1183, 1213
StyI CCWWGG 3 cut(s) 111, 1039, 1291
TaaI ACNGT 6 cut(s) 217, 692, 757, 1025, 1179, 1309
TaiI ACGT 1 cut(s) 569
TaqI TCGA 3 cut(s) 120, 333, 904
TasI AATT 5 cut(s) 73, 383, 777, 881, 973
TatI WGTACW 1 cut(s) 702
TauI GCSGC 3 cut(s) 106, 324, 1255
TfiI GAWTC 4 cut(s) 10, 223, 485, 553
Tru1I TTAA 4 cut(s) 741, 1145, 1236, 1311
Tru9I TTAA 4 cut(s) 741, 1145, 1236, 1311
TscAI CASTG 5 cut(s) 220, 973, 1182, 1326, 1400
TseFI GTSAC 5 cut(s) 211, 292, 314, 786, 1411
TseI GCWGC 4 cut(s) 266, 407, 836, 1275
Tsp45I GTSAC 5 cut(s) 211, 292, 314, 786, 1411
TspDTI ATGAA 7 cut(s) 369, 819, 838, 866, 878, 960, 1364
TspGWI ACGGA 1 cut(s) 1305
TspRI CASTG 5 cut(s) 220, 973, 1182, 1326, 1400
Tth111I GACNNNGTC 1 cut(s) 290
VneI GTGCAC 1 cut(s) 1173
VpaK11BI GGWCC 6 cut(s) 54, 198, 280, 546, 815, 888
XagI CCTNNNNNAGG 1 cut(s) 516
XapI RAATTY 1 cut(s) 973
XceI RCATGY 1 cut(s) 1155
XcmI CCANNNNNNNNNTGG 1 cut(s) 1096
XhoI CTCGAG 1 cut(s) 903
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 6 cut(s) 59, 309, 504, 617, 1409, 1447
Zsp2I ATGCAT 2 cut(s) 748, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.