ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 198 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 524 |
| AccI | GTMKAC | 1 cut(s) | 331 |
| AccII | CGCG | 2 cut(s) | 20, 554 |
| AclWI | GGATC | 1 cut(s) | 415 |
| AcsI | RAATTY | 3 cut(s) | 297, 508, 779 |
| AcuI | CTGAAG | 1 cut(s) | 677 |
| AfaI | GTAC | 1 cut(s) | 147 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 270, 426, 524 |
| AflIII | ACRYGT | 1 cut(s) | 719 |
| AgsI | TTSAA | 5 cut(s) | 292, 507, 514, 611, 779 |
| AjnI | CCWGG | 1 cut(s) | 419 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 675, 707 |
| AluBI | AGCT | 1 cut(s) | 497 |
| AluI | AGCT | 1 cut(s) | 497 |
| Alw21I | GWGCWC | 1 cut(s) | 51 |
| Alw26I | GTCTC | 2 cut(s) | 237, 600 |
| AlwI | GGATC | 1 cut(s) | 415 |
| AoxI | GGCC | 1 cut(s) | 633 |
| ApeKI | GCWGC | 1 cut(s) | 494 |
| ApoI | RAATTY | 3 cut(s) | 297, 508, 779 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 783 |
| AspLEI | GCGC | 2 cut(s) | 370, 554 |
| AsuC2I | CCSGG | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 3 cut(s) | 167, 212, 409 |
| BaeGI | GKGCMC | 1 cut(s) | 201 |
| BanI | GGYRCC | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 506 |
| BccI | CCATC | 3 cut(s) | 86, 135, 152 |
| BciT130I | CCWGG | 1 cut(s) | 421 |
| BciVI | GTATCC | 1 cut(s) | 709 |
| BclI | TGATCA | 1 cut(s) | 648 |
| BcnI | CCSGG | 1 cut(s) | 56 |
| BcoDI | GTCTC | 2 cut(s) | 237, 600 |
| BfaI | CTAG | 1 cut(s) | 498 |
| BfuI | GTATCC | 1 cut(s) | 709 |
| BisI | GCNGC | 1 cut(s) | 495 |
| BlpI | GCTNAGC | 1 cut(s) | 50 |
| BlsI | GCNGC | 1 cut(s) | 496 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 421 |
| BmiI | GGNNCC | 2 cut(s) | 200, 680 |
| BmrFI | CCNGG | 2 cut(s) | 56, 421 |
| BmsI | GCATC | 2 cut(s) | 105, 355 |
| BpmI | CTGGAG | 1 cut(s) | 442 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 50 |
| BpuEI | CTTGAG | 1 cut(s) | 31 |
| BpuMI | CCSGG | 1 cut(s) | 56 |
| Bsa29I | ATCGAT | 2 cut(s) | 135, 390 |
| BsaI | GGTCTC | 2 cut(s) | 237, 600 |
| BsaJI | CCNNGG | 2 cut(s) | 55, 269 |
| BsaWI | WCCGGW | 3 cut(s) | 65, 111, 222 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 328, 358, 415, 445 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 270, 426, 524 |
| Bse1I | ACTGG | 1 cut(s) | 190 |
| BseBI | CCWGG | 1 cut(s) | 421 |
| BseCI | ATCGAT | 2 cut(s) | 135, 390 |
| BseDI | CCNNGG | 2 cut(s) | 55, 269 |
| BseGI | GGATG | 1 cut(s) | 370 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 270, 426, 524 |
| BseMII | CTCAG | 3 cut(s) | 64, 253, 303 |
| BseNI | ACTGG | 1 cut(s) | 190 |
| BseRI | GAGGAG | 3 cut(s) | 227, 555, 558 |
| BseSI | GKGCMC | 1 cut(s) | 201 |
| BseXI | GCAGC | 1 cut(s) | 506 |
| Bsh1236I | CGCG | 2 cut(s) | 20, 554 |
| Bsh1285I | CGRYCG | 2 cut(s) | 24, 116 |
| BshFI | GGCC | 1 cut(s) | 635 |
| BshNI | GGYRCC | 1 cut(s) | 198 |
| BshVI | ATCGAT | 2 cut(s) | 135, 390 |
| BsiEI | CGRYCG | 2 cut(s) | 24, 116 |
| BsiHKAI | GWGCWC | 1 cut(s) | 51 |
| BsiSI | CCGG | 5 cut(s) | 55, 66, 112, 223, 589 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 270, 426, 524 |
| BsmAI | GTCTC | 2 cut(s) | 237, 600 |
| BsnI | GGCC | 1 cut(s) | 635 |
| Bso31I | GGTCTC | 2 cut(s) | 237, 600 |
| Bsp1286I | GDGCHC | 2 cut(s) | 51, 201 |
| Bsp143I | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 50 |
| Bsp19I | CCATGG | 1 cut(s) | 269 |
| Bsp68I | TCGCGA | 1 cut(s) | 20 |
| BspANI | GGCC | 1 cut(s) | 635 |
| BspCNI | CTCAG | 3 cut(s) | 63, 252, 304 |
| BspDI | ATCGAT | 2 cut(s) | 135, 390 |
| BspFNI | CGCG | 2 cut(s) | 20, 554 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspLI | GGNNCC | 2 cut(s) | 200, 680 |
| BspPI | GGATC | 1 cut(s) | 415 |
| BspT107I | GGYRCC | 1 cut(s) | 198 |
| BspTNI | GGTCTC | 2 cut(s) | 237, 600 |
| BsrI | ACTGG | 1 cut(s) | 190 |
| BssECI | CCNNGG | 2 cut(s) | 55, 269 |
| BssMI | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| BssNAI | GTATAC | 1 cut(s) | 332 |
| BssT1I | CCWWGG | 1 cut(s) | 269 |
| Bst1107I | GTATAC | 1 cut(s) | 332 |
| Bst2UI | CCWGG | 1 cut(s) | 421 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 357 |
| Bst6I | CTCTTC | 1 cut(s) | 576 |
| BstC8I | GCNNGC | 2 cut(s) | 254, 637 |
| BstDEI | CTNAG | 3 cut(s) | 50, 239, 312 |
| BstDSI | CCRYGG | 1 cut(s) | 269 |
| BstF5I | GGATG | 1 cut(s) | 370 |
| BstFNI | CGCG | 2 cut(s) | 20, 554 |
| BstHHI | GCGC | 2 cut(s) | 370, 554 |
| BstKTI | GATC | 6 cut(s) | 24, 390, 410, 532, 651, 676 |
| BstMAI | GTCTC | 2 cut(s) | 237, 600 |
| BstMBI | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| BstMCI | CGRYCG | 2 cut(s) | 24, 116 |
| BstNI | CCWGG | 1 cut(s) | 421 |
| BstSCI | CCNGG | 2 cut(s) | 54, 419 |
| BstSLI | GKGCMC | 1 cut(s) | 201 |
| BstUI | CGCG | 2 cut(s) | 20, 554 |
| BstV1I | GCAGC | 1 cut(s) | 506 |
| BstZ17I | GTATAC | 1 cut(s) | 332 |
| Bsu15I | ATCGAT | 2 cut(s) | 135, 390 |
| BsuI | GTATCC | 1 cut(s) | 709 |
| BsuRI | GGCC | 1 cut(s) | 635 |
| BsuTUI | ATCGAT | 2 cut(s) | 135, 390 |
| BtgI | CCRYGG | 1 cut(s) | 269 |
| BtsCI | GGATG | 1 cut(s) | 370 |
| BtsI | GCAGTG | 1 cut(s) | 51 |
| BtsIMutI | CAGTG | 2 cut(s) | 51, 474 |
| BtuMI | TCGCGA | 1 cut(s) | 20 |
| Cac8I | GCNNGC | 2 cut(s) | 254, 637 |
| CciI | TCATGA | 1 cut(s) | 628 |
| CfoI | GCGC | 2 cut(s) | 370, 554 |
| ClaI | ATCGAT | 2 cut(s) | 135, 390 |
| CseI | GACGC | 1 cut(s) | 614 |
| Csp6I | GTAC | 1 cut(s) | 146 |
| CviAII | CATG | 5 cut(s) | 228, 270, 474, 524, 629 |
| CviJI | RGCY | 9 cut(s) | 54, 77, 162, 181, 399, 448, 497, 635, 749 |
| CviKI_1 | RGCY | 9 cut(s) | 54, 77, 162, 181, 399, 448, 497, 635, 749 |
| CviQI | GTAC | 1 cut(s) | 146 |
| DdeI | CTNAG | 3 cut(s) | 50, 239, 312 |
| DpnI | GATC | 6 cut(s) | 23, 389, 409, 531, 650, 675 |
| DpnII | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| Eam1104I | CTCTTC | 1 cut(s) | 576 |
| EarI | CTCTTC | 1 cut(s) | 576 |
| Eco130I | CCWWGG | 1 cut(s) | 269 |
| Eco147I | AGGCCT | 1 cut(s) | 635 |
| Eco31I | GGTCTC | 2 cut(s) | 237, 600 |
| Eco57I | CTGAAG | 1 cut(s) | 677 |
| EcoRI | GAATTC | 1 cut(s) | 779 |
| EcoRII | CCWGG | 1 cut(s) | 419 |
| EcoT14I | CCWWGG | 1 cut(s) | 269 |
| EcoT22I | ATGCAT | 1 cut(s) | 717 |
| ErhI | CCWWGG | 1 cut(s) | 269 |
| FaeI | CATG | 5 cut(s) | 231, 273, 477, 527, 632 |
| FatI | CATG | 5 cut(s) | 227, 269, 473, 523, 628 |
| FbaI | TGATCA | 1 cut(s) | 648 |
| FblI | GTMKAC | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 1 cut(s) | 495 |
| FokI | GGATG | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 1 cut(s) | 495 |
| FspBI | CTAG | 1 cut(s) | 498 |
| GlaI | GCGC | 2 cut(s) | 369, 553 |
| GluI | GCNGC | 1 cut(s) | 495 |
| GsuI | CTGGAG | 1 cut(s) | 442 |
| HaeIII | GGCC | 1 cut(s) | 635 |
| HapII | CCGG | 5 cut(s) | 55, 66, 112, 223, 589 |
| HgaI | GACGC | 1 cut(s) | 614 |
| HhaI | GCGC | 2 cut(s) | 370, 554 |
| Hin1II | CATG | 5 cut(s) | 231, 273, 477, 527, 632 |
| Hin6I | GCGC | 2 cut(s) | 368, 552 |
| HinP1I | GCGC | 2 cut(s) | 368, 552 |
| HincII | GTYRAC | 1 cut(s) | 584 |
| HindII | GTYRAC | 1 cut(s) | 584 |
| HinfI | GANTC | 2 cut(s) | 15, 424 |
| HpaII | CCGG | 5 cut(s) | 55, 66, 112, 223, 589 |
| HphI | GGTGA | 3 cut(s) | 167, 212, 409 |
| Hpy166II | GTNNAC | 2 cut(s) | 332, 584 |
| Hpy188I | TCNGA | 4 cut(s) | 214, 242, 313, 678 |
| Hpy188III | TCNNGA | 2 cut(s) | 19, 629 |
| Hpy8I | GTNNAC | 2 cut(s) | 332, 584 |
| Hpy99I | CGWCG | 1 cut(s) | 104 |
| HpyAV | CCTTC | 2 cut(s) | 310, 314 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 357 |
| HpyCH4IV | ACGT | 5 cut(s) | 102, 217, 534, 721, 760 |
| HpyCH4V | TGCA | 2 cut(s) | 352, 715 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 239, 312 |
| HpySE526I | ACGT | 5 cut(s) | 102, 217, 534, 721, 760 |
| Hsp92II | CATG | 5 cut(s) | 231, 273, 477, 527, 632 |
| HspAI | GCGC | 2 cut(s) | 368, 552 |
| Ksp22I | TGATCA | 1 cut(s) | 648 |
| Kzo9I | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| LmnI | GCTCC | 1 cut(s) | 240 |
| Lsp1109I | GCAGC | 1 cut(s) | 506 |
| LweI | GCATC | 2 cut(s) | 105, 355 |
| MaeI | CTAG | 1 cut(s) | 498 |
| MaeII | ACGT | 5 cut(s) | 102, 217, 534, 721, 760 |
| MaeIII | GTNAC | 2 cut(s) | 218, 380 |
| MalI | GATC | 6 cut(s) | 23, 389, 409, 531, 650, 675 |
| MboI | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| MboII | GAAGA | 3 cut(s) | 300, 536, 563 |
| MfeI | CAATTG | 1 cut(s) | 34 |
| MhlI | GDGCHC | 2 cut(s) | 51, 201 |
| MluCI | AATT | 5 cut(s) | 34, 297, 508, 519, 779 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| Mph1103I | ATGCAT | 1 cut(s) | 717 |
| MroXI | GAANNNNTTC | 1 cut(s) | 783 |
| MseI | TTAA | 1 cut(s) | 732 |
| MslI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| MspI | CCGG | 5 cut(s) | 55, 66, 112, 223, 589 |
| MspR9I | CCNGG | 2 cut(s) | 56, 421 |
| MunI | CAATTG | 1 cut(s) | 34 |
| MvaI | CCWGG | 1 cut(s) | 421 |
| MvnI | CGCG | 2 cut(s) | 20, 554 |
| NciI | CCSGG | 1 cut(s) | 56 |
| NcoI | CCATGG | 1 cut(s) | 269 |
| NdeII | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| NlaIII | CATG | 5 cut(s) | 231, 273, 477, 527, 632 |
| NlaIV | GGNNCC | 2 cut(s) | 200, 680 |
| NmuCI | GTSAC | 2 cut(s) | 218, 380 |
| NruI | TCGCGA | 1 cut(s) | 20 |
| NsiI | ATGCAT | 1 cut(s) | 717 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PceI | AGGCCT | 1 cut(s) | 635 |
| PdmI | GAANNNNTTC | 1 cut(s) | 783 |
| PfeI | GAWTC | 1 cut(s) | 15 |
| PflFI | GACNNNGTC | 1 cut(s) | 229 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 524 |
| PkrI | GCNGC | 1 cut(s) | 496 |
| Ple19I | CGATCG | 1 cut(s) | 24 |
| PleI | GAGTC | 1 cut(s) | 432 |
| PpsI | GAGTC | 1 cut(s) | 432 |
| Psp6I | CCWGG | 1 cut(s) | 419 |
| PspGI | CCWGG | 1 cut(s) | 419 |
| PspN4I | GGNNCC | 2 cut(s) | 200, 680 |
| PsyI | GACNNNGTC | 1 cut(s) | 229 |
| PvuI | CGATCG | 1 cut(s) | 24 |
| RruI | TCGCGA | 1 cut(s) | 20 |
| RsaI | GTAC | 1 cut(s) | 147 |
| RsaNI | GTAC | 1 cut(s) | 146 |
| RseI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| SaqAI | TTAA | 1 cut(s) | 732 |
| SatI | GCNGC | 1 cut(s) | 495 |
| Sau3AI | GATC | 6 cut(s) | 21, 387, 407, 529, 648, 673 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 2 cut(s) | 56, 421 |
| SduI | GDGCHC | 2 cut(s) | 51, 201 |
| SfaNI | GCATC | 2 cut(s) | 105, 355 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 135, 137 |
| SmlI | CTYRAG | 1 cut(s) | 10 |
| SmoI | CTYRAG | 1 cut(s) | 10 |
| Sse9I | AATT | 5 cut(s) | 34, 297, 508, 519, 779 |
| SseBI | AGGCCT | 1 cut(s) | 635 |
| SspI | AATATT | 1 cut(s) | 484 |
| SspMI | CTAG | 1 cut(s) | 498 |
| StuI | AGGCCT | 1 cut(s) | 635 |
| StyD4I | CCNGG | 2 cut(s) | 54, 419 |
| StyI | CCWWGG | 1 cut(s) | 269 |
| TaaI | ACNGT | 2 cut(s) | 277, 357 |
| TaiI | ACGT | 5 cut(s) | 105, 220, 537, 724, 763 |
| TaqI | TCGA | 6 cut(s) | 99, 116, 122, 135, 390, 787 |
| TasI | AATT | 5 cut(s) | 34, 297, 508, 519, 779 |
| TfiI | GAWTC | 1 cut(s) | 15 |
| Tru1I | TTAA | 1 cut(s) | 732 |
| Tru9I | TTAA | 1 cut(s) | 732 |
| TscAI | CASTG | 2 cut(s) | 51, 474 |
| TseFI | GTSAC | 2 cut(s) | 218, 380 |
| TseI | GCWGC | 1 cut(s) | 494 |
| Tsp45I | GTSAC | 2 cut(s) | 218, 380 |
| TspDTI | ATGAA | 2 cut(s) | 309, 512 |
| TspGWI | ACGGA | 2 cut(s) | 349, 593 |
| TspRI | CASTG | 2 cut(s) | 51, 474 |
| Tth111I | GACNNNGTC | 1 cut(s) | 229 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 524 |
| XapI | RAATTY | 3 cut(s) | 297, 508, 779 |
| XmiI | GTMKAC | 1 cut(s) | 331 |
| XmnI | GAANNNNTTC | 1 cut(s) | 783 |
| XspI | CTAG | 1 cut(s) | 498 |
| Zsp2I | ATGCAT | 1 cut(s) | 717 |