Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 487 |
| AciI | CCGC | 1 cut(s) | 487 |
| AclWI | GGATC | 2 cut(s) | 396, 436 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 307, 353 |
| AgsI | TTSAA | 3 cut(s) | 61, 164, 436 |
| AjnI | CCWGG | 2 cut(s) | 304, 317 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 81, 113 |
| AluBI | AGCT | 1 cut(s) | 379 |
| AluI | AGCT | 1 cut(s) | 379 |
| Alw26I | GTCTC | 1 cut(s) | 357 |
| AlwI | GGATC | 2 cut(s) | 396, 436 |
| Ama87I | CYCGRG | 1 cut(s) | 211 |
| AoxI | GGCC | 2 cut(s) | 298, 470 |
| ApeKI | GCWGC | 2 cut(s) | 149, 376 |
| AspLEI | GCGC | 2 cut(s) | 253, 268 |
| AspS9I | GGNCC | 1 cut(s) | 470 |
| AsuHPI | GGTGA | 4 cut(s) | 212, 251, 440, 512 |
| AvaI | CYCGRG | 1 cut(s) | 211 |
| BbvI | GCAGC | 2 cut(s) | 136, 388 |
| BccI | CCATC | 3 cut(s) | 182, 197, 461 |
| BceAI | ACGGC | 2 cut(s) | 285, 298 |
| BciT130I | CCWGG | 2 cut(s) | 306, 319 |
| BcoDI | GTCTC | 1 cut(s) | 357 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 319 |
| BisI | GCNGC | 3 cut(s) | 150, 377, 488 |
| BlsI | GCNGC | 3 cut(s) | 151, 378, 489 |
| Bme1390I | CCNGG | 2 cut(s) | 306, 319 |
| BmeT110I | CYCGRG | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 1 cut(s) | 470 |
| BmiI | GGNNCC | 1 cut(s) | 312 |
| BmrFI | CCNGG | 2 cut(s) | 306, 319 |
| BmsI | GCATC | 2 cut(s) | 31, 39 |
| BoxI | GACNNNNGTC | 1 cut(s) | 124 |
| Bpu10I | CCTNAGC | 1 cut(s) | 137 |
| BpuEI | CTTGAG | 1 cut(s) | 368 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 413 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 307, 353 |
| Bse118I | RCCGGY | 1 cut(s) | 472 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| BseBI | CCWGG | 2 cut(s) | 306, 319 |
| BseDI | CCNNGG | 2 cut(s) | 305, 413 |
| BseGI | GGATG | 1 cut(s) | 231 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 307, 353 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseMII | CTCAG | 3 cut(s) | 25, 173, 406 |
| BseXI | GCAGC | 2 cut(s) | 136, 388 |
| BshFI | GGCC | 2 cut(s) | 300, 472 |
| BsiHKCI | CYCGRG | 1 cut(s) | 211 |
| BsiSI | CCGG | 1 cut(s) | 473 |
| BslFI | GGGAC | 2 cut(s) | 69, 231 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 307, 353 |
| BsmAI | GTCTC | 1 cut(s) | 357 |
| BsmFI | GGGAC | 2 cut(s) | 69, 231 |
| BsnI | GGCC | 2 cut(s) | 300, 472 |
| BsoBI | CYCGRG | 1 cut(s) | 211 |
| Bsp143I | GATC | 3 cut(s) | 283, 388, 441 |
| BspACI | CCGC | 1 cut(s) | 487 |
| BspANI | GGCC | 2 cut(s) | 300, 472 |
| BspCNI | CTCAG | 3 cut(s) | 24, 174, 405 |
| BspLI | GGNNCC | 1 cut(s) | 312 |
| BspPI | GGATC | 2 cut(s) | 396, 436 |
| BsrBI | CCGCTC | 1 cut(s) | 487 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrFI | RCCGGY | 1 cut(s) | 472 |
| BssAI | RCCGGY | 1 cut(s) | 472 |
| BssECI | CCNNGG | 2 cut(s) | 305, 413 |
| BssMI | GATC | 3 cut(s) | 283, 388, 441 |
| BssT1I | CCWWGG | 1 cut(s) | 413 |
| Bst2UI | CCWGG | 2 cut(s) | 306, 319 |
| Bst4CI | ACNGT | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 2 cut(s) | 255, 270 |
| BstDEI | CTNAG | 7 cut(s) | 11, 48, 137, 182, 196, 392, 552 |
| BstF5I | GGATG | 1 cut(s) | 231 |
| BstHHI | GCGC | 2 cut(s) | 253, 268 |
| BstKTI | GATC | 3 cut(s) | 286, 391, 444 |
| BstMAI | GTCTC | 1 cut(s) | 357 |
| BstMBI | GATC | 3 cut(s) | 283, 388, 441 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 263, 319 |
| BstNI | CCWGG | 2 cut(s) | 306, 319 |
| BstNSI | RCATGY | 1 cut(s) | 272 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 124 |
| BstSCI | CCNGG | 2 cut(s) | 304, 317 |
| BstV1I | GCAGC | 2 cut(s) | 136, 388 |
| BstX2I | RGATCY | 2 cut(s) | 388, 441 |
| BstYI | RGATCY | 2 cut(s) | 388, 441 |
| BsuRI | GGCC | 2 cut(s) | 300, 472 |
| BtsCI | GGATG | 1 cut(s) | 231 |
| BtsI | GCAGTG | 1 cut(s) | 460 |
| BtsIMutI | CAGTG | 2 cut(s) | 400, 460 |
| Cac8I | GCNNGC | 2 cut(s) | 255, 270 |
| CfoI | GCGC | 2 cut(s) | 253, 268 |
| Cfr10I | RCCGGY | 1 cut(s) | 472 |
| Cfr13I | GGNCC | 1 cut(s) | 470 |
| CviAII | CATG | 3 cut(s) | 146, 269, 372 |
| CviJI | RGCY | 6 cut(s) | 56, 141, 300, 313, 379, 472 |
| CviKI_1 | RGCY | 6 cut(s) | 56, 141, 300, 313, 379, 472 |
| DdeI | CTNAG | 7 cut(s) | 11, 48, 137, 182, 196, 392, 552 |
| DpnI | GATC | 3 cut(s) | 285, 390, 443 |
| DpnII | GATC | 3 cut(s) | 283, 388, 441 |
| DraI | TTTAAA | 1 cut(s) | 529 |
| Eco130I | CCWWGG | 1 cut(s) | 413 |
| Eco32I | GATATC | 1 cut(s) | 72 |
| Eco88I | CYCGRG | 1 cut(s) | 211 |
| EcoRII | CCWGG | 2 cut(s) | 304, 317 |
| EcoRV | GATATC | 1 cut(s) | 72 |
| EcoT14I | CCWWGG | 1 cut(s) | 413 |
| ErhI | CCWWGG | 1 cut(s) | 413 |
| FaeI | CATG | 3 cut(s) | 149, 272, 375 |
| FaiI | YATR | 8 cut(s) | 8, 147, 270, 339, 373, 401, 425, 545 |
| FaqI | GGGAC | 2 cut(s) | 69, 231 |
| FatI | CATG | 3 cut(s) | 145, 268, 371 |
| Fnu4HI | GCNGC | 3 cut(s) | 150, 377, 488 |
| FokI | GGATG | 1 cut(s) | 238 |
| Fsp4HI | GCNGC | 3 cut(s) | 150, 377, 488 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GlaI | GCGC | 2 cut(s) | 252, 267 |
| GluI | GCNGC | 3 cut(s) | 150, 377, 488 |
| HaeIII | GGCC | 2 cut(s) | 300, 472 |
| HapII | CCGG | 1 cut(s) | 473 |
| HhaI | GCGC | 2 cut(s) | 253, 268 |
| Hin1II | CATG | 3 cut(s) | 149, 272, 375 |
| Hin6I | GCGC | 2 cut(s) | 251, 266 |
| HinP1I | GCGC | 2 cut(s) | 251, 266 |
| HinfI | GANTC | 2 cut(s) | 79, 404 |
| HpaII | CCGG | 1 cut(s) | 473 |
| HphI | GGTGA | 4 cut(s) | 212, 251, 440, 512 |
| Hpy188I | TCNGA | 1 cut(s) | 130 |
| Hpy188III | TCNNGA | 1 cut(s) | 445 |
| HpyAV | CCTTC | 2 cut(s) | 55, 152 |
| HpyCH4III | ACNGT | 1 cut(s) | 278 |
| HpyCH4IV | ACGT | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 2 cut(s) | 36, 44 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 263, 319 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 48, 137, 182, 196, 392, 552 |
| HpySE526I | ACGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 3 cut(s) | 149, 272, 375 |
| HspAI | GCGC | 2 cut(s) | 251, 266 |
| Kzo9I | GATC | 3 cut(s) | 283, 388, 441 |
| LmnI | GCTCC | 3 cut(s) | 248, 310, 507 |
| Lsp1109I | GCAGC | 2 cut(s) | 136, 388 |
| LweI | GCATC | 2 cut(s) | 31, 39 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MaeII | ACGT | 1 cut(s) | 259 |
| MalI | GATC | 3 cut(s) | 285, 390, 443 |
| MbiI | CCGCTC | 1 cut(s) | 487 |
| MboI | GATC | 3 cut(s) | 283, 388, 441 |
| MboII | GAAGA | 1 cut(s) | 472 |
| MflI | RGATCY | 2 cut(s) | 388, 441 |
| MluCI | AATT | 3 cut(s) | 19, 90, 114 |
| MnlI | CCTC | 4 cut(s) | 45, 169, 491, 551 |
| MseI | TTAA | 4 cut(s) | 171, 294, 515, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 515 |
| MspI | CCGG | 1 cut(s) | 473 |
| MspR9I | CCNGG | 2 cut(s) | 306, 319 |
| MvaI | CCWGG | 2 cut(s) | 306, 319 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 263, 319 |
| NdeII | GATC | 3 cut(s) | 283, 388, 441 |
| NlaIII | CATG | 3 cut(s) | 149, 272, 375 |
| NlaIV | GGNNCC | 1 cut(s) | 312 |
| NspI | RCATGY | 1 cut(s) | 272 |
| PaeI | GCATGC | 1 cut(s) | 272 |
| PfeI | GAWTC | 2 cut(s) | 79, 404 |
| PkrI | GCNGC | 3 cut(s) | 151, 378, 489 |
| PshAI | GACNNNNGTC | 1 cut(s) | 124 |
| Psp6I | CCWGG | 2 cut(s) | 304, 317 |
| PspGI | CCWGG | 2 cut(s) | 304, 317 |
| PspN4I | GGNNCC | 1 cut(s) | 312 |
| PspPI | GGNCC | 1 cut(s) | 470 |
| PsuI | RGATCY | 2 cut(s) | 388, 441 |
| RseI | CAYNNNNRTG | 1 cut(s) | 515 |
| SaqAI | TTAA | 4 cut(s) | 171, 294, 515, 528 |
| SatI | GCNGC | 3 cut(s) | 150, 377, 488 |
| Sau3AI | GATC | 3 cut(s) | 283, 388, 441 |
| Sau96I | GGNCC | 1 cut(s) | 470 |
| ScrFI | CCNGG | 2 cut(s) | 306, 319 |
| SetI | ASST | 9 cut(s) | 160, 180, 202, 262, 334, 371, 381, 430, 502 |
| SfaNI | GCATC | 2 cut(s) | 31, 39 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 515 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| SphI | GCATGC | 1 cut(s) | 272 |
| Sse9I | AATT | 3 cut(s) | 19, 90, 114 |
| SsiI | CCGC | 1 cut(s) | 487 |
| SspMI | CTAG | 1 cut(s) | 221 |
| StyD4I | CCNGG | 2 cut(s) | 304, 317 |
| StyI | CCWWGG | 1 cut(s) | 413 |
| TaaI | ACNGT | 1 cut(s) | 278 |
| TaiI | ACGT | 1 cut(s) | 262 |
| TasI | AATT | 3 cut(s) | 19, 90, 114 |
| TauI | GCSGC | 1 cut(s) | 490 |
| TfiI | GAWTC | 2 cut(s) | 79, 404 |
| Tru1I | TTAA | 4 cut(s) | 171, 294, 515, 528 |
| Tru9I | TTAA | 4 cut(s) | 171, 294, 515, 528 |
| TscAI | CASTG | 2 cut(s) | 400, 460 |
| TseI | GCWGC | 2 cut(s) | 149, 376 |
| TspDTI | ATGAA | 1 cut(s) | 134 |
| TspRI | CASTG | 2 cut(s) | 400, 460 |
| XceI | RCATGY | 1 cut(s) | 272 |
| XspI | CTAG | 1 cut(s) | 221 |