ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 444 |
| AciI | CCGC | 2 cut(s) | 255, 312 |
| AclWI | GGATC | 3 cut(s) | 149, 272, 385 |
| AcoI | YGGCCR | 1 cut(s) | 282 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcuI | CTGAAG | 2 cut(s) | 53, 486 |
| AcyI | GRCGYC | 1 cut(s) | 441 |
| AdeI | CACNNNGTG | 1 cut(s) | 306 |
| AfaI | GTAC | 2 cut(s) | 49, 97 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 15, 280, 433 |
| AflIII | ACRYGT | 1 cut(s) | 517 |
| AgsI | TTSAA | 2 cut(s) | 54, 332 |
| AluBI | AGCT | 3 cut(s) | 184, 235, 483 |
| AluI | AGCT | 3 cut(s) | 184, 235, 483 |
| AlwI | GGATC | 3 cut(s) | 149, 272, 385 |
| AoxI | GGCC | 1 cut(s) | 282 |
| ApeKI | GCWGC | 5 cut(s) | 58, 290, 458, 461, 470 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| AspLEI | GCGC | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 2 cut(s) | 91, 292 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 31, 63 |
| BbvI | GCAGC | 5 cut(s) | 45, 302, 445, 448, 482 |
| BciVI | GTATCC | 1 cut(s) | 309 |
| BfaI | CTAG | 1 cut(s) | 494 |
| BfuI | GTATCC | 1 cut(s) | 309 |
| BisI | GCNGC | 5 cut(s) | 59, 291, 459, 462, 471 |
| BlsI | GCNGC | 5 cut(s) | 60, 292, 460, 463, 472 |
| BmrI | ACTGGG | 2 cut(s) | 298, 341 |
| BmuI | ACTGGG | 2 cut(s) | 298, 341 |
| BsaAI | YACGTR | 1 cut(s) | 171 |
| BsaHI | GRCGYC | 1 cut(s) | 441 |
| BsaWI | WCCGGW | 1 cut(s) | 35 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 15, 280, 433 |
| Bse1I | ACTGG | 2 cut(s) | 304, 347 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 15, 280, 433 |
| BseNI | ACTGG | 2 cut(s) | 304, 347 |
| BseXI | GCAGC | 5 cut(s) | 45, 302, 445, 448, 482 |
| BshFI | GGCC | 1 cut(s) | 284 |
| BsiSI | CCGG | 2 cut(s) | 36, 281 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 15, 280, 433 |
| BsnI | GGCC | 1 cut(s) | 284 |
| Bsp143I | GATC | 3 cut(s) | 154, 277, 377 |
| BspACI | CCGC | 2 cut(s) | 255, 312 |
| BspANI | GGCC | 1 cut(s) | 284 |
| BspHI | TCATGA | 1 cut(s) | 444 |
| BspPI | GGATC | 3 cut(s) | 149, 272, 385 |
| BspQI | GCTCTTC | 1 cut(s) | 21 |
| BsrI | ACTGG | 2 cut(s) | 304, 347 |
| BssMI | GATC | 3 cut(s) | 154, 277, 377 |
| BssNI | GRCGYC | 1 cut(s) | 441 |
| Bst4CI | ACNGT | 1 cut(s) | 361 |
| Bst6I | CTCTTC | 3 cut(s) | 21, 408, 443 |
| BstACI | GRCGYC | 1 cut(s) | 441 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 270 |
| BstBAI | YACGTR | 1 cut(s) | 171 |
| BstC8I | GCNNGC | 1 cut(s) | 182 |
| BstHHI | GCGC | 1 cut(s) | 180 |
| BstKTI | GATC | 3 cut(s) | 157, 280, 380 |
| BstMBI | GATC | 3 cut(s) | 154, 277, 377 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 28, 137, 146, 261, 270, 290, 467, 470 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSNI | TACGTA | 1 cut(s) | 171 |
| BstV1I | GCAGC | 5 cut(s) | 45, 302, 445, 448, 482 |
| BsuI | GTATCC | 1 cut(s) | 309 |
| BsuRI | GGCC | 1 cut(s) | 284 |
| BtsIMutI | CAGTG | 1 cut(s) | 311 |
| Cac8I | GCNNGC | 1 cut(s) | 182 |
| CciI | TCATGA | 1 cut(s) | 444 |
| CfoI | GCGC | 1 cut(s) | 180 |
| Csp6I | GTAC | 2 cut(s) | 48, 96 |
| CviAII | CATG | 2 cut(s) | 445, 518 |
| CviJI | RGCY | 9 cut(s) | 58, 140, 184, 223, 235, 284, 345, 483, 497 |
| CviKI_1 | RGCY | 9 cut(s) | 58, 140, 184, 223, 235, 284, 345, 483, 497 |
| CviQI | GTAC | 2 cut(s) | 48, 96 |
| DpnI | GATC | 3 cut(s) | 156, 279, 379 |
| DpnII | GATC | 3 cut(s) | 154, 277, 377 |
| DraIII | CACNNNGTG | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 282 |
| Eam1104I | CTCTTC | 3 cut(s) | 21, 408, 443 |
| EarI | CTCTTC | 3 cut(s) | 21, 408, 443 |
| EciI | GGCGGA | 1 cut(s) | 270 |
| Eco105I | TACGTA | 1 cut(s) | 171 |
| Eco57I | CTGAAG | 2 cut(s) | 53, 486 |
| FaeI | CATG | 2 cut(s) | 448, 521 |
| FaiI | YATR | 9 cut(s) | 45, 153, 168, 215, 369, 422, 446, 456, 519 |
| FatI | CATG | 2 cut(s) | 444, 517 |
| FauI | CCCGC | 1 cut(s) | 305 |
| Fnu4HI | GCNGC | 5 cut(s) | 59, 291, 459, 462, 471 |
| Fsp4HI | GCNGC | 5 cut(s) | 59, 291, 459, 462, 471 |
| FspBI | CTAG | 1 cut(s) | 494 |
| GlaI | GCGC | 1 cut(s) | 179 |
| GluI | GCNGC | 5 cut(s) | 59, 291, 459, 462, 471 |
| HaeIII | GGCC | 1 cut(s) | 284 |
| HapII | CCGG | 2 cut(s) | 36, 281 |
| HhaI | GCGC | 1 cut(s) | 180 |
| Hin1I | GRCGYC | 1 cut(s) | 441 |
| Hin1II | CATG | 2 cut(s) | 448, 521 |
| Hin6I | GCGC | 1 cut(s) | 178 |
| HinP1I | GCGC | 1 cut(s) | 178 |
| HincII | GTYRAC | 1 cut(s) | 439 |
| HindII | GTYRAC | 1 cut(s) | 439 |
| HindIII | AAGCTT | 1 cut(s) | 233 |
| HinfI | GANTC | 3 cut(s) | 82, 110, 258 |
| HpaII | CCGG | 2 cut(s) | 36, 281 |
| HphI | GGTGA | 2 cut(s) | 91, 292 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 364, 439 |
| Hpy188I | TCNGA | 1 cut(s) | 93 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 206, 445 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 364, 439 |
| HpyAV | CCTTC | 1 cut(s) | 77 |
| HpyCH4III | ACNGT | 1 cut(s) | 361 |
| HpyCH4IV | ACGT | 2 cut(s) | 170, 441 |
| HpyCH4V | TGCA | 6 cut(s) | 61, 213, 264, 290, 371, 396 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 28, 137, 146, 261, 270, 290, 467, 470 |
| HpySE526I | ACGT | 2 cut(s) | 170, 441 |
| Hsp92I | GRCGYC | 1 cut(s) | 441 |
| Hsp92II | CATG | 2 cut(s) | 448, 521 |
| HspAI | GCGC | 1 cut(s) | 178 |
| Kzo9I | GATC | 3 cut(s) | 154, 277, 377 |
| LguI | GCTCTTC | 1 cut(s) | 21 |
| Lsp1109I | GCAGC | 5 cut(s) | 45, 302, 445, 448, 482 |
| MaeI | CTAG | 1 cut(s) | 494 |
| MaeII | ACGT | 2 cut(s) | 170, 441 |
| MaeIII | GTNAC | 2 cut(s) | 79, 298 |
| MalI | GATC | 3 cut(s) | 156, 279, 379 |
| MboI | GATC | 3 cut(s) | 154, 277, 377 |
| MboII | GAAGA | 6 cut(s) | 38, 51, 119, 133, 425, 460 |
| MfeI | CAATTG | 3 cut(s) | 265, 294, 372 |
| MluCI | AATT | 8 cut(s) | 74, 86, 163, 242, 265, 294, 372, 529 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| MnlI | CCTC | 1 cut(s) | 12 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MseI | TTAA | 1 cut(s) | 532 |
| MspI | CCGG | 2 cut(s) | 36, 281 |
| MunI | CAATTG | 3 cut(s) | 265, 294, 372 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 28, 137, 146, 261, 270, 290, 467, 470 |
| NdeII | GATC | 3 cut(s) | 154, 277, 377 |
| NlaIII | CATG | 2 cut(s) | 448, 521 |
| NmuCI | GTSAC | 2 cut(s) | 79, 298 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PagI | TCATGA | 1 cut(s) | 444 |
| PciI | ACATGT | 1 cut(s) | 517 |
| PciSI | GCTCTTC | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfeI | GAWTC | 2 cut(s) | 110, 258 |
| PkrI | GCNGC | 5 cut(s) | 60, 292, 460, 463, 472 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| Ppu21I | YACGTR | 1 cut(s) | 171 |
| PscI | ACATGT | 1 cut(s) | 517 |
| RsaI | GTAC | 2 cut(s) | 49, 97 |
| RsaNI | GTAC | 2 cut(s) | 48, 96 |
| SapI | GCTCTTC | 1 cut(s) | 21 |
| SaqAI | TTAA | 1 cut(s) | 532 |
| SatI | GCNGC | 5 cut(s) | 59, 291, 459, 462, 471 |
| Sau3AI | GATC | 3 cut(s) | 154, 277, 377 |
| SchI | GAGTC | 1 cut(s) | 76 |
| SetI | ASST | 7 cut(s) | 69, 104, 173, 186, 237, 444, 485 |
| SnaBI | TACGTA | 1 cut(s) | 171 |
| Sse9I | AATT | 8 cut(s) | 74, 86, 163, 242, 265, 294, 372, 529 |
| SsiI | CCGC | 2 cut(s) | 255, 312 |
| SspMI | CTAG | 1 cut(s) | 494 |
| TaaI | ACNGT | 1 cut(s) | 361 |
| TaiI | ACGT | 2 cut(s) | 173, 444 |
| TasI | AATT | 8 cut(s) | 74, 86, 163, 242, 265, 294, 372, 529 |
| TfiI | GAWTC | 2 cut(s) | 110, 258 |
| Tru1I | TTAA | 1 cut(s) | 532 |
| Tru9I | TTAA | 1 cut(s) | 532 |
| TscAI | CASTG | 1 cut(s) | 311 |
| TseFI | GTSAC | 2 cut(s) | 79, 298 |
| TseI | GCWGC | 5 cut(s) | 58, 290, 458, 461, 470 |
| Tsp45I | GTSAC | 2 cut(s) | 79, 298 |
| TspDTI | ATGAA | 2 cut(s) | 437, 461 |
| TspGWI | ACGGA | 1 cut(s) | 425 |
| TspRI | CASTG | 1 cut(s) | 311 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 505 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| XspI | CTAG | 1 cut(s) | 494 |
| ZraI | GACGTC | 1 cut(s) | 442 |