ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 419 |
| Acc36I | ACCTGC | 1 cut(s) | 419 |
| AciI | CCGC | 5 cut(s) | 654, 659, 678, 740, 764 |
| AclWI | GGATC | 2 cut(s) | 722, 735 |
| AcsI | RAATTY | 3 cut(s) | 67, 569, 696 |
| AfaI | GTAC | 2 cut(s) | 114, 560 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 123, 124, 655, 687, 688, 689 |
| AgsI | TTSAA | 6 cut(s) | 66, 74, 220, 268, 424, 554 |
| AjnI | CCWGG | 2 cut(s) | 122, 574 |
| AluBI | AGCT | 2 cut(s) | 22, 664 |
| AluI | AGCT | 2 cut(s) | 22, 664 |
| Alw21I | GWGCWC | 1 cut(s) | 666 |
| AlwI | GGATC | 2 cut(s) | 722, 735 |
| AoxI | GGCC | 2 cut(s) | 447, 578 |
| ApoI | RAATTY | 3 cut(s) | 67, 569, 696 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 215, 534 |
| AspS9I | GGNCC | 1 cut(s) | 578 |
| AsuHPI | GGTGA | 5 cut(s) | 287, 290, 371, 409, 443 |
| BamHI | GGATCC | 1 cut(s) | 727 |
| BanII | GRGCYC | 1 cut(s) | 666 |
| BbsI | GAAGAC | 1 cut(s) | 218 |
| Bbv12I | GWGCWC | 1 cut(s) | 666 |
| BccI | CCATC | 4 cut(s) | 98, 716, 752, 763 |
| BciT130I | CCWGG | 2 cut(s) | 124, 576 |
| BciVI | GTATCC | 1 cut(s) | 666 |
| BfaI | CTAG | 1 cut(s) | 183 |
| BfmI | CTRYAG | 1 cut(s) | 684 |
| BfuAI | ACCTGC | 1 cut(s) | 419 |
| BfuI | GTATCC | 1 cut(s) | 666 |
| Bme1390I | CCNGG | 2 cut(s) | 124, 576 |
| BmgT120I | GGNCC | 1 cut(s) | 578 |
| BmiI | GGNNCC | 1 cut(s) | 729 |
| BmrFI | CCNGG | 2 cut(s) | 124, 576 |
| BmsI | GCATC | 3 cut(s) | 163, 187, 222 |
| BpiI | GAAGAC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 1 cut(s) | 510 |
| BsaBI | GATNNNNATC | 1 cut(s) | 726 |
| BsaJI | CCNNGG | 3 cut(s) | 123, 450, 575 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 123, 124, 655, 687, 688, 689 |
| Bse8I | GATNNNNATC | 1 cut(s) | 726 |
| BseBI | CCWGG | 2 cut(s) | 124, 576 |
| BseDI | CCNNGG | 3 cut(s) | 123, 450, 575 |
| BseGI | GGATG | 6 cut(s) | 202, 379, 642, 727, 763, 774 |
| BseJI | GATNNNNATC | 1 cut(s) | 726 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 123, 124, 655, 687, 688, 689 |
| BseRI | GAGGAG | 1 cut(s) | 585 |
| BseYI | CCCAGC | 1 cut(s) | 650 |
| BshFI | GGCC | 2 cut(s) | 449, 580 |
| BsiHKAI | GWGCWC | 1 cut(s) | 666 |
| BslFI | GGGAC | 1 cut(s) | 717 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 123, 124, 655, 687, 688, 689 |
| BsmFI | GGGAC | 1 cut(s) | 717 |
| BsmI | GAATGC | 2 cut(s) | 192, 594 |
| BsnI | GGCC | 2 cut(s) | 449, 580 |
| Bsp1286I | GDGCHC | 1 cut(s) | 666 |
| Bsp143I | GATC | 4 cut(s) | 248, 277, 340, 727 |
| Bsp19I | CCATGG | 1 cut(s) | 450 |
| BspACI | CCGC | 5 cut(s) | 654, 659, 678, 740, 764 |
| BspANI | GGCC | 2 cut(s) | 449, 580 |
| BspLI | GGNNCC | 1 cut(s) | 729 |
| BspMI | ACCTGC | 1 cut(s) | 419 |
| BspPI | GGATC | 2 cut(s) | 722, 735 |
| BssECI | CCNNGG | 3 cut(s) | 123, 450, 575 |
| BssMI | GATC | 4 cut(s) | 248, 277, 340, 727 |
| BssT1I | CCWWGG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 2 cut(s) | 124, 576 |
| Bst4CI | ACNGT | 1 cut(s) | 30 |
| Bst6I | CTCTTC | 1 cut(s) | 525 |
| BstC8I | GCNNGC | 2 cut(s) | 20, 146 |
| BstDEI | CTNAG | 1 cut(s) | 747 |
| BstDSI | CCRYGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 6 cut(s) | 202, 379, 642, 727, 763, 774 |
| BstKTI | GATC | 4 cut(s) | 251, 280, 343, 730 |
| BstMBI | GATC | 4 cut(s) | 248, 277, 340, 727 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 455 |
| BstNI | CCWGG | 2 cut(s) | 124, 576 |
| BstSCI | CCNGG | 2 cut(s) | 122, 574 |
| BstSFI | CTRYAG | 1 cut(s) | 684 |
| BstV2I | GAAGAC | 1 cut(s) | 218 |
| BstX2I | RGATCY | 1 cut(s) | 727 |
| BstYI | RGATCY | 1 cut(s) | 727 |
| BsuI | GTATCC | 1 cut(s) | 666 |
| BsuRI | GGCC | 2 cut(s) | 449, 580 |
| BtgI | CCRYGG | 1 cut(s) | 450 |
| BtgZI | GCGATG | 1 cut(s) | 43 |
| BtsCI | GGATG | 6 cut(s) | 202, 379, 642, 727, 763, 774 |
| BveI | ACCTGC | 1 cut(s) | 419 |
| Cac8I | GCNNGC | 2 cut(s) | 20, 146 |
| Cfr13I | GGNCC | 1 cut(s) | 578 |
| Csp6I | GTAC | 2 cut(s) | 113, 559 |
| CviAII | CATG | 5 cut(s) | 92, 286, 338, 451, 480 |
| CviJI | RGCY | 7 cut(s) | 22, 122, 144, 449, 470, 580, 664 |
| CviKI_1 | RGCY | 7 cut(s) | 22, 122, 144, 449, 470, 580, 664 |
| CviQI | GTAC | 2 cut(s) | 113, 559 |
| DdeI | CTNAG | 1 cut(s) | 747 |
| DpnI | GATC | 4 cut(s) | 250, 279, 342, 729 |
| DpnII | GATC | 4 cut(s) | 248, 277, 340, 727 |
| Eam1104I | CTCTTC | 1 cut(s) | 525 |
| EarI | CTCTTC | 1 cut(s) | 525 |
| EciI | GGCGGA | 1 cut(s) | 674 |
| Ecl136II | GAGCTC | 1 cut(s) | 664 |
| Eco130I | CCWWGG | 1 cut(s) | 450 |
| Eco24I | GRGCYC | 1 cut(s) | 666 |
| Eco53kI | GAGCTC | 1 cut(s) | 664 |
| EcoICRI | GAGCTC | 1 cut(s) | 664 |
| EcoRII | CCWGG | 2 cut(s) | 122, 574 |
| EcoT14I | CCWWGG | 1 cut(s) | 450 |
| EcoT22I | ATGCAT | 2 cut(s) | 156, 192 |
| EcoT38I | GRGCYC | 1 cut(s) | 666 |
| ErhI | CCWWGG | 1 cut(s) | 450 |
| FaeI | CATG | 5 cut(s) | 95, 289, 341, 454, 483 |
| FaqI | GGGAC | 1 cut(s) | 717 |
| FatI | CATG | 5 cut(s) | 91, 285, 337, 450, 479 |
| FauI | CCCGC | 4 cut(s) | 647, 685, 747, 757 |
| FauNDI | CATATG | 1 cut(s) | 583 |
| FokI | GGATG | 5 cut(s) | 209, 386, 649, 734, 770 |
| FriOI | GRGCYC | 1 cut(s) | 666 |
| FspBI | CTAG | 1 cut(s) | 183 |
| GsaI | CCCAGC | 1 cut(s) | 654 |
| HaeIII | GGCC | 2 cut(s) | 449, 580 |
| Hin1II | CATG | 5 cut(s) | 95, 289, 341, 454, 483 |
| HinfI | GANTC | 1 cut(s) | 620 |
| HphI | GGTGA | 5 cut(s) | 287, 290, 371, 409, 443 |
| Hpy188III | TCNNGA | 1 cut(s) | 527 |
| HpyAV | CCTTC | 2 cut(s) | 262, 266 |
| HpyCH4III | ACNGT | 1 cut(s) | 30 |
| HpyCH4IV | ACGT | 1 cut(s) | 215 |
| HpyCH4V | TGCA | 5 cut(s) | 18, 88, 154, 190, 235 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 455 |
| HpyF3I | CTNAG | 1 cut(s) | 747 |
| HpySE526I | ACGT | 1 cut(s) | 215 |
| Hsp92II | CATG | 5 cut(s) | 95, 289, 341, 454, 483 |
| Kzo9I | GATC | 4 cut(s) | 248, 277, 340, 727 |
| LmnI | GCTCC | 2 cut(s) | 661, 669 |
| LpnPI | CCDG | 7 cut(s) | 109, 126, 136, 414, 561, 588, 664 |
| LweI | GCATC | 3 cut(s) | 163, 187, 222 |
| MaeI | CTAG | 1 cut(s) | 183 |
| MaeII | ACGT | 1 cut(s) | 215 |
| MaeIII | GTNAC | 4 cut(s) | 256, 281, 397, 431 |
| MalI | GATC | 4 cut(s) | 250, 279, 342, 729 |
| MboI | GATC | 4 cut(s) | 248, 277, 340, 727 |
| MboII | GAAGA | 4 cut(s) | 107, 223, 542, 595 |
| MflI | RGATCY | 1 cut(s) | 727 |
| MhlI | GDGCHC | 1 cut(s) | 666 |
| MluCI | AATT | 5 cut(s) | 67, 158, 506, 569, 696 |
| MlyI | GAGTC | 1 cut(s) | 629 |
| MmeI | TCCRAC | 2 cut(s) | 366, 631 |
| MnlI | CCTC | 9 cut(s) | 59, 201, 364, 373, 439, 460, 526, 603, 606 |
| Mph1103I | ATGCAT | 2 cut(s) | 156, 192 |
| MroXI | GAANNNNTTC | 2 cut(s) | 215, 534 |
| MseI | TTAA | 2 cut(s) | 164, 348 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspA1I | CMGCKG | 1 cut(s) | 654 |
| MspR9I | CCNGG | 2 cut(s) | 124, 576 |
| Mva1269I | GAATGC | 2 cut(s) | 192, 594 |
| MvaI | CCWGG | 2 cut(s) | 124, 576 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 455 |
| NcoI | CCATGG | 1 cut(s) | 450 |
| NdeI | CATATG | 1 cut(s) | 583 |
| NdeII | GATC | 4 cut(s) | 248, 277, 340, 727 |
| NlaIII | CATG | 5 cut(s) | 95, 289, 341, 454, 483 |
| NlaIV | GGNNCC | 1 cut(s) | 729 |
| NmuCI | GTSAC | 3 cut(s) | 256, 397, 431 |
| NsiI | ATGCAT | 2 cut(s) | 156, 192 |
| PaqCI | CACCTGC | 1 cut(s) | 419 |
| PctI | GAATGC | 2 cut(s) | 192, 594 |
| PdmI | GAANNNNTTC | 2 cut(s) | 215, 534 |
| PleI | GAGTC | 1 cut(s) | 628 |
| PpsI | GAGTC | 1 cut(s) | 628 |
| Psp124BI | GAGCTC | 1 cut(s) | 666 |
| Psp6I | CCWGG | 2 cut(s) | 122, 574 |
| PspFI | CCCAGC | 1 cut(s) | 650 |
| PspGI | CCWGG | 2 cut(s) | 122, 574 |
| PspN4I | GGNNCC | 1 cut(s) | 729 |
| PspPI | GGNCC | 1 cut(s) | 578 |
| PsuI | RGATCY | 1 cut(s) | 727 |
| RsaI | GTAC | 2 cut(s) | 114, 560 |
| RsaNI | GTAC | 2 cut(s) | 113, 559 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SacI | GAGCTC | 1 cut(s) | 666 |
| SaqAI | TTAA | 2 cut(s) | 164, 348 |
| Sau3AI | GATC | 4 cut(s) | 248, 277, 340, 727 |
| Sau96I | GGNCC | 1 cut(s) | 578 |
| SchI | GAGTC | 1 cut(s) | 629 |
| ScrFI | CCNGG | 2 cut(s) | 124, 576 |
| SduI | GDGCHC | 1 cut(s) | 666 |
| SetI | ASST | 8 cut(s) | 24, 51, 218, 277, 357, 433, 537, 666 |
| SfaNI | GCATC | 3 cut(s) | 163, 187, 222 |
| SfcI | CTRYAG | 1 cut(s) | 684 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| SmlI | CTYRAG | 1 cut(s) | 525 |
| SmoI | CTYRAG | 1 cut(s) | 525 |
| Sse9I | AATT | 5 cut(s) | 67, 158, 506, 569, 696 |
| SsiI | CCGC | 5 cut(s) | 654, 659, 678, 740, 764 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 1 cut(s) | 183 |
| SstI | GAGCTC | 1 cut(s) | 666 |
| StyD4I | CCNGG | 2 cut(s) | 122, 574 |
| StyI | CCWWGG | 1 cut(s) | 450 |
| TaaI | ACNGT | 1 cut(s) | 30 |
| TaiI | ACGT | 1 cut(s) | 218 |
| TaqI | TCGA | 1 cut(s) | 251 |
| TasI | AATT | 5 cut(s) | 67, 158, 506, 569, 696 |
| Tru1I | TTAA | 2 cut(s) | 164, 348 |
| Tru9I | TTAA | 2 cut(s) | 164, 348 |
| TseFI | GTSAC | 3 cut(s) | 256, 397, 431 |
| Tsp45I | GTSAC | 3 cut(s) | 256, 397, 431 |
| TspDTI | ATGAA | 2 cut(s) | 108, 512 |
| TspGWI | ACGGA | 1 cut(s) | 22 |
| XapI | RAATTY | 3 cut(s) | 67, 569, 696 |
| XmnI | GAANNNNTTC | 2 cut(s) | 215, 534 |
| XspI | CTAG | 1 cut(s) | 183 |
| Zsp2I | ATGCAT | 2 cut(s) | 156, 192 |