Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 716 |
| AciI | CCGC | 6 cut(s) | 271, 714, 814, 868, 892, 962 |
| AclWI | GGATC | 1 cut(s) | 1040 |
| AcoI | YGGCCR | 1 cut(s) | 946 |
| AcsI | RAATTY | 1 cut(s) | 466 |
| AcyI | GRCGYC | 1 cut(s) | 925 |
| AdeI | CACNNNGTG | 1 cut(s) | 560 |
| AfaI | GTAC | 2 cut(s) | 505, 598 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 373 |
| AgsI | TTSAA | 9 cut(s) | 67, 143, 243, 331, 443, 637, 644, 659, 958 |
| AjiI | CACGTC | 1 cut(s) | 459 |
| AjnI | CCWGG | 1 cut(s) | 308 |
| AluBI | AGCT | 4 cut(s) | 148, 625, 647, 1043 |
| AluI | AGCT | 4 cut(s) | 148, 625, 647, 1043 |
| Alw21I | GWGCWC | 1 cut(s) | 1045 |
| AlwI | GGATC | 1 cut(s) | 1040 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 625 |
| Ama87I | CYCGRG | 3 cut(s) | 367, 450, 1044 |
| AoxI | GGCC | 3 cut(s) | 208, 364, 946 |
| ApeKI | GCWGC | 2 cut(s) | 148, 625 |
| ApoI | RAATTY | 1 cut(s) | 466 |
| AspLEI | GCGC | 2 cut(s) | 486, 984 |
| AspS9I | GGNCC | 1 cut(s) | 365 |
| AsuHPI | GGTGA | 1 cut(s) | 694 |
| AsuII | TTCGAA | 1 cut(s) | 827 |
| AvaI | CYCGRG | 3 cut(s) | 367, 450, 1044 |
| AxyI | CCTNAGG | 1 cut(s) | 278 |
| BanII | GRGCYC | 2 cut(s) | 856, 1045 |
| Bbv12I | GWGCWC | 1 cut(s) | 1045 |
| BbvI | GCAGC | 2 cut(s) | 135, 612 |
| BccI | CCATC | 3 cut(s) | 356, 997, 1016 |
| BceAI | ACGGC | 1 cut(s) | 933 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1015, 1049 |
| BciT130I | CCWGG | 1 cut(s) | 310 |
| BclI | TGATCA | 2 cut(s) | 568, 846 |
| BfaI | CTAG | 5 cut(s) | 57, 216, 428, 488, 594 |
| BfoI | RGCGCY | 1 cut(s) | 985 |
| BglII | AGATCT | 1 cut(s) | 263 |
| BisI | GCNGC | 6 cut(s) | 149, 272, 626, 714, 868, 892 |
| BlsI | GCNGC | 6 cut(s) | 150, 273, 627, 715, 869, 893 |
| BmcAI | AGTACT | 1 cut(s) | 598 |
| Bme1390I | CCNGG | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 3 cut(s) | 367, 450, 1044 |
| BmgBI | CACGTC | 1 cut(s) | 459 |
| BmgT120I | GGNCC | 1 cut(s) | 365 |
| BmiI | GGNNCC | 1 cut(s) | 275 |
| BmrFI | CCNGG | 1 cut(s) | 310 |
| BmrI | ACTGGG | 1 cut(s) | 552 |
| BmsI | GCATC | 3 cut(s) | 45, 679, 960 |
| BmuI | ACTGGG | 1 cut(s) | 552 |
| BpmI | CTGGAG | 2 cut(s) | 777, 1060 |
| Bpu14I | TTCGAA | 1 cut(s) | 827 |
| BsaBI | GATNNNNATC | 1 cut(s) | 567 |
| BsaHI | GRCGYC | 1 cut(s) | 925 |
| BsaJI | CCNNGG | 1 cut(s) | 308 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 775, 801, 805, 831 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 373 |
| Bse118I | RCCGGY | 1 cut(s) | 944 |
| Bse1I | ACTGG | 3 cut(s) | 229, 558, 1077 |
| Bse21I | CCTNAGG | 1 cut(s) | 278 |
| Bse8I | GATNNNNATC | 1 cut(s) | 567 |
| BseBI | CCWGG | 1 cut(s) | 310 |
| BseDI | CCNNGG | 1 cut(s) | 308 |
| BseGI | GGATG | 2 cut(s) | 661, 1003 |
| BseJI | GATNNNNATC | 1 cut(s) | 567 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 373 |
| BseMII | CTCAG | 1 cut(s) | 657 |
| BseNI | ACTGG | 3 cut(s) | 229, 558, 1077 |
| BseX3I | CGGCCG | 1 cut(s) | 946 |
| BseXI | GCAGC | 2 cut(s) | 135, 612 |
| BseYI | CCCAGC | 1 cut(s) | 855 |
| BsgI | GTGCAG | 1 cut(s) | 611 |
| Bsh1236I | CGCG | 1 cut(s) | 716 |
| Bsh1285I | CGRYCG | 2 cut(s) | 949, 1018 |
| BshFI | GGCC | 3 cut(s) | 210, 366, 948 |
| BsiEI | CGRYCG | 2 cut(s) | 949, 1018 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1045 |
| BsiHKCI | CYCGRG | 3 cut(s) | 367, 450, 1044 |
| BsiSI | CCGG | 2 cut(s) | 778, 945 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 373 |
| BsnI | GGCC | 3 cut(s) | 210, 366, 948 |
| BsoBI | CYCGRG | 3 cut(s) | 367, 450, 1044 |
| Bsp119I | TTCGAA | 1 cut(s) | 827 |
| Bsp1286I | GDGCHC | 2 cut(s) | 856, 1045 |
| Bsp1407I | TGTACA | 1 cut(s) | 503 |
| Bsp143I | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| BspACI | CCGC | 6 cut(s) | 271, 714, 814, 868, 892, 962 |
| BspANI | GGCC | 3 cut(s) | 210, 366, 948 |
| BspCNI | CTCAG | 1 cut(s) | 658 |
| BspFNI | CGCG | 1 cut(s) | 716 |
| BspLI | GGNNCC | 1 cut(s) | 275 |
| BspPI | GGATC | 1 cut(s) | 1040 |
| BspT104I | TTCGAA | 1 cut(s) | 827 |
| BsrFI | RCCGGY | 1 cut(s) | 944 |
| BsrGI | TGTACA | 1 cut(s) | 503 |
| BsrI | ACTGG | 3 cut(s) | 229, 558, 1077 |
| BssAI | RCCGGY | 1 cut(s) | 944 |
| BssECI | CCNNGG | 1 cut(s) | 308 |
| BssMI | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| BssNI | GRCGYC | 1 cut(s) | 925 |
| Bst2UI | CCWGG | 1 cut(s) | 310 |
| Bst4CI | ACNGT | 2 cut(s) | 184, 250 |
| Bst6I | CTCTTC | 1 cut(s) | 760 |
| BstACI | GRCGYC | 1 cut(s) | 925 |
| BstAUI | TGTACA | 1 cut(s) | 503 |
| BstBI | TTCGAA | 1 cut(s) | 827 |
| BstC8I | GCNNGC | 2 cut(s) | 896, 1057 |
| BstDEI | CTNAG | 4 cut(s) | 17, 278, 666, 974 |
| BstF5I | GGATG | 2 cut(s) | 661, 1003 |
| BstFNI | CGCG | 1 cut(s) | 716 |
| BstH2I | RGCGCY | 1 cut(s) | 985 |
| BstHHI | GCGC | 2 cut(s) | 486, 984 |
| BstKTI | GATC | 8 cut(s) | 78, 123, 266, 493, 571, 849, 1018, 1035 |
| BstMBI | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| BstMCI | CGRYCG | 2 cut(s) | 949, 1018 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 970, 979, 1056 |
| BstNI | CCWGG | 1 cut(s) | 310 |
| BstNSI | RCATGY | 1 cut(s) | 1059 |
| BstSCI | CCNGG | 1 cut(s) | 308 |
| BstUI | CGCG | 1 cut(s) | 716 |
| BstV1I | GCAGC | 2 cut(s) | 135, 612 |
| BstX2I | RGATCY | 1 cut(s) | 263 |
| BstYI | RGATCY | 1 cut(s) | 263 |
| BstZI | CGGCCG | 1 cut(s) | 946 |
| Bsu36I | CCTNAGG | 1 cut(s) | 278 |
| BsuRI | GGCC | 3 cut(s) | 210, 366, 948 |
| BtgZI | GCGATG | 1 cut(s) | 994 |
| BtrI | CACGTC | 1 cut(s) | 459 |
| BtsCI | GGATG | 2 cut(s) | 661, 1003 |
| BtsIMutI | CAGTG | 2 cut(s) | 222, 565 |
| Cac8I | GCNNGC | 2 cut(s) | 896, 1057 |
| CaiI | CAGNNNCTG | 1 cut(s) | 625 |
| CfoI | GCGC | 2 cut(s) | 486, 984 |
| Cfr10I | RCCGGY | 1 cut(s) | 944 |
| Cfr13I | GGNCC | 1 cut(s) | 365 |
| CseI | GACGC | 2 cut(s) | 705, 933 |
| Csp6I | GTAC | 2 cut(s) | 504, 597 |
| CviAII | CATG | 3 cut(s) | 513, 1027, 1056 |
| CviQI | GTAC | 2 cut(s) | 504, 597 |
| DdeI | CTNAG | 4 cut(s) | 17, 278, 666, 974 |
| DpnI | GATC | 8 cut(s) | 77, 122, 265, 492, 570, 848, 1017, 1034 |
| DpnII | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| DraIII | CACNNNGTG | 1 cut(s) | 560 |
| EaeI | YGGCCR | 1 cut(s) | 946 |
| EagI | CGGCCG | 1 cut(s) | 946 |
| Eam1104I | CTCTTC | 1 cut(s) | 760 |
| EarI | CTCTTC | 1 cut(s) | 760 |
| Ecl136II | GAGCTC | 1 cut(s) | 1043 |
| EclXI | CGGCCG | 1 cut(s) | 946 |
| Eco24I | GRGCYC | 2 cut(s) | 856, 1045 |
| Eco52I | CGGCCG | 1 cut(s) | 946 |
| Eco53kI | GAGCTC | 1 cut(s) | 1043 |
| Eco81I | CCTNAGG | 1 cut(s) | 278 |
| Eco88I | CYCGRG | 3 cut(s) | 367, 450, 1044 |
| EcoICRI | GAGCTC | 1 cut(s) | 1043 |
| EcoRI | GAATTC | 1 cut(s) | 466 |
| EcoRII | CCWGG | 1 cut(s) | 308 |
| EcoT38I | GRGCYC | 2 cut(s) | 856, 1045 |
| FaeI | CATG | 3 cut(s) | 516, 1030, 1059 |
| FatI | CATG | 3 cut(s) | 512, 1026, 1055 |
| FauI | CCCGC | 1 cut(s) | 969 |
| FbaI | TGATCA | 2 cut(s) | 568, 846 |
| Fnu4HI | GCNGC | 6 cut(s) | 149, 272, 626, 714, 868, 892 |
| FokI | GGATG | 2 cut(s) | 648, 990 |
| FriOI | GRGCYC | 2 cut(s) | 856, 1045 |
| Fsp4HI | GCNGC | 6 cut(s) | 149, 272, 626, 714, 868, 892 |
| FspBI | CTAG | 5 cut(s) | 57, 216, 428, 488, 594 |
| GlaI | GCGC | 2 cut(s) | 485, 983 |
| GluI | GCNGC | 6 cut(s) | 149, 272, 626, 714, 868, 892 |
| GsaI | CCCAGC | 1 cut(s) | 859 |
| GsuI | CTGGAG | 2 cut(s) | 777, 1060 |
| HaeII | RGCGCY | 1 cut(s) | 985 |
| HaeIII | GGCC | 3 cut(s) | 210, 366, 948 |
| HapII | CCGG | 2 cut(s) | 778, 945 |
| HgaI | GACGC | 2 cut(s) | 705, 933 |
| HhaI | GCGC | 2 cut(s) | 486, 984 |
| Hin1I | GRCGYC | 1 cut(s) | 925 |
| Hin1II | CATG | 3 cut(s) | 516, 1030, 1059 |
| Hin6I | GCGC | 2 cut(s) | 484, 982 |
| HinP1I | GCGC | 2 cut(s) | 484, 982 |
| HinfI | GANTC | 3 cut(s) | 299, 563, 633 |
| HpaII | CCGG | 2 cut(s) | 778, 945 |
| HphI | GGTGA | 1 cut(s) | 694 |
| Hpy166II | GTNNAC | 3 cut(s) | 504, 506, 935 |
| Hpy188I | TCNGA | 9 cut(s) | 178, 292, 472, 568, 621, 846, 851, 1040, 1083 |
| Hpy188III | TCNNGA | 4 cut(s) | 243, 401, 665, 876 |
| Hpy8I | GTNNAC | 3 cut(s) | 504, 506, 935 |
| Hpy99I | CGWCG | 3 cut(s) | 460, 927, 1040 |
| HpyAV | CCTTC | 7 cut(s) | 123, 366, 519, 730, 782, 834, 1070 |
| HpyCH4III | ACNGT | 2 cut(s) | 184, 250 |
| HpyCH4IV | ACGT | 2 cut(s) | 256, 458 |
| HpyCH4V | TGCA | 5 cut(s) | 42, 151, 536, 628, 1055 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 970, 979, 1056 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 278, 666, 974 |
| HpySE526I | ACGT | 2 cut(s) | 256, 458 |
| Hsp92I | GRCGYC | 1 cut(s) | 925 |
| Hsp92II | CATG | 3 cut(s) | 516, 1030, 1059 |
| HspAI | GCGC | 2 cut(s) | 484, 982 |
| Ksp22I | TGATCA | 2 cut(s) | 568, 846 |
| Kzo9I | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| LmnI | GCTCC | 2 cut(s) | 279, 1040 |
| Lsp1109I | GCAGC | 2 cut(s) | 135, 612 |
| LweI | GCATC | 3 cut(s) | 45, 679, 960 |
| MaeI | CTAG | 5 cut(s) | 57, 216, 428, 488, 594 |
| MaeII | ACGT | 2 cut(s) | 256, 458 |
| MaeIII | GTNAC | 2 cut(s) | 671, 706 |
| MalI | GATC | 8 cut(s) | 77, 122, 265, 492, 570, 848, 1017, 1034 |
| MboI | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| MboII | GAAGA | 5 cut(s) | 94, 367, 747, 750, 753 |
| MflI | RGATCY | 1 cut(s) | 263 |
| MhlI | GDGCHC | 2 cut(s) | 856, 1045 |
| MluCI | AATT | 4 cut(s) | 25, 96, 172, 466 |
| MmeI | TCCRAC | 1 cut(s) | 1018 |
| MseI | TTAA | 2 cut(s) | 342, 587 |
| MslI | CAYNNNNRTG | 1 cut(s) | 511 |
| MspI | CCGG | 2 cut(s) | 778, 945 |
| MspR9I | CCNGG | 1 cut(s) | 310 |
| MvaI | CCWGG | 1 cut(s) | 310 |
| MvnI | CGCG | 1 cut(s) | 716 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 970, 979, 1056 |
| NdeII | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| NlaIII | CATG | 3 cut(s) | 516, 1030, 1059 |
| NlaIV | GGNNCC | 1 cut(s) | 275 |
| NmuCI | GTSAC | 2 cut(s) | 671, 706 |
| NspI | RCATGY | 1 cut(s) | 1059 |
| NspV | TTCGAA | 1 cut(s) | 827 |
| PaeI | GCATGC | 1 cut(s) | 1059 |
| PaeR7I | CTCGAG | 1 cut(s) | 1044 |
| PfeI | GAWTC | 3 cut(s) | 299, 563, 633 |
| PkrI | GCNGC | 6 cut(s) | 150, 273, 627, 715, 869, 893 |
| Ple19I | CGATCG | 1 cut(s) | 1018 |
| Psp124BI | GAGCTC | 1 cut(s) | 1045 |
| Psp6I | CCWGG | 1 cut(s) | 308 |
| PspFI | CCCAGC | 1 cut(s) | 855 |
| PspGI | CCWGG | 1 cut(s) | 308 |
| PspN4I | GGNNCC | 1 cut(s) | 275 |
| PspPI | GGNCC | 1 cut(s) | 365 |
| PspXI | VCTCGAGB | 1 cut(s) | 1044 |
| PstNI | CAGNNNCTG | 1 cut(s) | 625 |
| PsuI | RGATCY | 1 cut(s) | 263 |
| PvuI | CGATCG | 1 cut(s) | 1018 |
| RsaI | GTAC | 2 cut(s) | 505, 598 |
| RsaNI | GTAC | 2 cut(s) | 504, 597 |
| RseI | CAYNNNNRTG | 1 cut(s) | 511 |
| SacI | GAGCTC | 1 cut(s) | 1045 |
| SaqAI | TTAA | 2 cut(s) | 342, 587 |
| SatI | GCNGC | 6 cut(s) | 149, 272, 626, 714, 868, 892 |
| Sau3AI | GATC | 8 cut(s) | 75, 120, 263, 490, 568, 846, 1015, 1032 |
| Sau96I | GGNCC | 1 cut(s) | 365 |
| ScaI | AGTACT | 1 cut(s) | 598 |
| ScrFI | CCNGG | 1 cut(s) | 310 |
| SduI | GDGCHC | 2 cut(s) | 856, 1045 |
| SfaNI | GCATC | 3 cut(s) | 45, 679, 960 |
| Sfr274I | CTCGAG | 1 cut(s) | 1044 |
| SfuI | TTCGAA | 1 cut(s) | 827 |
| SlaI | CTCGAG | 1 cut(s) | 1044 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 511 |
| SmlI | CTYRAG | 1 cut(s) | 1044 |
| SmoI | CTYRAG | 1 cut(s) | 1044 |
| SphI | GCATGC | 1 cut(s) | 1059 |
| Sse9I | AATT | 4 cut(s) | 25, 96, 172, 466 |
| SsiI | CCGC | 6 cut(s) | 271, 714, 814, 868, 892, 962 |
| SspMI | CTAG | 5 cut(s) | 57, 216, 428, 488, 594 |
| SstI | GAGCTC | 1 cut(s) | 1045 |
| StyD4I | CCNGG | 1 cut(s) | 308 |
| TaaI | ACNGT | 2 cut(s) | 184, 250 |
| TaiI | ACGT | 2 cut(s) | 259, 461 |
| TaqI | TCGA | 6 cut(s) | 88, 127, 827, 875, 1018, 1045 |
| TasI | AATT | 4 cut(s) | 25, 96, 172, 466 |
| TatI | WGTACW | 2 cut(s) | 503, 596 |
| TauI | GCSGC | 4 cut(s) | 274, 716, 870, 894 |
| TfiI | GAWTC | 3 cut(s) | 299, 563, 633 |
| Tru1I | TTAA | 2 cut(s) | 342, 587 |
| Tru9I | TTAA | 2 cut(s) | 342, 587 |
| TscAI | CASTG | 2 cut(s) | 229, 565 |
| TseFI | GTSAC | 2 cut(s) | 671, 706 |
| TseI | GCWGC | 2 cut(s) | 148, 625 |
| Tsp45I | GTSAC | 2 cut(s) | 671, 706 |
| TspDTI | ATGAA | 3 cut(s) | 348, 501, 536 |
| TspRI | CASTG | 2 cut(s) | 229, 565 |
| XapI | RAATTY | 1 cut(s) | 466 |
| XceI | RCATGY | 1 cut(s) | 1059 |
| XhoI | CTCGAG | 1 cut(s) | 1044 |
| XspI | CTAG | 5 cut(s) | 57, 216, 428, 488, 594 |
| ZrmI | AGTACT | 1 cut(s) | 598 |