ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 165, 258 |
| AccBSI | CCGCTC | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 539 |
| AciI | CCGC | 3 cut(s) | 463, 587, 644 |
| AclWI | GGATC | 1 cut(s) | 758 |
| AcsI | RAATTY | 2 cut(s) | 728, 891 |
| AcuI | CTGAAG | 2 cut(s) | 813, 862 |
| AfaI | GTAC | 3 cut(s) | 180, 247, 633 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 399, 775 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 4 cut(s) | 136, 421, 433, 533 |
| AjiI | CACGTC | 1 cut(s) | 241 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 3 cut(s) | 56, 497, 687 |
| AluI | AGCT | 3 cut(s) | 56, 497, 687 |
| Alw21I | GWGCWC | 1 cut(s) | 808 |
| Alw26I | GTCTC | 3 cut(s) | 101, 301, 504 |
| AlwI | GGATC | 1 cut(s) | 758 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| ApeKI | GCWGC | 4 cut(s) | 142, 687, 748, 883 |
| ApoI | RAATTY | 2 cut(s) | 728, 891 |
| AseI | ATTAAT | 1 cut(s) | 837 |
| AspLEI | GCGC | 5 cut(s) | 124, 166, 259, 539, 853 |
| AspS9I | GGNCC | 1 cut(s) | 287 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| AvaII | GGWCC | 1 cut(s) | 287 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 229, 262 |
| Bbv12I | GWGCWC | 1 cut(s) | 808 |
| BbvI | GCAGC | 4 cut(s) | 129, 674, 760, 870 |
| BccI | CCATC | 1 cut(s) | 892 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BciVI | GTATCC | 1 cut(s) | 614 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcoDI | GTCTC | 3 cut(s) | 101, 301, 504 |
| BfaI | CTAG | 4 cut(s) | 51, 515, 524, 854 |
| BfuI | GTATCC | 1 cut(s) | 614 |
| BisI | GCNGC | 4 cut(s) | 143, 688, 749, 884 |
| BlsI | GCNGC | 4 cut(s) | 144, 689, 750, 885 |
| BmcAI | AGTACT | 1 cut(s) | 180 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 1 cut(s) | 287 |
| BmgBI | CACGTC | 1 cut(s) | 241 |
| BmgT120I | GGNCC | 1 cut(s) | 287 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 2 cut(s) | 268, 760 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| Bpu10I | CCTNAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 1 cut(s) | 610 |
| Bsa29I | ATCGAT | 1 cut(s) | 721 |
| BsaBI | GATNNNNATC | 3 cut(s) | 231, 407, 657 |
| BsaI | GGTCTC | 1 cut(s) | 504 |
| BsaJI | CCNNGG | 2 cut(s) | 299, 398 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 444, 474, 501, 531 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 399, 775 |
| Bse8I | GATNNNNATC | 3 cut(s) | 231, 407, 657 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseCI | ATCGAT | 1 cut(s) | 721 |
| BseDI | CCNNGG | 2 cut(s) | 299, 398 |
| BseJI | GATNNNNATC | 3 cut(s) | 231, 407, 657 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 399, 775 |
| BseXI | GCAGC | 4 cut(s) | 129, 674, 760, 870 |
| Bsh1236I | CGCG | 1 cut(s) | 539 |
| Bsh1285I | CGRYCG | 1 cut(s) | 467 |
| BshVI | ATCGAT | 1 cut(s) | 721 |
| BsiEI | CGRYCG | 1 cut(s) | 467 |
| BsiHKAI | GWGCWC | 1 cut(s) | 808 |
| BslFI | GGGAC | 1 cut(s) | 607 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 399, 775 |
| BsmAI | GTCTC | 3 cut(s) | 101, 301, 504 |
| BsmFI | GGGAC | 1 cut(s) | 607 |
| Bso31I | GGTCTC | 1 cut(s) | 504 |
| Bsp1286I | GDGCHC | 1 cut(s) | 808 |
| Bsp143I | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| Bsp19I | CCATGG | 1 cut(s) | 398 |
| BspACI | CCGC | 3 cut(s) | 463, 587, 644 |
| BspDI | ATCGAT | 1 cut(s) | 721 |
| BspFNI | CGCG | 1 cut(s) | 539 |
| BspPI | GGATC | 1 cut(s) | 758 |
| BspTNI | GGTCTC | 1 cut(s) | 504 |
| BsrBI | CCGCTC | 1 cut(s) | 587 |
| BssECI | CCNNGG | 2 cut(s) | 299, 398 |
| BssMI | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 2 cut(s) | 300, 326 |
| BstC8I | GCNNGC | 5 cut(s) | 195, 334, 558, 681, 685 |
| BstDEI | CTNAG | 3 cut(s) | 125, 171, 182 |
| BstDSI | CCRYGG | 2 cut(s) | 299, 398 |
| BstFNI | CGCG | 1 cut(s) | 539 |
| BstHHI | GCGC | 5 cut(s) | 124, 166, 259, 539, 853 |
| BstKTI | GATC | 6 cut(s) | 72, 235, 523, 661, 725, 766 |
| BstMAI | GTCTC | 3 cut(s) | 101, 301, 504 |
| BstMBI | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| BstMCI | CGRYCG | 1 cut(s) | 467 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 712 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 560 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstUI | CGCG | 1 cut(s) | 539 |
| BstV1I | GCAGC | 4 cut(s) | 129, 674, 760, 870 |
| Bsu15I | ATCGAT | 1 cut(s) | 721 |
| BsuI | GTATCC | 1 cut(s) | 614 |
| BsuTUI | ATCGAT | 1 cut(s) | 721 |
| BtgI | CCRYGG | 2 cut(s) | 299, 398 |
| BtrI | CACGTC | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 5 cut(s) | 195, 334, 558, 681, 685 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CfoI | GCGC | 5 cut(s) | 124, 166, 259, 539, 853 |
| Cfr13I | GGNCC | 1 cut(s) | 287 |
| ClaI | ATCGAT | 1 cut(s) | 721 |
| CseI | GACGC | 3 cut(s) | 278, 695, 875 |
| CsiI | ACCWGGT | 1 cut(s) | 289 |
| Csp6I | GTAC | 3 cut(s) | 179, 246, 632 |
| CviAII | CATG | 7 cut(s) | 371, 399, 549, 557, 603, 817, 861 |
| CviJI | RGCY | 9 cut(s) | 56, 197, 457, 486, 497, 687, 779, 791, 883 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 197, 457, 486, 497, 687, 779, 791, 883 |
| CviQI | GTAC | 3 cut(s) | 179, 246, 632 |
| DdeI | CTNAG | 3 cut(s) | 125, 171, 182 |
| DpnI | GATC | 6 cut(s) | 71, 234, 522, 660, 724, 765 |
| DpnII | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco31I | GGTCTC | 1 cut(s) | 504 |
| Eco47I | GGWCC | 1 cut(s) | 287 |
| Eco57I | CTGAAG | 2 cut(s) | 813, 862 |
| EcoO109I | RGGNCCY | 1 cut(s) | 287 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 7 cut(s) | 374, 402, 552, 560, 606, 820, 864 |
| FaqI | GGGAC | 1 cut(s) | 607 |
| FatI | CATG | 7 cut(s) | 370, 398, 548, 556, 602, 816, 860 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| Fnu4HI | GCNGC | 4 cut(s) | 143, 688, 749, 884 |
| Fsp4HI | GCNGC | 4 cut(s) | 143, 688, 749, 884 |
| FspBI | CTAG | 4 cut(s) | 51, 515, 524, 854 |
| FspI | TGCGCA | 2 cut(s) | 165, 258 |
| GlaI | GCGC | 5 cut(s) | 123, 165, 258, 538, 852 |
| GluI | GCNGC | 4 cut(s) | 143, 688, 749, 884 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HgaI | GACGC | 3 cut(s) | 278, 695, 875 |
| HhaI | GCGC | 5 cut(s) | 124, 166, 259, 539, 853 |
| Hin1II | CATG | 7 cut(s) | 374, 402, 552, 560, 606, 820, 864 |
| Hin6I | GCGC | 5 cut(s) | 122, 164, 257, 537, 851 |
| HinP1I | GCGC | 5 cut(s) | 122, 164, 257, 537, 851 |
| HincII | GTYRAC | 1 cut(s) | 822 |
| HindII | GTYRAC | 1 cut(s) | 822 |
| HindIII | AAGCTT | 1 cut(s) | 495 |
| HinfI | GANTC | 4 cut(s) | 30, 353, 389, 734 |
| HpaI | GTTAAC | 1 cut(s) | 822 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 2 cut(s) | 296, 822 |
| Hpy188I | TCNGA | 3 cut(s) | 223, 469, 897 |
| Hpy8I | GTNNAC | 2 cut(s) | 296, 822 |
| Hpy99I | CGWCG | 1 cut(s) | 272 |
| HpyAV | CCTTC | 3 cut(s) | 404, 781, 886 |
| HpyCH4III | ACNGT | 2 cut(s) | 300, 326 |
| HpyCH4IV | ACGT | 4 cut(s) | 240, 346, 574, 868 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 145, 332, 560, 679, 748 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 712 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 171, 182 |
| HpySE526I | ACGT | 4 cut(s) | 240, 346, 574, 868 |
| Hsp92II | CATG | 7 cut(s) | 374, 402, 552, 560, 606, 820, 864 |
| HspAI | GCGC | 5 cut(s) | 122, 164, 257, 537, 851 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| KspAI | GTTAAC | 1 cut(s) | 822 |
| Kzo9I | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| LmnI | GCTCC | 1 cut(s) | 811 |
| Lsp1109I | GCAGC | 4 cut(s) | 129, 674, 760, 870 |
| LweI | GCATC | 2 cut(s) | 268, 760 |
| MabI | ACCWGGT | 1 cut(s) | 289 |
| MaeI | CTAG | 4 cut(s) | 51, 515, 524, 854 |
| MaeII | ACGT | 4 cut(s) | 240, 346, 574, 868 |
| MalI | GATC | 6 cut(s) | 71, 234, 522, 660, 724, 765 |
| MbiI | CCGCTC | 1 cut(s) | 587 |
| MboI | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| MboII | GAAGA | 3 cut(s) | 236, 553, 806 |
| MhlI | GDGCHC | 1 cut(s) | 808 |
| MluCI | AATT | 7 cut(s) | 19, 152, 569, 728, 781, 831, 891 |
| MlyI | GAGTC | 2 cut(s) | 383, 743 |
| MmeI | TCCRAC | 1 cut(s) | 447 |
| MnlI | CCTC | 6 cut(s) | 54, 96, 194, 446, 474, 794 |
| MseI | TTAA | 2 cut(s) | 821, 837 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MvnI | CGCG | 1 cut(s) | 539 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 712 |
| NcoI | CCATGG | 1 cut(s) | 398 |
| NdeII | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| NlaIII | CATG | 7 cut(s) | 374, 402, 552, 560, 606, 820, 864 |
| NsbI | TGCGCA | 2 cut(s) | 165, 258 |
| NspI | RCATGY | 1 cut(s) | 560 |
| PaeI | GCATGC | 1 cut(s) | 560 |
| PfeI | GAWTC | 2 cut(s) | 30, 353 |
| PkrI | GCNGC | 4 cut(s) | 144, 689, 750, 885 |
| PleI | GAGTC | 2 cut(s) | 383, 742 |
| PpsI | GAGTC | 2 cut(s) | 383, 742 |
| PpuMI | RGGWCCY | 1 cut(s) | 287 |
| PshBI | ATTAAT | 1 cut(s) | 837 |
| Psp5II | RGGWCCY | 1 cut(s) | 287 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspPI | GGNCC | 1 cut(s) | 287 |
| PspPPI | RGGWCCY | 1 cut(s) | 287 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| RsaI | GTAC | 3 cut(s) | 180, 247, 633 |
| RsaNI | GTAC | 3 cut(s) | 179, 246, 632 |
| SaqAI | TTAA | 2 cut(s) | 821, 837 |
| SatI | GCNGC | 4 cut(s) | 143, 688, 749, 884 |
| Sau3AI | GATC | 6 cut(s) | 69, 232, 520, 658, 722, 763 |
| Sau96I | GGNCC | 1 cut(s) | 287 |
| ScaI | AGTACT | 1 cut(s) | 180 |
| SchI | GAGTC | 2 cut(s) | 383, 743 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 808 |
| SexAI | ACCWGGT | 1 cut(s) | 289 |
| SfaNI | GCATC | 2 cut(s) | 268, 760 |
| SinI | GGWCC | 1 cut(s) | 287 |
| SmlI | CTYRAG | 1 cut(s) | 625 |
| SmoI | CTYRAG | 1 cut(s) | 625 |
| SphI | GCATGC | 1 cut(s) | 560 |
| Sse9I | AATT | 7 cut(s) | 19, 152, 569, 728, 781, 831, 891 |
| SsiI | CCGC | 3 cut(s) | 463, 587, 644 |
| SspMI | CTAG | 4 cut(s) | 51, 515, 524, 854 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 2 cut(s) | 300, 326 |
| TaiI | ACGT | 4 cut(s) | 243, 349, 577, 871 |
| TaqI | TCGA | 2 cut(s) | 267, 721 |
| TasI | AATT | 7 cut(s) | 19, 152, 569, 728, 781, 831, 891 |
| TatI | WGTACW | 1 cut(s) | 178 |
| TfiI | GAWTC | 2 cut(s) | 30, 353 |
| Tru1I | TTAA | 2 cut(s) | 821, 837 |
| Tru9I | TTAA | 2 cut(s) | 821, 837 |
| TscAI | CASTG | 1 cut(s) | 124 |
| TseI | GCWGC | 4 cut(s) | 142, 687, 748, 883 |
| TspDTI | ATGAA | 2 cut(s) | 357, 805 |
| TspGWI | ACGGA | 2 cut(s) | 233, 479 |
| TspRI | CASTG | 1 cut(s) | 124 |
| VpaK11BI | GGWCC | 1 cut(s) | 287 |
| VspI | ATTAAT | 1 cut(s) | 837 |
| XapI | RAATTY | 2 cut(s) | 728, 891 |
| XceI | RCATGY | 1 cut(s) | 560 |
| XspI | CTAG | 4 cut(s) | 51, 515, 524, 854 |
| ZrmI | AGTACT | 1 cut(s) | 180 |