ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 229 |
| Acc36I | ACCTGC | 1 cut(s) | 229 |
| AccIII | TCCGGA | 1 cut(s) | 115 |
| AciI | CCGC | 1 cut(s) | 314 |
| AcsI | RAATTY | 1 cut(s) | 89 |
| AfaI | GTAC | 1 cut(s) | 7 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 151 |
| AflIII | ACRYGT | 1 cut(s) | 264 |
| AgsI | TTSAA | 2 cut(s) | 261, 323 |
| AhlI | ACTAGT | 1 cut(s) | 134 |
| Alw21I | GWGCWC | 1 cut(s) | 364 |
| Aor13HI | TCCGGA | 1 cut(s) | 115 |
| ApeKI | GCWGC | 4 cut(s) | 31, 55, 58, 155 |
| ApoI | RAATTY | 1 cut(s) | 89 |
| AspS9I | GGNCC | 1 cut(s) | 306 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| AvaII | GGWCC | 1 cut(s) | 306 |
| Bbv12I | GWGCWC | 1 cut(s) | 364 |
| BbvI | GCAGC | 4 cut(s) | 43, 67, 70, 167 |
| BccI | CCATC | 2 cut(s) | 221, 226 |
| BcuI | ACTAGT | 1 cut(s) | 134 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BfuAI | ACCTGC | 1 cut(s) | 229 |
| BisI | GCNGC | 5 cut(s) | 32, 56, 59, 156, 315 |
| BlsI | GCNGC | 5 cut(s) | 33, 57, 60, 157, 316 |
| Bme18I | GGWCC | 1 cut(s) | 306 |
| BmgT120I | GGNCC | 1 cut(s) | 306 |
| BmiI | GGNNCC | 1 cut(s) | 308 |
| BpuEI | CTTGAG | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 1 cut(s) | 282 |
| BsaWI | WCCGGW | 1 cut(s) | 115 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 151 |
| Bse3DI | GCAATG | 2 cut(s) | 270, 348 |
| BseAI | TCCGGA | 1 cut(s) | 115 |
| BseDI | CCNNGG | 1 cut(s) | 282 |
| BseGI | GGATG | 3 cut(s) | 226, 237, 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 151 |
| BseMI | GCAATG | 2 cut(s) | 270, 348 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseXI | GCAGC | 4 cut(s) | 43, 67, 70, 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 364 |
| BsiSI | CCGG | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 151 |
| Bsp1286I | GDGCHC | 1 cut(s) | 364 |
| Bsp13I | TCCGGA | 1 cut(s) | 115 |
| Bsp1407I | TGTACA | 1 cut(s) | 5 |
| BspACI | CCGC | 1 cut(s) | 314 |
| BspCNI | CTCAG | 1 cut(s) | 364 |
| BspEI | TCCGGA | 1 cut(s) | 115 |
| BspHI | TCATGA | 1 cut(s) | 96 |
| BspLI | GGNNCC | 1 cut(s) | 308 |
| BspMI | ACCTGC | 1 cut(s) | 229 |
| BsrDI | GCAATG | 2 cut(s) | 270, 348 |
| BsrGI | TGTACA | 1 cut(s) | 5 |
| BssECI | CCNNGG | 1 cut(s) | 282 |
| BssT1I | CCWWGG | 1 cut(s) | 282 |
| Bst6I | CTCTTC | 2 cut(s) | 161, 372 |
| BstAUI | TGTACA | 1 cut(s) | 5 |
| BstDEI | CTNAG | 2 cut(s) | 184, 372 |
| BstEII | GGTNACC | 1 cut(s) | 122 |
| BstF5I | GGATG | 3 cut(s) | 226, 237, 292 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 23 |
| BstNSI | RCATGY | 1 cut(s) | 268 |
| BstPI | GGTNACC | 1 cut(s) | 122 |
| BstV1I | GCAGC | 4 cut(s) | 43, 67, 70, 167 |
| BtsCI | GGATG | 3 cut(s) | 226, 237, 292 |
| BveI | ACCTGC | 1 cut(s) | 229 |
| CciI | TCATGA | 1 cut(s) | 96 |
| Cfr13I | GGNCC | 1 cut(s) | 306 |
| Csp6I | GTAC | 1 cut(s) | 6 |
| CviAII | CATG | 3 cut(s) | 27, 97, 265 |
| CviJI | RGCY | 1 cut(s) | 189 |
| CviKI_1 | RGCY | 1 cut(s) | 189 |
| CviQI | GTAC | 1 cut(s) | 6 |
| DdeI | CTNAG | 2 cut(s) | 184, 372 |
| Eam1104I | CTCTTC | 2 cut(s) | 161, 372 |
| EarI | CTCTTC | 2 cut(s) | 161, 372 |
| Eco130I | CCWWGG | 1 cut(s) | 282 |
| Eco47I | GGWCC | 1 cut(s) | 306 |
| Eco91I | GGTNACC | 1 cut(s) | 122 |
| EcoO109I | RGGNCCY | 1 cut(s) | 306 |
| EcoO65I | GGTNACC | 1 cut(s) | 122 |
| EcoT14I | CCWWGG | 1 cut(s) | 282 |
| ErhI | CCWWGG | 1 cut(s) | 282 |
| FaeI | CATG | 3 cut(s) | 30, 100, 268 |
| FaiI | YATR | 5 cut(s) | 28, 36, 98, 147, 266 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 33 |
| FatI | CATG | 3 cut(s) | 26, 96, 264 |
| Fnu4HI | GCNGC | 5 cut(s) | 32, 56, 59, 156, 315 |
| FokI | GGATG | 3 cut(s) | 233, 244, 299 |
| Fsp4HI | GCNGC | 5 cut(s) | 32, 56, 59, 156, 315 |
| FspBI | CTAG | 1 cut(s) | 135 |
| GluI | GCNGC | 5 cut(s) | 32, 56, 59, 156, 315 |
| HapII | CCGG | 1 cut(s) | 116 |
| Hin1II | CATG | 3 cut(s) | 30, 100, 268 |
| HinfI | GANTC | 2 cut(s) | 197, 346 |
| HpaII | CCGG | 1 cut(s) | 116 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 3 cut(s) | 77, 202, 373 |
| Hpy188III | TCNNGA | 2 cut(s) | 97, 116 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 1 cut(s) | 341 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 23 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 372 |
| Hsp92II | CATG | 3 cut(s) | 30, 100, 268 |
| Kpn2I | TCCGGA | 1 cut(s) | 115 |
| LmnI | GCTCC | 1 cut(s) | 235 |
| LpnPI | CCDG | 2 cut(s) | 129, 224 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 67, 70, 167 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 122, 244 |
| MboII | GAAGA | 2 cut(s) | 178, 389 |
| MfeI | CAATTG | 1 cut(s) | 318 |
| MhlI | GDGCHC | 1 cut(s) | 364 |
| MluCI | AATT | 2 cut(s) | 89, 318 |
| MroI | TCCGGA | 1 cut(s) | 115 |
| MseI | TTAA | 1 cut(s) | 110 |
| MspI | CCGG | 1 cut(s) | 116 |
| MunI | CAATTG | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 23 |
| NlaIII | CATG | 3 cut(s) | 30, 100, 268 |
| NlaIV | GGNNCC | 1 cut(s) | 308 |
| NmuCI | GTSAC | 1 cut(s) | 122 |
| NspI | RCATGY | 1 cut(s) | 268 |
| PagI | TCATGA | 1 cut(s) | 96 |
| PaqCI | CACCTGC | 1 cut(s) | 229 |
| PciI | ACATGT | 1 cut(s) | 264 |
| PfeI | GAWTC | 2 cut(s) | 197, 346 |
| PkrI | GCNGC | 5 cut(s) | 33, 57, 60, 157, 316 |
| PpuMI | RGGWCCY | 1 cut(s) | 306 |
| PscI | ACATGT | 1 cut(s) | 264 |
| Psp5II | RGGWCCY | 1 cut(s) | 306 |
| PspEI | GGTNACC | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 1 cut(s) | 308 |
| PspPI | GGNCC | 1 cut(s) | 306 |
| PspPPI | RGGWCCY | 1 cut(s) | 306 |
| RsaI | GTAC | 1 cut(s) | 7 |
| RsaNI | GTAC | 1 cut(s) | 6 |
| SaqAI | TTAA | 1 cut(s) | 110 |
| SatI | GCNGC | 5 cut(s) | 32, 56, 59, 156, 315 |
| Sau96I | GGNCC | 1 cut(s) | 306 |
| SduI | GDGCHC | 1 cut(s) | 364 |
| SetI | ASST | 6 cut(s) | 75, 129, 243, 328, 356, 384 |
| SinI | GGWCC | 1 cut(s) | 306 |
| SmlI | CTYRAG | 1 cut(s) | 49 |
| SmoI | CTYRAG | 1 cut(s) | 49 |
| SpeI | ACTAGT | 1 cut(s) | 134 |
| Sse9I | AATT | 2 cut(s) | 89, 318 |
| SsiI | CCGC | 1 cut(s) | 314 |
| SspI | AATATT | 1 cut(s) | 368 |
| SspMI | CTAG | 1 cut(s) | 135 |
| StyI | CCWWGG | 1 cut(s) | 282 |
| TasI | AATT | 2 cut(s) | 89, 318 |
| TatI | WGTACW | 1 cut(s) | 5 |
| TauI | GCSGC | 1 cut(s) | 317 |
| TfiI | GAWTC | 2 cut(s) | 197, 346 |
| Tru1I | TTAA | 1 cut(s) | 110 |
| Tru9I | TTAA | 1 cut(s) | 110 |
| TseFI | GTSAC | 1 cut(s) | 122 |
| TseI | GCWGC | 4 cut(s) | 31, 55, 58, 155 |
| Tsp45I | GTSAC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 4 cut(s) | 113, 117, 259, 359 |
| VpaK11BI | GGWCC | 1 cut(s) | 306 |
| XapI | RAATTY | 1 cut(s) | 89 |
| XceI | RCATGY | 1 cut(s) | 268 |
| XspI | CTAG | 1 cut(s) | 135 |