Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 342 |
| Acc36I | ACCTGC | 1 cut(s) | 861 |
| AccBSI | CCGCTC | 1 cut(s) | 662 |
| AccII | CGCG | 1 cut(s) | 112 |
| AciI | CCGC | 1 cut(s) | 662 |
| AclWI | GGATC | 4 cut(s) | 90, 155, 249, 713 |
| AcoI | YGGCCR | 1 cut(s) | 63 |
| AcsI | RAATTY | 2 cut(s) | 846, 928 |
| AcuI | CTGAAG | 2 cut(s) | 147, 768 |
| AfeI | AGCGCT | 1 cut(s) | 318 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 730 |
| AgsI | TTSAA | 4 cut(s) | 313, 608, 835, 845 |
| AjnI | CCWGG | 3 cut(s) | 381, 466, 815 |
| AluBI | AGCT | 6 cut(s) | 48, 172, 233, 525, 572, 838 |
| AluI | AGCT | 6 cut(s) | 48, 172, 233, 525, 572, 838 |
| Alw21I | GWGCWC | 2 cut(s) | 763, 808 |
| Alw26I | GTCTC | 3 cut(s) | 278, 478, 579 |
| AlwI | GGATC | 4 cut(s) | 90, 155, 249, 713 |
| Aor51HI | AGCGCT | 1 cut(s) | 318 |
| AoxI | GGCC | 2 cut(s) | 33, 63 |
| ApeKI | GCWGC | 4 cut(s) | 155, 319, 540, 838 |
| ApoI | RAATTY | 2 cut(s) | 846, 928 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 125, 157 |
| AseI | ATTAAT | 1 cut(s) | 792 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 4 cut(s) | 301, 319, 343, 614 |
| AspS9I | GGNCC | 3 cut(s) | 4, 33, 464 |
| AsuHPI | GGTGA | 2 cut(s) | 401, 482 |
| AsuII | TTCGAA | 1 cut(s) | 131 |
| AvaII | GGWCC | 2 cut(s) | 4, 464 |
| BbsI | GAAGAC | 1 cut(s) | 140 |
| Bbv12I | GWGCWC | 2 cut(s) | 763, 808 |
| BbvI | GCAGC | 4 cut(s) | 142, 306, 527, 825 |
| BccI | CCATC | 2 cut(s) | 847, 901 |
| BceAI | ACGGC | 2 cut(s) | 78, 517 |
| BciT130I | CCWGG | 3 cut(s) | 383, 468, 817 |
| BciVI | GTATCC | 1 cut(s) | 689 |
| BclI | TGATCA | 1 cut(s) | 246 |
| BcoDI | GTCTC | 3 cut(s) | 278, 478, 579 |
| BfaI | CTAG | 3 cut(s) | 228, 590, 599 |
| BfoI | RGCGCY | 1 cut(s) | 320 |
| BfuAI | ACCTGC | 1 cut(s) | 861 |
| BfuI | GTATCC | 1 cut(s) | 689 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 549 |
| BisI | GCNGC | 4 cut(s) | 156, 320, 541, 839 |
| BlsI | GCNGC | 4 cut(s) | 157, 321, 542, 840 |
| Bme1390I | CCNGG | 3 cut(s) | 383, 468, 817 |
| Bme18I | GGWCC | 2 cut(s) | 4, 464 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 33, 464 |
| BmiI | GGNNCC | 1 cut(s) | 34 |
| BmrFI | CCNGG | 3 cut(s) | 383, 468, 817 |
| BmrI | ACTGGG | 1 cut(s) | 39 |
| BmsI | GCATC | 3 cut(s) | 436, 445, 715 |
| BmuI | ACTGGG | 1 cut(s) | 39 |
| BpiI | GAAGAC | 1 cut(s) | 140 |
| Bpu10I | CCTNAGC | 1 cut(s) | 302 |
| Bpu14I | TTCGAA | 1 cut(s) | 131 |
| BpuEI | CTTGAG | 1 cut(s) | 685 |
| Bsa29I | ATCGAT | 1 cut(s) | 444 |
| BsaBI | GATNNNNATC | 1 cut(s) | 717 |
| BsaI | GGTCTC | 1 cut(s) | 579 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 576, 606 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 730 |
| Bse118I | RCCGGY | 1 cut(s) | 65 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| Bse8I | GATNNNNATC | 1 cut(s) | 717 |
| BseBI | CCWGG | 3 cut(s) | 383, 468, 817 |
| BseCI | ATCGAT | 1 cut(s) | 444 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseGI | GGATG | 1 cut(s) | 806 |
| BseJI | GATNNNNATC | 1 cut(s) | 717 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 730 |
| BseMII | CTCAG | 1 cut(s) | 350 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BseRI | GAGGAG | 1 cut(s) | 40 |
| BseX3I | CGGCCG | 1 cut(s) | 63 |
| BseXI | GCAGC | 4 cut(s) | 142, 306, 527, 825 |
| BseYI | CCCAGC | 1 cut(s) | 525 |
| Bsh1236I | CGCG | 1 cut(s) | 112 |
| Bsh1285I | CGRYCG | 1 cut(s) | 66 |
| BshFI | GGCC | 2 cut(s) | 35, 65 |
| BshVI | ATCGAT | 1 cut(s) | 444 |
| BsiEI | CGRYCG | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 2 cut(s) | 763, 808 |
| BsiSI | CCGG | 1 cut(s) | 66 |
| BslFI | GGGAC | 1 cut(s) | 682 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 730 |
| BsmAI | GTCTC | 3 cut(s) | 278, 478, 579 |
| BsmFI | GGGAC | 1 cut(s) | 682 |
| BsmI | GAATGC | 1 cut(s) | 637 |
| BsnI | GGCC | 2 cut(s) | 35, 65 |
| Bso31I | GGTCTC | 1 cut(s) | 579 |
| Bsp119I | TTCGAA | 1 cut(s) | 131 |
| Bsp1286I | GDGCHC | 2 cut(s) | 763, 808 |
| Bsp143I | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| Bsp68I | TCGCGA | 1 cut(s) | 112 |
| BspACI | CCGC | 1 cut(s) | 662 |
| BspANI | GGCC | 2 cut(s) | 35, 65 |
| BspCNI | CTCAG | 1 cut(s) | 351 |
| BspDI | ATCGAT | 1 cut(s) | 444 |
| BspFNI | CGCG | 1 cut(s) | 112 |
| BspHI | TCATGA | 1 cut(s) | 885 |
| BspLI | GGNNCC | 1 cut(s) | 34 |
| BspMI | ACCTGC | 1 cut(s) | 861 |
| BspPI | GGATC | 4 cut(s) | 90, 155, 249, 713 |
| BspT104I | TTCGAA | 1 cut(s) | 131 |
| BspTNI | GGTCTC | 1 cut(s) | 579 |
| BsrBI | CCGCTC | 1 cut(s) | 662 |
| BsrFI | RCCGGY | 1 cut(s) | 65 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssAI | RCCGGY | 1 cut(s) | 65 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| BssT1I | CCWWGG | 1 cut(s) | 96 |
| Bst2UI | CCWGG | 3 cut(s) | 383, 468, 817 |
| Bst4CI | ACNGT | 2 cut(s) | 477, 517 |
| BstBI | TTCGAA | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 2 cut(s) | 67, 511 |
| BstDEI | CTNAG | 3 cut(s) | 302, 348, 359 |
| BstF5I | GGATG | 1 cut(s) | 806 |
| BstFNI | CGCG | 1 cut(s) | 112 |
| BstH2I | RGCGCY | 1 cut(s) | 320 |
| BstHHI | GCGC | 4 cut(s) | 301, 319, 343, 614 |
| BstKTI | GATC | 6 cut(s) | 85, 150, 244, 249, 598, 721 |
| BstMAI | GTCTC | 3 cut(s) | 278, 478, 579 |
| BstMBI | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| BstMCI | CGRYCG | 1 cut(s) | 66 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 501, 510, 531, 540, 549, 558 |
| BstNI | CCWGG | 3 cut(s) | 383, 468, 817 |
| BstSCI | CCNGG | 3 cut(s) | 381, 466, 815 |
| BstUI | CGCG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 4 cut(s) | 142, 306, 527, 825 |
| BstV2I | GAAGAC | 1 cut(s) | 140 |
| BstX2I | RGATCY | 3 cut(s) | 82, 147, 241 |
| BstYI | RGATCY | 3 cut(s) | 82, 147, 241 |
| BstZI | CGGCCG | 1 cut(s) | 63 |
| Bsu15I | ATCGAT | 1 cut(s) | 444 |
| BsuI | GTATCC | 1 cut(s) | 689 |
| BsuRI | GGCC | 2 cut(s) | 35, 65 |
| BsuTUI | ATCGAT | 1 cut(s) | 444 |
| BtsCI | GGATG | 1 cut(s) | 806 |
| BtsIMutI | CAGTG | 3 cut(s) | 171, 301, 482 |
| BtuMI | TCGCGA | 1 cut(s) | 112 |
| BveI | ACCTGC | 1 cut(s) | 861 |
| Cac8I | GCNNGC | 2 cut(s) | 67, 511 |
| CciI | TCATGA | 1 cut(s) | 885 |
| CfoI | GCGC | 4 cut(s) | 301, 319, 343, 614 |
| Cfr10I | RCCGGY | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 33, 464 |
| ClaI | ATCGAT | 1 cut(s) | 444 |
| CsiI | ACCWGGT | 1 cut(s) | 466 |
| CviAII | CATG | 4 cut(s) | 624, 678, 772, 886 |
| DdeI | CTNAG | 3 cut(s) | 302, 348, 359 |
| DpnI | GATC | 6 cut(s) | 84, 149, 243, 248, 597, 720 |
| DpnII | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| EaeI | YGGCCR | 1 cut(s) | 63 |
| EagI | CGGCCG | 1 cut(s) | 63 |
| EclXI | CGGCCG | 1 cut(s) | 63 |
| Eco130I | CCWWGG | 1 cut(s) | 96 |
| Eco31I | GGTCTC | 1 cut(s) | 579 |
| Eco47I | GGWCC | 2 cut(s) | 4, 464 |
| Eco47III | AGCGCT | 1 cut(s) | 318 |
| Eco52I | CGGCCG | 1 cut(s) | 63 |
| Eco57I | CTGAAG | 2 cut(s) | 147, 768 |
| EcoO109I | RGGNCCY | 2 cut(s) | 33, 464 |
| EcoRII | CCWGG | 3 cut(s) | 381, 466, 815 |
| EcoT14I | CCWWGG | 1 cut(s) | 96 |
| ErhI | CCWWGG | 1 cut(s) | 96 |
| FaeI | CATG | 4 cut(s) | 627, 681, 775, 889 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 545, 577 |
| FaqI | GGGAC | 1 cut(s) | 682 |
| FatI | CATG | 4 cut(s) | 623, 677, 771, 885 |
| FbaI | TGATCA | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 4 cut(s) | 156, 320, 541, 839 |
| FokI | GGATG | 1 cut(s) | 813 |
| Fsp4HI | GCNGC | 4 cut(s) | 156, 320, 541, 839 |
| FspBI | CTAG | 3 cut(s) | 228, 590, 599 |
| FspI | TGCGCA | 1 cut(s) | 342 |
| GlaI | GCGC | 4 cut(s) | 300, 318, 342, 613 |
| GluI | GCNGC | 4 cut(s) | 156, 320, 541, 839 |
| GsaI | CCCAGC | 1 cut(s) | 529 |
| HaeII | RGCGCY | 1 cut(s) | 320 |
| HaeIII | GGCC | 2 cut(s) | 35, 65 |
| HapII | CCGG | 1 cut(s) | 66 |
| HhaI | GCGC | 4 cut(s) | 301, 319, 343, 614 |
| Hin1II | CATG | 4 cut(s) | 627, 681, 775, 889 |
| Hin6I | GCGC | 4 cut(s) | 299, 317, 341, 612 |
| HinP1I | GCGC | 4 cut(s) | 299, 317, 341, 612 |
| HincII | GTYRAC | 1 cut(s) | 777 |
| HindII | GTYRAC | 1 cut(s) | 777 |
| HindIII | AAGCTT | 1 cut(s) | 570 |
| HinfI | GANTC | 2 cut(s) | 207, 862 |
| HpaI | GTTAAC | 1 cut(s) | 777 |
| HpaII | CCGG | 1 cut(s) | 66 |
| HphI | GGTGA | 2 cut(s) | 401, 482 |
| Hpy166II | GTNNAC | 4 cut(s) | 27, 409, 473, 777 |
| Hpy188I | TCNGA | 3 cut(s) | 246, 400, 852 |
| Hpy188III | TCNNGA | 6 cut(s) | 80, 111, 566, 710, 809, 886 |
| Hpy8I | GTNNAC | 4 cut(s) | 27, 409, 473, 777 |
| HpyAV | CCTTC | 3 cut(s) | 171, 422, 736 |
| HpyCH4III | ACNGT | 2 cut(s) | 477, 517 |
| HpyCH4IV | ACGT | 2 cut(s) | 417, 649 |
| HpyCH4V | TGCA | 6 cut(s) | 322, 436, 449, 509, 635, 946 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 501, 510, 531, 540, 549, 558 |
| HpyF3I | CTNAG | 3 cut(s) | 302, 348, 359 |
| HpySE526I | ACGT | 2 cut(s) | 417, 649 |
| Hsp92II | CATG | 4 cut(s) | 627, 681, 775, 889 |
| HspAI | GCGC | 4 cut(s) | 299, 317, 341, 612 |
| KroI | GCCGGC | 1 cut(s) | 65 |
| KroNI | GCCGGC | 1 cut(s) | 67 |
| Ksp22I | TGATCA | 1 cut(s) | 246 |
| KspAI | GTTAAC | 1 cut(s) | 777 |
| Kzo9I | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| LmnI | GCTCC | 3 cut(s) | 53, 163, 766 |
| Lsp1109I | GCAGC | 4 cut(s) | 142, 306, 527, 825 |
| LweI | GCATC | 3 cut(s) | 436, 445, 715 |
| MabI | ACCWGGT | 1 cut(s) | 466 |
| MaeI | CTAG | 3 cut(s) | 228, 590, 599 |
| MaeII | ACGT | 2 cut(s) | 417, 649 |
| MalI | GATC | 6 cut(s) | 84, 149, 243, 248, 597, 720 |
| MbiI | CCGCTC | 1 cut(s) | 662 |
| MboI | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| MboII | GAAGA | 4 cut(s) | 145, 413, 761, 934 |
| MflI | RGATCY | 3 cut(s) | 82, 147, 241 |
| MhlI | GDGCHC | 2 cut(s) | 763, 808 |
| MluCI | AATT | 5 cut(s) | 644, 736, 786, 846, 928 |
| MmeI | TCCRAC | 2 cut(s) | 102, 461 |
| MnlI | CCTC | 7 cut(s) | 61, 193, 231, 523, 551, 749, 860 |
| MroNI | GCCGGC | 1 cut(s) | 65 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 4 cut(s) | 56, 176, 776, 792 |
| MslI | CAYNNNNRTG | 1 cut(s) | 444 |
| MspI | CCGG | 1 cut(s) | 66 |
| MspR9I | CCNGG | 3 cut(s) | 383, 468, 817 |
| Mva1269I | GAATGC | 1 cut(s) | 637 |
| MvaI | CCWGG | 3 cut(s) | 383, 468, 817 |
| MvnI | CGCG | 1 cut(s) | 112 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 501, 510, 531, 540, 549, 558 |
| NaeI | GCCGGC | 1 cut(s) | 67 |
| NdeII | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| NgoMIV | GCCGGC | 1 cut(s) | 65 |
| NlaIII | CATG | 4 cut(s) | 627, 681, 775, 889 |
| NlaIV | GGNNCC | 1 cut(s) | 34 |
| NruI | TCGCGA | 1 cut(s) | 112 |
| NsbI | TGCGCA | 1 cut(s) | 342 |
| NspV | TTCGAA | 1 cut(s) | 131 |
| PagI | TCATGA | 1 cut(s) | 885 |
| PctI | GAATGC | 1 cut(s) | 637 |
| PdiI | GCCGGC | 1 cut(s) | 67 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 2 cut(s) | 207, 862 |
| PflFI | GACNNNGTC | 2 cut(s) | 139, 590 |
| PkrI | GCNGC | 4 cut(s) | 157, 321, 542, 840 |
| PpuMI | RGGWCCY | 1 cut(s) | 464 |
| PshBI | ATTAAT | 1 cut(s) | 792 |
| Psp5II | RGGWCCY | 1 cut(s) | 464 |
| Psp6I | CCWGG | 3 cut(s) | 381, 466, 815 |
| PspFI | CCCAGC | 1 cut(s) | 525 |
| PspGI | CCWGG | 3 cut(s) | 381, 466, 815 |
| PspN4I | GGNNCC | 1 cut(s) | 34 |
| PspPI | GGNCC | 3 cut(s) | 4, 33, 464 |
| PspPPI | RGGWCCY | 1 cut(s) | 464 |
| PsuI | RGATCY | 3 cut(s) | 82, 147, 241 |
| PsyI | GACNNNGTC | 2 cut(s) | 139, 590 |
| RruI | TCGCGA | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 1 cut(s) | 444 |
| SaqAI | TTAA | 4 cut(s) | 56, 176, 776, 792 |
| SatI | GCNGC | 4 cut(s) | 156, 320, 541, 839 |
| Sau3AI | GATC | 6 cut(s) | 82, 147, 241, 246, 595, 718 |
| Sau96I | GGNCC | 3 cut(s) | 4, 33, 464 |
| ScrFI | CCNGG | 3 cut(s) | 383, 468, 817 |
| SduI | GDGCHC | 2 cut(s) | 763, 808 |
| SexAI | ACCWGGT | 1 cut(s) | 466 |
| SfaNI | GCATC | 3 cut(s) | 436, 445, 715 |
| SfuI | TTCGAA | 1 cut(s) | 131 |
| SinI | GGWCC | 2 cut(s) | 4, 464 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 444 |
| SmlI | CTYRAG | 1 cut(s) | 700 |
| SmoI | CTYRAG | 1 cut(s) | 700 |
| Sse9I | AATT | 5 cut(s) | 644, 736, 786, 846, 928 |
| SsiI | CCGC | 1 cut(s) | 662 |
| SspI | AATATT | 1 cut(s) | 688 |
| SspMI | CTAG | 3 cut(s) | 228, 590, 599 |
| StyD4I | CCNGG | 3 cut(s) | 381, 466, 815 |
| StyI | CCWWGG | 1 cut(s) | 96 |
| TaaI | ACNGT | 2 cut(s) | 477, 517 |
| TaiI | ACGT | 2 cut(s) | 420, 652 |
| TaqI | TCGA | 5 cut(s) | 41, 131, 444, 594, 865 |
| TasI | AATT | 5 cut(s) | 644, 736, 786, 846, 928 |
| TfiI | GAWTC | 2 cut(s) | 207, 862 |
| Tru1I | TTAA | 4 cut(s) | 56, 176, 776, 792 |
| Tru9I | TTAA | 4 cut(s) | 56, 176, 776, 792 |
| TscAI | CASTG | 3 cut(s) | 171, 301, 482 |
| TseI | GCWGC | 4 cut(s) | 155, 319, 540, 838 |
| TspDTI | ATGAA | 3 cut(s) | 760, 902, 906 |
| TspGWI | ACGGA | 1 cut(s) | 204 |
| TspRI | CASTG | 3 cut(s) | 171, 301, 482 |
| Tth111I | GACNNNGTC | 2 cut(s) | 139, 590 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 464 |
| VspI | ATTAAT | 1 cut(s) | 792 |
| XapI | RAATTY | 2 cut(s) | 846, 928 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 228, 590, 599 |