ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EF-hand_7 | PF13499 | 11 - 73 | 2.6e-19 | EF-hand domain pair |
| EF-hand_1 | PF00036 | 13 - 41 | 1.3e-08 | EF hand domain |
| EF-hand_6 | PF13405 | 13 - 42 | 8.5e-09 | EF-hand domain |
| EF-hand_5 | PF13202 | 14 - 36 | 2.1e-06 | EF hand |
| EF-hand_8 | PF13833 | 32 - 75 | 4.3e-08 | EF-hand domain pair |
| EF-hand_1 | PF00036 | 49 - 74 | 3.9e-08 | EF hand domain |
| EF-hand_7 | PF13499 | 80 - 143 | 4.7e-16 | EF-hand domain pair |
| EF-hand_1 | PF00036 | 81 - 109 | 3.5e-07 | EF hand domain |
| EF-hand_6 | PF13405 | 81 - 110 | 4.5e-08 | EF-hand domain |
| EF-hand_5 | PF13202 | 82 - 105 | 4.3e-06 | EF hand |
| EF-hand_1 | PF00036 | 118 - 144 | 1.5e-07 | EF hand domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 140 |
| AccI | GTMKAC | 1 cut(s) | 375 |
| AccII | CGCG | 5 cut(s) | 31, 249, 254, 296, 356 |
| AciI | CCGC | 7 cut(s) | 15, 31, 190, 228, 247, 286, 294 |
| AclWI | GGATC | 5 cut(s) | 31, 92, 225, 238, 249 |
| AcoI | YGGCCR | 4 cut(s) | 162, 187, 283, 391 |
| AcsI | RAATTY | 1 cut(s) | 410 |
| AcuI | CTGAAG | 1 cut(s) | 62 |
| AcyI | GRCGYC | 2 cut(s) | 137, 378 |
| AflIII | ACRYGT | 1 cut(s) | 252 |
| AgsI | TTSAA | 3 cut(s) | 10, 55, 415 |
| AjiI | CACGTC | 1 cut(s) | 397 |
| AluBI | AGCT | 3 cut(s) | 40, 100, 121 |
| AluI | AGCT | 3 cut(s) | 40, 100, 121 |
| Alw21I | GWGCWC | 3 cut(s) | 102, 123, 341 |
| AlwI | GGATC | 5 cut(s) | 31, 92, 225, 238, 249 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 87 |
| AoxI | GGCC | 5 cut(s) | 162, 187, 283, 328, 391 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| ApoI | RAATTY | 1 cut(s) | 410 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 50 |
| AspLEI | GCGC | 2 cut(s) | 20, 356 |
| AspS9I | GGNCC | 1 cut(s) | 328 |
| AsuC2I | CCSGG | 1 cut(s) | 104 |
| BalI | TGGCCA | 1 cut(s) | 393 |
| BamHI | GGATCC | 1 cut(s) | 230 |
| BanII | GRGCYC | 2 cut(s) | 102, 123 |
| BauI | CACGAG | 1 cut(s) | 308 |
| Bbv12I | GWGCWC | 3 cut(s) | 102, 123, 341 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BccI | CCATC | 1 cut(s) | 383 |
| BceAI | ACGGC | 7 cut(s) | 88, 94, 196, 202, 241, 298, 400 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 181, 215, 286, 320 |
| BcnI | CCSGG | 1 cut(s) | 104 |
| BfoI | RGCGCY | 1 cut(s) | 21 |
| BglII | AGATCT | 2 cut(s) | 48, 108 |
| BisI | GCNGC | 4 cut(s) | 16, 91, 190, 286 |
| BlsI | GCNGC | 4 cut(s) | 17, 92, 191, 287 |
| Bme1390I | CCNGG | 1 cut(s) | 104 |
| BmgBI | CACGTC | 1 cut(s) | 397 |
| BmgT120I | GGNCC | 1 cut(s) | 328 |
| BmiI | GGNNCC | 3 cut(s) | 127, 232, 370 |
| BmrFI | CCNGG | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 297 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| BpuEI | CTTGAG | 2 cut(s) | 302, 329 |
| BpuMI | CCSGG | 1 cut(s) | 104 |
| BsaHI | GRCGYC | 2 cut(s) | 137, 378 |
| BsaJI | CCNNGG | 2 cut(s) | 213, 237 |
| BseDI | CCNNGG | 2 cut(s) | 213, 237 |
| BseRI | GAGGAG | 2 cut(s) | 50, 158 |
| BseX3I | CGGCCG | 2 cut(s) | 187, 283 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BsgI | GTGCAG | 1 cut(s) | 290 |
| Bsh1236I | CGCG | 5 cut(s) | 31, 249, 254, 296, 356 |
| Bsh1285I | CGRYCG | 2 cut(s) | 190, 286 |
| BshFI | GGCC | 5 cut(s) | 164, 189, 285, 330, 393 |
| BsiEI | CGRYCG | 2 cut(s) | 190, 286 |
| BsiHKAI | GWGCWC | 3 cut(s) | 102, 123, 341 |
| BsiSI | CCGG | 1 cut(s) | 103 |
| BsnI | GGCC | 5 cut(s) | 164, 189, 285, 330, 393 |
| Bsp1286I | GDGCHC | 3 cut(s) | 102, 123, 341 |
| Bsp143I | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| BspACI | CCGC | 7 cut(s) | 15, 31, 190, 228, 247, 286, 294 |
| BspANI | GGCC | 5 cut(s) | 164, 189, 285, 330, 393 |
| BspFNI | CGCG | 5 cut(s) | 31, 249, 254, 296, 356 |
| BspLI | GGNNCC | 3 cut(s) | 127, 232, 370 |
| BspPI | GGATC | 5 cut(s) | 31, 92, 225, 238, 249 |
| BssECI | CCNNGG | 2 cut(s) | 213, 237 |
| BssMI | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| BssNI | GRCGYC | 2 cut(s) | 137, 378 |
| BssSI | CACGAG | 1 cut(s) | 308 |
| BssT1I | CCWWGG | 1 cut(s) | 237 |
| Bst2BI | CACGAG | 1 cut(s) | 308 |
| Bst4CI | ACNGT | 1 cut(s) | 435 |
| BstACI | GRCGYC | 2 cut(s) | 137, 378 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 87 |
| BstC8I | GCNNGC | 1 cut(s) | 341 |
| BstFNI | CGCG | 5 cut(s) | 31, 249, 254, 296, 356 |
| BstH2I | RGCGCY | 1 cut(s) | 21 |
| BstHHI | GCGC | 2 cut(s) | 20, 356 |
| BstKTI | GATC | 9 cut(s) | 26, 51, 87, 111, 199, 233, 244, 262, 366 |
| BstMBI | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| BstMCI | CGRYCG | 2 cut(s) | 190, 286 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 37, 87, 189, 336 |
| BstSCI | CCNGG | 1 cut(s) | 102 |
| BstUI | CGCG | 5 cut(s) | 31, 249, 254, 296, 356 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstX2I | RGATCY | 6 cut(s) | 23, 48, 84, 108, 230, 241 |
| BstYI | RGATCY | 6 cut(s) | 23, 48, 84, 108, 230, 241 |
| BstZI | CGGCCG | 2 cut(s) | 187, 283 |
| BsuRI | GGCC | 5 cut(s) | 164, 189, 285, 330, 393 |
| BtgZI | GCGATG | 1 cut(s) | 402 |
| BtrI | CACGTC | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 1 cut(s) | 341 |
| CaiI | CAGNNNCTG | 1 cut(s) | 87 |
| CfoI | GCGC | 2 cut(s) | 20, 356 |
| Cfr13I | GGNCC | 1 cut(s) | 328 |
| CseI | GACGC | 2 cut(s) | 260, 386 |
| DpnI | GATC | 9 cut(s) | 25, 50, 86, 110, 198, 232, 243, 261, 365 |
| DpnII | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| EaeI | YGGCCR | 4 cut(s) | 162, 187, 283, 391 |
| EagI | CGGCCG | 2 cut(s) | 187, 283 |
| EciI | GGCGGA | 1 cut(s) | 243 |
| Ecl136II | GAGCTC | 2 cut(s) | 100, 121 |
| EclXI | CGGCCG | 2 cut(s) | 187, 283 |
| Eco130I | CCWWGG | 1 cut(s) | 237 |
| Eco24I | GRGCYC | 2 cut(s) | 102, 123 |
| Eco52I | CGGCCG | 2 cut(s) | 187, 283 |
| Eco53kI | GAGCTC | 2 cut(s) | 100, 121 |
| Eco57I | CTGAAG | 1 cut(s) | 62 |
| EcoICRI | GAGCTC | 2 cut(s) | 100, 121 |
| EcoRI | GAATTC | 1 cut(s) | 410 |
| EcoT14I | CCWWGG | 1 cut(s) | 237 |
| EcoT38I | GRGCYC | 2 cut(s) | 102, 123 |
| ErhI | CCWWGG | 1 cut(s) | 237 |
| FaiI | YATR | 1 cut(s) | 158 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 35, 67 |
| FauI | CCCGC | 1 cut(s) | 24 |
| FblI | GTMKAC | 1 cut(s) | 375 |
| Fnu4HI | GCNGC | 4 cut(s) | 16, 91, 190, 286 |
| FriOI | GRGCYC | 2 cut(s) | 102, 123 |
| Fsp4HI | GCNGC | 4 cut(s) | 16, 91, 190, 286 |
| GlaI | GCGC | 2 cut(s) | 19, 355 |
| GluI | GCNGC | 4 cut(s) | 16, 91, 190, 286 |
| HaeII | RGCGCY | 1 cut(s) | 21 |
| HaeIII | GGCC | 5 cut(s) | 164, 189, 285, 330, 393 |
| HapII | CCGG | 1 cut(s) | 103 |
| HgaI | GACGC | 2 cut(s) | 260, 386 |
| HhaI | GCGC | 2 cut(s) | 20, 356 |
| Hin1I | GRCGYC | 2 cut(s) | 137, 378 |
| Hin6I | GCGC | 2 cut(s) | 18, 354 |
| HinP1I | GCGC | 2 cut(s) | 18, 354 |
| HincII | GTYRAC | 2 cut(s) | 376, 400 |
| HindII | GTYRAC | 2 cut(s) | 376, 400 |
| HpaII | CCGG | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 2 cut(s) | 376, 400 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 142 |
| Hpy188III | TCNNGA | 3 cut(s) | 151, 200, 415 |
| Hpy8I | GTNNAC | 2 cut(s) | 376, 400 |
| HpyAV | CCTTC | 2 cut(s) | 4, 292 |
| HpyCH4III | ACNGT | 1 cut(s) | 435 |
| HpyCH4IV | ACGT | 2 cut(s) | 137, 396 |
| HpyCH4V | TGCA | 1 cut(s) | 307 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 37, 87, 189, 336 |
| HpySE526I | ACGT | 2 cut(s) | 137, 396 |
| Hsp92I | GRCGYC | 2 cut(s) | 137, 378 |
| HspAI | GCGC | 2 cut(s) | 18, 354 |
| Kzo9I | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| LmnI | GCTCC | 4 cut(s) | 37, 105, 131, 374 |
| LpnPI | CCDG | 4 cut(s) | 6, 67, 116, 344 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| LweI | GCATC | 1 cut(s) | 297 |
| MaeII | ACGT | 2 cut(s) | 137, 396 |
| MalI | GATC | 9 cut(s) | 25, 50, 86, 110, 198, 232, 243, 261, 365 |
| MboI | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| MboII | GAAGA | 7 cut(s) | 18, 43, 55, 58, 103, 370, 430 |
| MflI | RGATCY | 6 cut(s) | 23, 48, 84, 108, 230, 241 |
| MhlI | GDGCHC | 3 cut(s) | 102, 123, 341 |
| MlsI | TGGCCA | 1 cut(s) | 393 |
| MluCI | AATT | 1 cut(s) | 410 |
| MluI | ACGCGT | 1 cut(s) | 252 |
| MluNI | TGGCCA | 1 cut(s) | 393 |
| MmeI | TCCRAC | 1 cut(s) | 120 |
| MnlI | CCTC | 7 cut(s) | 28, 136, 139, 208, 281, 304, 400 |
| Mox20I | TGGCCA | 1 cut(s) | 393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 50 |
| MscI | TGGCCA | 1 cut(s) | 393 |
| Msp20I | TGGCCA | 1 cut(s) | 393 |
| MspI | CCGG | 1 cut(s) | 103 |
| MspR9I | CCNGG | 1 cut(s) | 104 |
| MvnI | CGCG | 5 cut(s) | 31, 249, 254, 296, 356 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 37, 87, 189, 336 |
| NciI | CCSGG | 1 cut(s) | 104 |
| NdeII | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| NlaIV | GGNNCC | 3 cut(s) | 127, 232, 370 |
| NmeAIII | GCCGAG | 3 cut(s) | 102, 190, 238 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 210, 372, 384, 402 |
| PdmI | GAANNNNTTC | 1 cut(s) | 50 |
| PfoI | TCCNGGA | 1 cut(s) | 102 |
| PkrI | GCNGC | 4 cut(s) | 17, 92, 191, 287 |
| Psp124BI | GAGCTC | 2 cut(s) | 102, 123 |
| PspN4I | GGNNCC | 3 cut(s) | 127, 232, 370 |
| PspPI | GGNCC | 1 cut(s) | 328 |
| PstNI | CAGNNNCTG | 1 cut(s) | 87 |
| PsuI | RGATCY | 6 cut(s) | 23, 48, 84, 108, 230, 241 |
| SacI | GAGCTC | 2 cut(s) | 102, 123 |
| SalI | GTCGAC | 1 cut(s) | 374 |
| SatI | GCNGC | 4 cut(s) | 16, 91, 190, 286 |
| Sau3AI | GATC | 9 cut(s) | 23, 48, 84, 108, 196, 230, 241, 259, 363 |
| Sau96I | GGNCC | 1 cut(s) | 328 |
| ScrFI | CCNGG | 1 cut(s) | 104 |
| SduI | GDGCHC | 3 cut(s) | 102, 123, 341 |
| SetI | ASST | 9 cut(s) | 42, 102, 123, 140, 150, 219, 273, 315, 399 |
| SfaNI | GCATC | 1 cut(s) | 297 |
| SgrDI | CGTCGACG | 1 cut(s) | 374 |
| SmlI | CTYRAG | 2 cut(s) | 317, 344 |
| SmoI | CTYRAG | 2 cut(s) | 317, 344 |
| Sse9I | AATT | 1 cut(s) | 410 |
| SsiI | CCGC | 7 cut(s) | 15, 31, 190, 228, 247, 286, 294 |
| SstI | GAGCTC | 2 cut(s) | 102, 123 |
| StyD4I | CCNGG | 1 cut(s) | 102 |
| StyI | CCWWGG | 1 cut(s) | 237 |
| TaaI | ACNGT | 1 cut(s) | 435 |
| TaiI | ACGT | 2 cut(s) | 140, 399 |
| TaqI | TCGA | 6 cut(s) | 63, 171, 201, 273, 375, 405 |
| TasI | AATT | 1 cut(s) | 410 |
| TauI | GCSGC | 3 cut(s) | 18, 192, 288 |
| TseI | GCWGC | 1 cut(s) | 90 |
| TspGWI | ACGGA | 2 cut(s) | 104, 361 |
| XapI | RAATTY | 1 cut(s) | 410 |
| XmiI | GTMKAC | 1 cut(s) | 375 |
| XmnI | GAANNNNTTC | 1 cut(s) | 50 |
| ZraI | GACGTC | 1 cut(s) | 138 |