ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 305, 623, 950, 1076 |
| AclWI | GGATC | 4 cut(s) | 44, 78, 777, 910 |
| AfaI | GTAC | 2 cut(s) | 546, 601 |
| AfeI | AGCGCT | 1 cut(s) | 1122 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 160, 541, 592 |
| AflII | CTTAAG | 1 cut(s) | 760 |
| AflIII | ACRYGT | 1 cut(s) | 664 |
| AgsI | TTSAA | 4 cut(s) | 67, 439, 640, 963 |
| AjnI | CCWGG | 3 cut(s) | 295, 362, 695 |
| Alw26I | GTCTC | 1 cut(s) | 958 |
| AlwI | GGATC | 4 cut(s) | 44, 78, 777, 910 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 873 |
| Aor51HI | AGCGCT | 1 cut(s) | 1122 |
| AoxI | GGCC | 2 cut(s) | 532, 991 |
| ApeKI | GCWGC | 5 cut(s) | 589, 802, 917, 985, 1118 |
| AspLEI | GCGC | 2 cut(s) | 1081, 1123 |
| AspS9I | GGNCC | 2 cut(s) | 349, 461 |
| AsuII | TTCGAA | 1 cut(s) | 250 |
| AvaII | GGWCC | 2 cut(s) | 349, 461 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 537, 569 |
| BbvI | GCAGC | 4 cut(s) | 576, 814, 904, 972 |
| BccI | CCATC | 2 cut(s) | 452, 845 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 773, 807, 1055, 1089 |
| BciT130I | CCWGG | 3 cut(s) | 297, 364, 697 |
| BciVI | GTATCC | 1 cut(s) | 830 |
| BclI | TGATCA | 1 cut(s) | 1090 |
| BcoDI | GTCTC | 1 cut(s) | 958 |
| BfaI | CTAG | 5 cut(s) | 392, 530, 540, 878, 911 |
| BfmI | CTRYAG | 3 cut(s) | 590, 945, 1124 |
| BfoI | RGCGCY | 1 cut(s) | 1124 |
| BfrI | CTTAAG | 1 cut(s) | 760 |
| BfuI | GTATCC | 1 cut(s) | 830 |
| BglII | AGATCT | 1 cut(s) | 432 |
| BisI | GCNGC | 6 cut(s) | 590, 803, 918, 986, 1077, 1119 |
| BlsI | GCNGC | 6 cut(s) | 591, 804, 919, 987, 1078, 1120 |
| Bme1390I | CCNGG | 3 cut(s) | 297, 364, 697 |
| Bme18I | GGWCC | 2 cut(s) | 349, 461 |
| BmgT120I | GGNCC | 2 cut(s) | 349, 461 |
| BmiI | GGNNCC | 1 cut(s) | 350 |
| BmrFI | CCNGG | 3 cut(s) | 297, 364, 697 |
| BmrI | ACTGGG | 1 cut(s) | 354 |
| BmsI | GCATC | 1 cut(s) | 628 |
| BmuI | ACTGGG | 1 cut(s) | 354 |
| BpmI | CTGGAG | 1 cut(s) | 599 |
| Bpu14I | TTCGAA | 1 cut(s) | 250 |
| Bsa29I | ATCGAT | 2 cut(s) | 273, 634 |
| BsaAI | YACGTR | 1 cut(s) | 548 |
| BsaBI | GATNNNNATC | 2 cut(s) | 570, 1089 |
| BsaI | GGTCTC | 1 cut(s) | 958 |
| BsaJI | CCNNGG | 2 cut(s) | 363, 404 |
| BsaWI | WCCGGW | 1 cut(s) | 822 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 160, 541, 592 |
| Bse1I | ACTGG | 2 cut(s) | 349, 464 |
| Bse3DI | GCAATG | 3 cut(s) | 49, 222, 314 |
| Bse8I | GATNNNNATC | 2 cut(s) | 570, 1089 |
| BseBI | CCWGG | 3 cut(s) | 297, 364, 697 |
| BseCI | ATCGAT | 2 cut(s) | 273, 634 |
| BseDI | CCNNGG | 2 cut(s) | 363, 404 |
| BseGI | GGATG | 5 cut(s) | 12, 238, 619, 860, 1030 |
| BseJI | GATNNNNATC | 2 cut(s) | 570, 1089 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 160, 541, 592 |
| BseMI | GCAATG | 3 cut(s) | 49, 222, 314 |
| BseMII | CTCAG | 3 cut(s) | 31, 374, 939 |
| BseNI | ACTGG | 2 cut(s) | 349, 464 |
| BseRI | GAGGAG | 2 cut(s) | 945, 1019 |
| BseXI | GCAGC | 4 cut(s) | 576, 814, 904, 972 |
| BseYI | CCCAGC | 1 cut(s) | 560 |
| BsgI | GTGCAG | 1 cut(s) | 707 |
| BshFI | GGCC | 2 cut(s) | 534, 993 |
| BshVI | ATCGAT | 2 cut(s) | 273, 634 |
| BsiSI | CCGG | 1 cut(s) | 823 |
| BslFI | GGGAC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 160, 541, 592 |
| BsmAI | GTCTC | 1 cut(s) | 958 |
| BsmFI | GGGAC | 1 cut(s) | 362 |
| BsnI | GGCC | 2 cut(s) | 534, 993 |
| Bso31I | GGTCTC | 1 cut(s) | 958 |
| Bsp119I | TTCGAA | 1 cut(s) | 250 |
| BspACI | CCGC | 4 cut(s) | 305, 623, 950, 1076 |
| BspANI | GGCC | 2 cut(s) | 534, 993 |
| BspCNI | CTCAG | 3 cut(s) | 30, 375, 938 |
| BspDI | ATCGAT | 2 cut(s) | 273, 634 |
| BspHI | TCATGA | 2 cut(s) | 496, 1093 |
| BspLI | GGNNCC | 1 cut(s) | 350 |
| BspMAI | CTGCAG | 1 cut(s) | 594 |
| BspPI | GGATC | 4 cut(s) | 44, 78, 777, 910 |
| BspT104I | TTCGAA | 1 cut(s) | 250 |
| BspTI | CTTAAG | 1 cut(s) | 760 |
| BspTNI | GGTCTC | 1 cut(s) | 958 |
| BsrDI | GCAATG | 3 cut(s) | 49, 222, 314 |
| BsrI | ACTGG | 2 cut(s) | 349, 464 |
| BssECI | CCNNGG | 2 cut(s) | 363, 404 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 3 cut(s) | 297, 364, 697 |
| Bst4CI | ACNGT | 4 cut(s) | 155, 174, 353, 604 |
| Bst6I | CTCTTC | 2 cut(s) | 265, 885 |
| BstAFI | CTTAAG | 1 cut(s) | 760 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 811 |
| BstBAI | YACGTR | 1 cut(s) | 548 |
| BstBI | TTCGAA | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 1 cut(s) | 594 |
| BstDEI | CTNAG | 3 cut(s) | 17, 383, 925 |
| BstEII | GGTNACC | 1 cut(s) | 164 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 590 |
| BstF5I | GGATG | 5 cut(s) | 12, 238, 619, 860, 1030 |
| BstH2I | RGCGCY | 1 cut(s) | 1124 |
| BstHHI | GCGC | 2 cut(s) | 1081, 1123 |
| BstMAI | GTCTC | 1 cut(s) | 958 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 297, 811 |
| BstNI | CCWGG | 3 cut(s) | 297, 364, 697 |
| BstNSI | RCATGY | 1 cut(s) | 668 |
| BstPI | GGTNACC | 1 cut(s) | 164 |
| BstSCI | CCNGG | 3 cut(s) | 295, 362, 695 |
| BstSFI | CTRYAG | 3 cut(s) | 590, 945, 1124 |
| BstSNI | TACGTA | 1 cut(s) | 548 |
| BstV1I | GCAGC | 4 cut(s) | 576, 814, 904, 972 |
| BstX2I | RGATCY | 3 cut(s) | 36, 70, 432 |
| BstYI | RGATCY | 3 cut(s) | 36, 70, 432 |
| Bsu15I | ATCGAT | 2 cut(s) | 273, 634 |
| BsuI | GTATCC | 1 cut(s) | 830 |
| BsuRI | GGCC | 2 cut(s) | 534, 993 |
| BsuTUI | ATCGAT | 2 cut(s) | 273, 634 |
| BtsCI | GGATG | 5 cut(s) | 12, 238, 619, 860, 1030 |
| BtsI | GCAGTG | 1 cut(s) | 1107 |
| BtsIMutI | CAGTG | 2 cut(s) | 471, 1107 |
| Cac8I | GCNNGC | 1 cut(s) | 594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 873 |
| CciI | TCATGA | 2 cut(s) | 496, 1093 |
| CfoI | GCGC | 2 cut(s) | 1081, 1123 |
| Cfr13I | GGNCC | 2 cut(s) | 349, 461 |
| ClaI | ATCGAT | 2 cut(s) | 273, 634 |
| Csp6I | GTAC | 2 cut(s) | 545, 600 |
| CviAII | CATG | 8 cut(s) | 7, 497, 536, 575, 665, 748, 989, 1094 |
| CviJI | RGCY | 7 cut(s) | 313, 381, 534, 695, 873, 944, 993 |
| CviKI_1 | RGCY | 7 cut(s) | 313, 381, 534, 695, 873, 944, 993 |
| CviQI | GTAC | 2 cut(s) | 545, 600 |
| DdeI | CTNAG | 3 cut(s) | 17, 383, 925 |
| Eam1104I | CTCTTC | 2 cut(s) | 265, 885 |
| EarI | CTCTTC | 2 cut(s) | 265, 885 |
| Eco105I | TACGTA | 1 cut(s) | 548 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco31I | GGTCTC | 1 cut(s) | 958 |
| Eco47I | GGWCC | 2 cut(s) | 349, 461 |
| Eco47III | AGCGCT | 1 cut(s) | 1122 |
| Eco91I | GGTNACC | 1 cut(s) | 164 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 590 |
| EcoO65I | GGTNACC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 3 cut(s) | 295, 362, 695 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 753 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 8 cut(s) | 10, 500, 539, 578, 668, 751, 992, 1097 |
| FaqI | GGGAC | 1 cut(s) | 362 |
| FatI | CATG | 8 cut(s) | 6, 496, 535, 574, 664, 747, 988, 1093 |
| FbaI | TGATCA | 1 cut(s) | 1090 |
| Fnu4HI | GCNGC | 6 cut(s) | 590, 803, 918, 986, 1077, 1119 |
| FokI | GGATG | 4 cut(s) | 245, 606, 867, 1037 |
| Fsp4HI | GCNGC | 6 cut(s) | 590, 803, 918, 986, 1077, 1119 |
| FspBI | CTAG | 5 cut(s) | 392, 530, 540, 878, 911 |
| GlaI | GCGC | 2 cut(s) | 1080, 1122 |
| GluI | GCNGC | 6 cut(s) | 590, 803, 918, 986, 1077, 1119 |
| GsaI | CCCAGC | 1 cut(s) | 564 |
| GsuI | CTGGAG | 1 cut(s) | 599 |
| HaeII | RGCGCY | 1 cut(s) | 1124 |
| HaeIII | GGCC | 2 cut(s) | 534, 993 |
| HapII | CCGG | 1 cut(s) | 823 |
| HhaI | GCGC | 2 cut(s) | 1081, 1123 |
| Hin1II | CATG | 8 cut(s) | 10, 500, 539, 578, 668, 751, 992, 1097 |
| Hin6I | GCGC | 2 cut(s) | 1079, 1121 |
| HinP1I | GCGC | 2 cut(s) | 1079, 1121 |
| HinfI | GANTC | 6 cut(s) | 85, 395, 566, 636, 959, 1111 |
| HpaII | CCGG | 1 cut(s) | 823 |
| Hpy188I | TCNGA | 5 cut(s) | 509, 571, 869, 958, 1066 |
| Hpy188III | TCNNGA | 8 cut(s) | 143, 204, 223, 392, 436, 497, 927, 1094 |
| HpyAV | CCTTC | 4 cut(s) | 61, 232, 463, 563 |
| HpyCH4III | ACNGT | 4 cut(s) | 155, 174, 353, 604 |
| HpyCH4IV | ACGT | 2 cut(s) | 547, 973 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 297, 811 |
| HpyF3I | CTNAG | 3 cut(s) | 17, 383, 925 |
| HpySE526I | ACGT | 2 cut(s) | 547, 973 |
| Hsp92II | CATG | 8 cut(s) | 10, 500, 539, 578, 668, 751, 992, 1097 |
| HspAI | GCGC | 2 cut(s) | 1079, 1121 |
| Ksp22I | TGATCA | 1 cut(s) | 1090 |
| Lsp1109I | GCAGC | 4 cut(s) | 576, 814, 904, 972 |
| LweI | GCATC | 1 cut(s) | 628 |
| MaeI | CTAG | 5 cut(s) | 392, 530, 540, 878, 911 |
| MaeII | ACGT | 2 cut(s) | 547, 973 |
| MaeIII | GTNAC | 4 cut(s) | 164, 548, 709, 1102 |
| MboII | GAAGA | 4 cut(s) | 252, 463, 899, 902 |
| MflI | RGATCY | 3 cut(s) | 36, 70, 432 |
| MluCI | AATT | 5 cut(s) | 25, 96, 199, 846, 862 |
| MlyI | GAGTC | 2 cut(s) | 389, 1105 |
| MmeI | TCCRAC | 2 cut(s) | 747, 862 |
| Mph1103I | ATGCAT | 1 cut(s) | 753 |
| MseI | TTAA | 2 cut(s) | 426, 761 |
| MspA1I | CMGCKG | 1 cut(s) | 950 |
| MspCI | CTTAAG | 1 cut(s) | 760 |
| MspI | CCGG | 1 cut(s) | 823 |
| MspR9I | CCNGG | 3 cut(s) | 297, 364, 697 |
| MvaI | CCWGG | 3 cut(s) | 297, 364, 697 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 297, 811 |
| NlaIII | CATG | 8 cut(s) | 10, 500, 539, 578, 668, 751, 992, 1097 |
| NlaIV | GGNNCC | 1 cut(s) | 350 |
| NmuCI | GTSAC | 1 cut(s) | 1102 |
| NsiI | ATGCAT | 1 cut(s) | 753 |
| NspI | RCATGY | 1 cut(s) | 668 |
| NspV | TTCGAA | 1 cut(s) | 250 |
| PagI | TCATGA | 2 cut(s) | 496, 1093 |
| PciI | ACATGT | 1 cut(s) | 664 |
| PfeI | GAWTC | 4 cut(s) | 85, 566, 636, 959 |
| PkrI | GCNGC | 6 cut(s) | 591, 804, 919, 987, 1078, 1120 |
| PleI | GAGTC | 2 cut(s) | 389, 1105 |
| PpsI | GAGTC | 2 cut(s) | 389, 1105 |
| Ppu21I | YACGTR | 1 cut(s) | 548 |
| PscI | ACATGT | 1 cut(s) | 664 |
| Psp6I | CCWGG | 3 cut(s) | 295, 362, 695 |
| PspEI | GGTNACC | 1 cut(s) | 164 |
| PspFI | CCCAGC | 1 cut(s) | 560 |
| PspGI | CCWGG | 3 cut(s) | 295, 362, 695 |
| PspN4I | GGNNCC | 1 cut(s) | 350 |
| PspPI | GGNCC | 2 cut(s) | 349, 461 |
| PstI | CTGCAG | 1 cut(s) | 594 |
| PstNI | CAGNNNCTG | 1 cut(s) | 873 |
| PsuI | RGATCY | 3 cut(s) | 36, 70, 432 |
| RsaI | GTAC | 2 cut(s) | 546, 601 |
| RsaNI | GTAC | 2 cut(s) | 545, 600 |
| SaqAI | TTAA | 2 cut(s) | 426, 761 |
| SatI | GCNGC | 6 cut(s) | 590, 803, 918, 986, 1077, 1119 |
| Sau96I | GGNCC | 2 cut(s) | 349, 461 |
| SchI | GAGTC | 2 cut(s) | 389, 1105 |
| ScrFI | CCNGG | 3 cut(s) | 297, 364, 697 |
| SfaNI | GCATC | 1 cut(s) | 628 |
| SfcI | CTRYAG | 3 cut(s) | 590, 945, 1124 |
| SfuI | TTCGAA | 1 cut(s) | 250 |
| SinI | GGWCC | 2 cut(s) | 349, 461 |
| SmlI | CTYRAG | 1 cut(s) | 760 |
| SmoI | CTYRAG | 1 cut(s) | 760 |
| SnaBI | TACGTA | 1 cut(s) | 548 |
| Sse9I | AATT | 5 cut(s) | 25, 96, 199, 846, 862 |
| SsiI | CCGC | 4 cut(s) | 305, 623, 950, 1076 |
| SspI | AATATT | 1 cut(s) | 703 |
| SspMI | CTAG | 5 cut(s) | 392, 530, 540, 878, 911 |
| StyD4I | CCNGG | 3 cut(s) | 295, 362, 695 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 4 cut(s) | 155, 174, 353, 604 |
| TaiI | ACGT | 2 cut(s) | 550, 976 |
| TaqI | TCGA | 4 cut(s) | 250, 273, 634, 793 |
| TasI | AATT | 5 cut(s) | 25, 96, 199, 846, 862 |
| TatI | WGTACW | 1 cut(s) | 599 |
| TauI | GCSGC | 1 cut(s) | 1079 |
| TfiI | GAWTC | 4 cut(s) | 85, 566, 636, 959 |
| Tru1I | TTAA | 2 cut(s) | 426, 761 |
| Tru9I | TTAA | 2 cut(s) | 426, 761 |
| TscAI | CASTG | 2 cut(s) | 471, 1107 |
| TseFI | GTSAC | 1 cut(s) | 1102 |
| TseI | GCWGC | 5 cut(s) | 589, 802, 917, 985, 1118 |
| Tsp45I | GTSAC | 1 cut(s) | 1102 |
| TspDTI | ATGAA | 3 cut(s) | 17, 485, 617 |
| TspRI | CASTG | 2 cut(s) | 471, 1107 |
| Vha464I | CTTAAG | 1 cut(s) | 760 |
| VpaK11BI | GGWCC | 2 cut(s) | 349, 461 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 590 |
| XbaI | TCTAGA | 1 cut(s) | 391 |
| XceI | RCATGY | 1 cut(s) | 668 |
| XspI | CTAG | 5 cut(s) | 392, 530, 540, 878, 911 |
| Zsp2I | ATGCAT | 1 cut(s) | 753 |