ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 203 | 2.3e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 47, 607 |
| AatII | GACGTC | 1 cut(s) | 605 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 216 |
| AccII | CGCG | 2 cut(s) | 558, 754 |
| AciI | CCGC | 4 cut(s) | 82, 344, 558, 707 |
| AclI | AACGTT | 1 cut(s) | 1003 |
| AclWI | GGATC | 1 cut(s) | 669 |
| AcoI | YGGCCR | 1 cut(s) | 336 |
| AcsI | RAATTY | 1 cut(s) | 1365 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcyI | GRCGYC | 1 cut(s) | 602 |
| AfaI | GTAC | 6 cut(s) | 258, 509, 570, 992, 1049, 1361 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 216, 656, 802 |
| AflIII | ACRYGT | 1 cut(s) | 848 |
| AgeI | ACCGGT | 1 cut(s) | 1285 |
| AgsI | TTSAA | 5 cut(s) | 74, 107, 740, 862, 908 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 502 |
| AjnI | CCWGG | 2 cut(s) | 359, 401 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 988, 1020 |
| AluBI | AGCT | 1 cut(s) | 1064 |
| AluI | AGCT | 1 cut(s) | 1064 |
| Alw21I | GWGCWC | 1 cut(s) | 1228 |
| Alw26I | GTCTC | 1 cut(s) | 489 |
| Alw44I | GTGCAC | 1 cut(s) | 1224 |
| AlwI | GGATC | 1 cut(s) | 669 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 934 |
| AoxI | GGCC | 5 cut(s) | 83, 299, 336, 812, 895 |
| ApaLI | GTGCAC | 1 cut(s) | 1224 |
| ApeKI | GCWGC | 6 cut(s) | 44, 370, 593, 626, 1253, 1354 |
| ApoI | RAATTY | 1 cut(s) | 1365 |
| AsiGI | ACCGGT | 1 cut(s) | 1285 |
| AspA2I | CCTAGG | 2 cut(s) | 412, 1190 |
| AspLEI | GCGC | 3 cut(s) | 312, 558, 729 |
| AspS9I | GGNCC | 4 cut(s) | 299, 609, 940, 1288 |
| AsuC2I | CCSGG | 2 cut(s) | 199, 899 |
| AsuHPI | GGTGA | 4 cut(s) | 428, 1043, 1207, 1354 |
| AsuII | TTCGAA | 1 cut(s) | 1007 |
| AvaII | GGWCC | 3 cut(s) | 609, 940, 1288 |
| AvrII | CCTAGG | 2 cut(s) | 412, 1190 |
| BaeGI | GKGCMC | 2 cut(s) | 672, 1228 |
| BalI | TGGCCA | 1 cut(s) | 338 |
| Bbv12I | GWGCWC | 1 cut(s) | 1228 |
| BbvI | GCAGC | 6 cut(s) | 31, 357, 580, 638, 1240, 1366 |
| BccI | CCATC | 5 cut(s) | 218, 648, 959, 1022, 1288 |
| BceAI | ACGGC | 5 cut(s) | 32, 357, 529, 614, 761 |
| BciT130I | CCWGG | 2 cut(s) | 361, 403 |
| BcnI | CCSGG | 2 cut(s) | 199, 899 |
| BcoDI | GTCTC | 1 cut(s) | 489 |
| BfaI | CTAG | 4 cut(s) | 413, 921, 1091, 1191 |
| BfmI | CTRYAG | 1 cut(s) | 1236 |
| BfoI | RGCGCY | 2 cut(s) | 313, 730 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 307 |
| BisI | GCNGC | 7 cut(s) | 45, 83, 371, 594, 627, 1254, 1355 |
| BlnI | CCTAGG | 2 cut(s) | 412, 1190 |
| BlsI | GCNGC | 7 cut(s) | 46, 84, 372, 595, 628, 1255, 1356 |
| BmcAI | AGTACT | 1 cut(s) | 1049 |
| Bme1390I | CCNGG | 4 cut(s) | 199, 361, 403, 899 |
| Bme18I | GGWCC | 3 cut(s) | 609, 940, 1288 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 502 |
| BmgT120I | GGNCC | 4 cut(s) | 299, 609, 940, 1288 |
| BmiI | GGNNCC | 1 cut(s) | 794 |
| BmrFI | CCNGG | 4 cut(s) | 199, 361, 403, 899 |
| BmsI | GCATC | 7 cut(s) | 39, 223, 274, 340, 471, 763, 1104 |
| BpmI | CTGGAG | 1 cut(s) | 633 |
| Bpu14I | TTCGAA | 1 cut(s) | 1007 |
| BpuMI | CCSGG | 2 cut(s) | 199, 899 |
| BsaAI | YACGTR | 1 cut(s) | 572 |
| BsaHI | GRCGYC | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 5 cut(s) | 198, 339, 401, 412, 1190 |
| BsaWI | WCCGGW | 1 cut(s) | 1285 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 447, 477, 1331, 1361 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 216, 656, 802 |
| Bse118I | RCCGGY | 2 cut(s) | 1071, 1285 |
| Bse1I | ACTGG | 2 cut(s) | 650, 998 |
| BseBI | CCWGG | 2 cut(s) | 361, 403 |
| BseDI | CCNNGG | 5 cut(s) | 198, 339, 401, 412, 1190 |
| BseGI | GGATG | 3 cut(s) | 289, 391, 1335 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 216, 656, 802 |
| BseMII | CTCAG | 3 cut(s) | 394, 945, 1214 |
| BseNI | ACTGG | 2 cut(s) | 650, 998 |
| BseSI | GKGCMC | 2 cut(s) | 672, 1228 |
| BseXI | GCAGC | 6 cut(s) | 31, 357, 580, 638, 1240, 1366 |
| Bsh1236I | CGCG | 2 cut(s) | 558, 754 |
| BshFI | GGCC | 5 cut(s) | 85, 301, 338, 814, 897 |
| BshTI | ACCGGT | 1 cut(s) | 1285 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1228 |
| BsiSI | CCGG | 4 cut(s) | 198, 898, 1072, 1286 |
| BsiWI | CGTACG | 2 cut(s) | 507, 568 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 216, 656, 802 |
| BsmAI | GTCTC | 1 cut(s) | 489 |
| BsmBI | CGTCTC | 1 cut(s) | 489 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| BsmI | GAATGC | 1 cut(s) | 1304 |
| BsnI | GGCC | 5 cut(s) | 85, 301, 338, 814, 897 |
| Bsp119I | TTCGAA | 1 cut(s) | 1007 |
| Bsp1286I | GDGCHC | 2 cut(s) | 672, 1228 |
| Bsp1407I | TGTACA | 1 cut(s) | 256 |
| Bsp143I | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| BspACI | CCGC | 4 cut(s) | 82, 344, 558, 707 |
| BspANI | GGCC | 5 cut(s) | 85, 301, 338, 814, 897 |
| BspCNI | CTCAG | 3 cut(s) | 393, 946, 1213 |
| BspFNI | CGCG | 2 cut(s) | 558, 754 |
| BspLI | GGNNCC | 1 cut(s) | 794 |
| BspMAI | CTGCAG | 1 cut(s) | 1240 |
| BspPI | GGATC | 1 cut(s) | 669 |
| BspT104I | TTCGAA | 1 cut(s) | 1007 |
| BsrFI | RCCGGY | 2 cut(s) | 1071, 1285 |
| BsrGI | TGTACA | 1 cut(s) | 256 |
| BsrI | ACTGG | 2 cut(s) | 650, 998 |
| BssAI | RCCGGY | 2 cut(s) | 1071, 1285 |
| BssECI | CCNNGG | 5 cut(s) | 198, 339, 401, 412, 1190 |
| BssMI | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| BssNI | GRCGYC | 1 cut(s) | 602 |
| BssT1I | CCWWGG | 2 cut(s) | 412, 1190 |
| Bst2UI | CCWGG | 2 cut(s) | 361, 403 |
| Bst4CI | ACNGT | 3 cut(s) | 504, 1160, 1230 |
| BstACI | GRCGYC | 1 cut(s) | 602 |
| BstAUI | TGTACA | 1 cut(s) | 256 |
| BstBAI | YACGTR | 1 cut(s) | 572 |
| BstBI | TTCGAA | 1 cut(s) | 1007 |
| BstC8I | GCNNGC | 2 cut(s) | 207, 1077 |
| BstDEI | CTNAG | 6 cut(s) | 380, 954, 1044, 1080, 1200, 1377 |
| BstDSI | CCRYGG | 1 cut(s) | 339 |
| BstF5I | GGATG | 3 cut(s) | 289, 391, 1335 |
| BstFNI | CGCG | 2 cut(s) | 558, 754 |
| BstH2I | RGCGCY | 2 cut(s) | 313, 730 |
| BstHHI | GCGC | 3 cut(s) | 312, 558, 729 |
| BstKTI | GATC | 5 cut(s) | 93, 397, 421, 522, 664 |
| BstMAI | GTCTC | 1 cut(s) | 489 |
| BstMBI | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 53, 211, 307, 475, 564, 782 |
| BstNI | CCWGG | 2 cut(s) | 361, 403 |
| BstSCI | CCNGG | 4 cut(s) | 197, 359, 401, 897 |
| BstSFI | CTRYAG | 1 cut(s) | 1236 |
| BstSLI | GKGCMC | 2 cut(s) | 672, 1228 |
| BstSNI | TACGTA | 1 cut(s) | 572 |
| BstUI | CGCG | 2 cut(s) | 558, 754 |
| BstV1I | GCAGC | 6 cut(s) | 31, 357, 580, 638, 1240, 1366 |
| BsuRI | GGCC | 5 cut(s) | 85, 301, 338, 814, 897 |
| BtgI | CCRYGG | 1 cut(s) | 339 |
| BtsCI | GGATG | 3 cut(s) | 289, 391, 1335 |
| BtsIMutI | CAGTG | 2 cut(s) | 500, 951 |
| Cac8I | GCNNGC | 2 cut(s) | 207, 1077 |
| CaiI | CAGNNNCTG | 1 cut(s) | 934 |
| CfoI | GCGC | 3 cut(s) | 312, 558, 729 |
| Cfr10I | RCCGGY | 2 cut(s) | 1071, 1285 |
| Cfr13I | GGNCC | 4 cut(s) | 299, 609, 940, 1288 |
| CseI | GACGC | 3 cut(s) | 50, 506, 760 |
| Csp6I | GTAC | 6 cut(s) | 257, 508, 569, 991, 1048, 1360 |
| CspAI | ACCGGT | 1 cut(s) | 1285 |
| CviQI | GTAC | 6 cut(s) | 257, 508, 569, 991, 1048, 1360 |
| DdeI | CTNAG | 6 cut(s) | 380, 954, 1044, 1080, 1200, 1377 |
| DpnI | GATC | 5 cut(s) | 92, 396, 420, 521, 663 |
| DpnII | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 47, 607 |
| DriI | GACNNNNNGTC | 1 cut(s) | 502 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 47, 607 |
| EaeI | YGGCCR | 1 cut(s) | 336 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 502 |
| EciI | GGCGGA | 1 cut(s) | 359 |
| Eco105I | TACGTA | 1 cut(s) | 572 |
| Eco130I | CCWWGG | 2 cut(s) | 412, 1190 |
| Eco47I | GGWCC | 3 cut(s) | 609, 940, 1288 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| EcoRII | CCWGG | 2 cut(s) | 359, 401 |
| EcoT14I | CCWWGG | 2 cut(s) | 412, 1190 |
| ErhI | CCWWGG | 2 cut(s) | 412, 1190 |
| Esp3I | CGTCTC | 1 cut(s) | 489 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 83, 371, 594, 627, 1254, 1355 |
| FokI | GGATG | 3 cut(s) | 296, 398, 1342 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 83, 371, 594, 627, 1254, 1355 |
| FspBI | CTAG | 4 cut(s) | 413, 921, 1091, 1191 |
| GlaI | GCGC | 3 cut(s) | 311, 557, 728 |
| GluI | GCNGC | 7 cut(s) | 45, 83, 371, 594, 627, 1254, 1355 |
| GsuI | CTGGAG | 1 cut(s) | 633 |
| HaeII | RGCGCY | 2 cut(s) | 313, 730 |
| HaeIII | GGCC | 5 cut(s) | 85, 301, 338, 814, 897 |
| HapII | CCGG | 4 cut(s) | 198, 898, 1072, 1286 |
| HgaI | GACGC | 3 cut(s) | 50, 506, 760 |
| HhaI | GCGC | 3 cut(s) | 312, 558, 729 |
| Hin1I | GRCGYC | 1 cut(s) | 602 |
| Hin6I | GCGC | 3 cut(s) | 310, 556, 727 |
| HinP1I | GCGC | 3 cut(s) | 310, 556, 727 |
| HincII | GTYRAC | 2 cut(s) | 60, 637 |
| HindII | GTYRAC | 2 cut(s) | 60, 637 |
| HindIII | AAGCTT | 1 cut(s) | 1062 |
| HinfI | GANTC | 6 cut(s) | 7, 228, 389, 1084, 1198, 1214 |
| HpaI | GTTAAC | 1 cut(s) | 637 |
| HpaII | CCGG | 4 cut(s) | 198, 898, 1072, 1286 |
| HphI | GGTGA | 4 cut(s) | 428, 1043, 1207, 1354 |
| Hpy166II | GTNNAC | 8 cut(s) | 60, 118, 259, 549, 637, 655, 991, 1226 |
| Hpy188I | TCNGA | 6 cut(s) | 394, 494, 613, 1027, 1136, 1150 |
| Hpy188III | TCNNGA | 3 cut(s) | 1202, 1264, 1291 |
| Hpy8I | GTNNAC | 8 cut(s) | 60, 118, 259, 549, 637, 655, 991, 1226 |
| Hpy99I | CGWCG | 1 cut(s) | 604 |
| HpyAV | CCTTC | 4 cut(s) | 96, 734, 755, 958 |
| HpyCH4III | ACNGT | 3 cut(s) | 504, 1160, 1230 |
| HpyCH4IV | ACGT | 6 cut(s) | 145, 264, 571, 602, 850, 1003 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 53, 211, 307, 475, 564, 782 |
| HpyF3I | CTNAG | 6 cut(s) | 380, 954, 1044, 1080, 1200, 1377 |
| HpySE526I | ACGT | 6 cut(s) | 145, 264, 571, 602, 850, 1003 |
| Hsp92I | GRCGYC | 1 cut(s) | 602 |
| HspAI | GCGC | 3 cut(s) | 310, 556, 727 |
| KspAI | GTTAAC | 1 cut(s) | 637 |
| Kzo9I | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| LmnI | GCTCC | 1 cut(s) | 251 |
| Lsp1109I | GCAGC | 6 cut(s) | 31, 357, 580, 638, 1240, 1366 |
| LweI | GCATC | 7 cut(s) | 39, 223, 274, 340, 471, 763, 1104 |
| MaeI | CTAG | 4 cut(s) | 413, 921, 1091, 1191 |
| MaeII | ACGT | 6 cut(s) | 145, 264, 571, 602, 850, 1003 |
| MaeIII | GTNAC | 2 cut(s) | 1031, 1195 |
| MalI | GATC | 5 cut(s) | 92, 396, 420, 521, 663 |
| MboI | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| MboII | GAAGA | 1 cut(s) | 1137 |
| MfeI | CAATTG | 1 cut(s) | 865 |
| MhlI | GDGCHC | 2 cut(s) | 672, 1228 |
| MlsI | TGGCCA | 1 cut(s) | 338 |
| MluNI | TGGCCA | 1 cut(s) | 338 |
| MlyI | GAGTC | 4 cut(s) | 237, 398, 1192, 1223 |
| MmeI | TCCRAC | 1 cut(s) | 918 |
| Mox20I | TGGCCA | 1 cut(s) | 338 |
| MscI | TGGCCA | 1 cut(s) | 338 |
| MseI | TTAA | 2 cut(s) | 314, 636 |
| MslI | CAYNNNNRTG | 2 cut(s) | 267, 441 |
| Msp20I | TGGCCA | 1 cut(s) | 338 |
| MspI | CCGG | 4 cut(s) | 198, 898, 1072, 1286 |
| MspR9I | CCNGG | 4 cut(s) | 199, 361, 403, 899 |
| MunI | CAATTG | 1 cut(s) | 865 |
| Mva1269I | GAATGC | 1 cut(s) | 1304 |
| MvaI | CCWGG | 2 cut(s) | 361, 403 |
| MvnI | CGCG | 2 cut(s) | 558, 754 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 53, 211, 307, 475, 564, 782 |
| NciI | CCSGG | 2 cut(s) | 199, 899 |
| NdeII | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| NlaIV | GGNNCC | 1 cut(s) | 794 |
| NmuCI | GTSAC | 2 cut(s) | 1031, 1195 |
| NspV | TTCGAA | 1 cut(s) | 1007 |
| PctI | GAATGC | 1 cut(s) | 1304 |
| PfeI | GAWTC | 2 cut(s) | 7, 1084 |
| Pfl23II | CGTACG | 2 cut(s) | 507, 568 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 216 |
| PinAI | ACCGGT | 1 cut(s) | 1285 |
| PkrI | GCNGC | 7 cut(s) | 46, 84, 372, 595, 628, 1255, 1356 |
| PleI | GAGTC | 4 cut(s) | 236, 397, 1192, 1222 |
| PpsI | GAGTC | 4 cut(s) | 236, 397, 1192, 1222 |
| Ppu21I | YACGTR | 1 cut(s) | 572 |
| Psp1406I | AACGTT | 1 cut(s) | 1003 |
| Psp6I | CCWGG | 2 cut(s) | 359, 401 |
| PspGI | CCWGG | 2 cut(s) | 359, 401 |
| PspLI | CGTACG | 2 cut(s) | 507, 568 |
| PspN4I | GGNNCC | 1 cut(s) | 794 |
| PspPI | GGNCC | 4 cut(s) | 299, 609, 940, 1288 |
| PstI | CTGCAG | 1 cut(s) | 1240 |
| PstNI | CAGNNNCTG | 1 cut(s) | 934 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RsaI | GTAC | 6 cut(s) | 258, 509, 570, 992, 1049, 1361 |
| RsaNI | GTAC | 6 cut(s) | 257, 508, 569, 991, 1048, 1360 |
| RseI | CAYNNNNRTG | 2 cut(s) | 267, 441 |
| SaqAI | TTAA | 2 cut(s) | 314, 636 |
| SatI | GCNGC | 7 cut(s) | 45, 83, 371, 594, 627, 1254, 1355 |
| Sau3AI | GATC | 5 cut(s) | 90, 394, 418, 519, 661 |
| Sau96I | GGNCC | 4 cut(s) | 299, 609, 940, 1288 |
| ScaI | AGTACT | 1 cut(s) | 1049 |
| SchI | GAGTC | 4 cut(s) | 237, 398, 1192, 1223 |
| ScrFI | CCNGG | 4 cut(s) | 199, 361, 403, 899 |
| SduI | GDGCHC | 2 cut(s) | 672, 1228 |
| SfaNI | GCATC | 7 cut(s) | 39, 223, 274, 340, 471, 763, 1104 |
| SfcI | CTRYAG | 1 cut(s) | 1236 |
| SfuI | TTCGAA | 1 cut(s) | 1007 |
| SinI | GGWCC | 3 cut(s) | 609, 940, 1288 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 267, 441 |
| SnaBI | TACGTA | 1 cut(s) | 572 |
| SsiI | CCGC | 4 cut(s) | 82, 344, 558, 707 |
| SspMI | CTAG | 4 cut(s) | 413, 921, 1091, 1191 |
| StyD4I | CCNGG | 4 cut(s) | 197, 359, 401, 897 |
| StyI | CCWWGG | 2 cut(s) | 412, 1190 |
| TaaI | ACNGT | 3 cut(s) | 504, 1160, 1230 |
| TaiI | ACGT | 6 cut(s) | 148, 267, 574, 605, 853, 1006 |
| TaqI | TCGA | 6 cut(s) | 89, 231, 522, 892, 1007, 1098 |
| TatI | WGTACW | 4 cut(s) | 256, 990, 1047, 1359 |
| TauI | GCSGC | 1 cut(s) | 85 |
| TfiI | GAWTC | 2 cut(s) | 7, 1084 |
| Tru1I | TTAA | 2 cut(s) | 314, 636 |
| Tru9I | TTAA | 2 cut(s) | 314, 636 |
| TscAI | CASTG | 2 cut(s) | 507, 958 |
| TseFI | GTSAC | 2 cut(s) | 1031, 1195 |
| TseI | GCWGC | 6 cut(s) | 44, 370, 593, 626, 1253, 1354 |
| Tsp45I | GTSAC | 2 cut(s) | 1031, 1195 |
| TspDTI | ATGAA | 9 cut(s) | 149, 459, 611, 679, 722, 774, 1043, 1223, 1257 |
| TspGWI | ACGGA | 2 cut(s) | 525, 736 |
| TspRI | CASTG | 2 cut(s) | 507, 958 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 216 |
| VneI | GTGCAC | 1 cut(s) | 1224 |
| VpaK11BI | GGWCC | 3 cut(s) | 609, 940, 1288 |
| XapI | RAATTY | 1 cut(s) | 1365 |
| XmaJI | CCTAGG | 2 cut(s) | 412, 1190 |
| XspI | CTAG | 4 cut(s) | 413, 921, 1091, 1191 |
| ZraI | GACGTC | 1 cut(s) | 603 |
| ZrmI | AGTACT | 1 cut(s) | 1049 |